RPSBLAST alignment for GI: 254780283 and conserved domain: TIGR01317
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485
Score = 47.9 bits (114), Expect = 4e-06
Identities = 86/359 (23%), Positives = 131/359 (36%), Gaps = 77/359 (21%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLM 65
K+ ++GSGPAG AA RA + D GG LM I N + D +
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY--GIPNMKLDKAIV--DRRI 200
Query: 66 EQMRQQAENF--GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRL- 122
+ + + +F T+I D +S D + F DAVV+A G+ K L
Sbjct: 201 DLLSAEGIDFVTNTEIGVD--ISADELKEQF------------DAVVLAGGAT-KPRDLP 245
Query: 123 ----ESEKKFQGFGVSACAT--------CDGFFY--KNKDVIVVGGGNTAAE----EALH 164
E + AT D F K K V+V+GGG+T A+ H
Sbjct: 246 IPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRH 305
Query: 165 LAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS---- 220
A + I+ + R++ + +D+ + E G P +
Sbjct: 306 GAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHE-EAAAHYGRDPREYSILTKEFI 364
Query: 221 ------VSGVRLHN--------------KKEGNFFERNVDGIFIAIGY----KPNTKIFR 256
V+ +R + G+ D + +A+G+ + F
Sbjct: 365 GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDF- 423
Query: 257 HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAIT--AAAMGCMAALEVEHYL 313
+K T I D +TSIPG+FAAGD R Q++ A G AA V+ YL
Sbjct: 424 -GVKKTRRGNISAGYDDYSTSIPGVFAAGDC---RRGQSLIVWAINEGRKAAAAVDRYL 478