HHsearch alignment for GI: 254780283 and conserved domain: pfam05834
>pfam05834 Lycopene_cycl Lycopene cyclase protein. This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare.
Probab=99.05 E-value=1.2e-09 Score=74.86 Aligned_cols=127 Identities=22% Similarity=0.289 Sum_probs=83.6
Q ss_pred EEEEECCCHHHHHHHHHHHHC--CCCEEEEECCC---CCCEEEEECC---CC--------CCC-------CCC-------
Q ss_conf 199998977799999999986--99599996788---7756875010---07--------877-------477-------
Q gi|254780283|r 7 KILIIGSGPAGYTAAIYAARA--MLKPVIIAGSD---LGGQLMITES---IE--------NYP-------GFA------- 56 (321)
Q Consensus 7 dVvIIG~GpAGl~aA~~l~r~--g~~v~iie~~~---~GG~l~~~~~---i~--------n~~-------g~~------- 56 (321)
T Consensus 1 DviIiG~G~AGLsLA~~L~~~~~~~~Vllid~~~~~~~~~d~tW~fW~~~~~~~~~~~~~~W~~~~v~~~~~~~~l~~~~ 80 (374)
T pfam05834 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPCVEHSWPGYEVRFPDGRRKLIGRG 80 (374)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCEEECCCCCCCCCHHHHHHCEECCEEEEECCCCEEECCCC
T ss_conf 98999952999999999974089981999978988888998385457178777577764587967999289974766887
Q ss_pred -CCCCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCEECCCCCCCCEEEEECCCCCCCEEEC
Q ss_conf -77897899986643232002322211332011222222222222222210000147766420246527743320210
Q gi|254780283|r 57 -TSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGV 133 (321)
Q Consensus 57 -~~~~~~~l~~~~~~~~~~~~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~a~~lIiAtG~~~~~~~ipG~~~~~~~~v 133 (321)
T Consensus 81 Y~~i~s~~f~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~V~Dsr~~~~~~~~~~l~Q~F~G~~I 158 (374)
T pfam05834 81 YGRVSSDRLHEELLRRCAENGVIRLNAKVASVDAEPVESLVVLEDGRTIRARLVIDARGASPSGALTVGYQTFYGVEV 158 (374)
T ss_pred CEEEEHHHHHHHHHHHHHHCCCEEECCEEEEEECCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEEEEE
T ss_conf 079888999999999986579699913778975378705999269958744499947876677888861489999999