HHsearch alignment for GI: 254780283 and conserved domain: TIGR03169

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=100.00  E-value=1.6e-39  Score=249.36  Aligned_cols=283  Identities=19%  Similarity=0.164  Sum_probs=197.8

Q ss_pred             EEEECCCHHHHHHHHHHHHC---CCCEEEEECCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
Q ss_conf             99998977799999999986---995999967887756875010078774777789789998664323200232221133
Q gi|254780283|r    8 ILIIGSGPAGYTAAIYAARA---MLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLV   84 (321)
Q Consensus         8 VvIIG~GpAGl~aA~~l~r~---g~~v~iie~~~~GG~l~~~~~i~n~~g~~~~~~~~~l~~~~~~~~~~~~v~~~~~~V   84 (321)
T Consensus         2 iVIvGgG~aG~~~a~~L~~~~~~~~~ItLId~~~~---~~y~~~lp~~~~--g~~~~~~i~~~~~~~~~~~gv~~i~~~V   76 (364)
T TIGR03169         2 LVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST---TPYSGMLPGMIA--GHYSLDEIRIDLRRLARQAGARFVIAEA   76 (364)
T ss_pred             EEEECCHHHHHHHHHHHCCCCCCCCEEEEECCCCC---CEECCHHHHHHH--CCCCHHHEECCHHHHHHHCCCEEEEEEE
T ss_conf             99999609999999997041789983999999886---516251699974--0477999221689999777949996378


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCC--EEECCCCCCC-------CCCCCCCCCEEEEECC
Q ss_conf             201122222222222222221000014776642024652774332--0210121111-------1111122100001025
Q gi|254780283|r   85 VSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQ--GFGVSACATC-------DGFFYKNKDVIVVGGG  155 (321)
Q Consensus        85 ~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~--~~~v~~~~~~-------d~~~~~~k~v~ViGgG  155 (321)
T Consensus        77 ~~ID~~~k--~V~~~~g~~l~YD~LViAtGs~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vvGgG  154 (364)
T TIGR03169        77 TGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRLAVVGGG  154 (364)
T ss_pred             EEEECCCC--EEEECCCCEEECCEEEEECCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEECCC
T ss_conf             99976889--8998899887368899943677788999972026422477999999999999876405799645897858


Q ss_pred             CCCCCCEEEEECC----CC--CCCCCCCCCCCCC--CC---CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCE
Q ss_conf             5654310121013----33--2223443433221--11---121122355443322223112114864333444443331
Q gi|254780283|r  156 NTAAEEALHLAKI----AR--RVTIVHRRSSLRS--EK---ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGV  224 (321)
Q Consensus       156 ~~g~e~A~~L~~~----~~--~Vtli~r~~~l~~--~~---~~~~~~~~~~~i~~~~~~~v~~i~g~~~~~~~~~~~~~v  224 (321)
T Consensus       155 ~~gvE~a~~l~~~~~~~~~~~~v~i-~~~~~~l~~~~~~~~~~~~~~l~~~gI~v~~~~~v~~v~~~~-----------v  222 (364)
T TIGR03169       155 AAGVEIALALRRRLPKRGLRGQVTL-IAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA-----------L  222 (364)
T ss_pred             HHHHHHHHHHHHHHHHCCCCEEEEE-ECCCCCCHHCCHHHHHHHHHHHHHCCCEEEECCEEEEECCCC-----------E
T ss_conf             1799999999999874687427998-357751012599999999999997795698375368977995-----------1


Q ss_pred             EECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCEECCCCEEEECCCCCC-CCCCEEEECCCCCCC----HHHHHHHH
Q ss_conf             4203210000011222211123223565677425618069979900888554-789828970126884----45678999
Q gi|254780283|r  225 RLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTAT-SIPGIFAAGDVADER----YRQAITAA  299 (321)
Q Consensus       225 ~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~~~~~~~~~~~g~i~~~~~~~~T-s~p~Iya~GDv~~~~----~~~~~~A~  299 (321)
T Consensus       223 ~l~-----~g~~i~~d~vi~~~G~~p~~~~~~~~l~~d~~G~I~V-d~~lq~~~~~~VfAiGD~a~~~~~p~pk~g~~A~  296 (364)
T TIGR03169       223 ILA-----DGRTLPADAILWATGARAPPWLAESGLPLDEDGFLRV-DPTLQSLSHPHVFAAGDCAVITDAPRPKAGVYAV  296 (364)
T ss_pred             EEC-----CCCEEEEEEEEECCCCCCCHHHHHCCCCCCCCCCEEE-CCCCEECCCCCEEEECCEECCCCCCCCCCCHHHH
T ss_conf             837-----9978963089988887788657744663078997887-8873768999999971543688999997438899


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             9799999999999974
Q gi|254780283|r  300 AMGCMAALEVEHYLSI  315 (321)
Q Consensus       300 ~~G~~Aa~~i~~yl~~  315 (321)
T Consensus       297 ~qa~~~a~Ni~~~l~g  312 (364)
T TIGR03169       297 RQAPILAANLRASLRG  312 (364)
T ss_pred             HHHHHHHHHHHHHHCC
T ss_conf             9999999999999669