HHsearch alignment for GI: 254780283 and conserved domain: TIGR03197
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.27 E-value=0.00064 Score=41.49 Aligned_cols=41 Identities=20% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCCCCE-EEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCC
Q ss_conf 2322211-3320112222222222222222100001477664
Q gi|254780283|r 76 GTKIIQD-LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116 (321)
Q Consensus 76 ~v~~~~~-~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~ 116 (321)
T Consensus 148 g~~~~~~~~V~~i~~~g~~~~v~~~~g~~~~ad~vV~AaG~~ 189 (381)
T TIGR03197 148 RLTLHFNTEITSLERDGEGWQLLDANGEVIAASVVVLANGAQ 189 (381)
T ss_pred CCEEEECCEEEEEEEECCEEEEEECCCCEEECCEEEECCCCC
T ss_conf 978993625899999599899998999889735589855420