RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH)
protein [Candidatus Liberibacter asiaticus str. psy62]
(321 letters)
>gnl|CDD|30838 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 320 bits (822), Expect = 3e-88
Identities = 155/308 (50%), Positives = 204/308 (66%), Gaps = 13/308 (4%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
++IIG GPAG TAAIYAARA LK +I+ G + GGQL T +ENYPGF I G LM
Sbjct: 5 DVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELM 64
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
EQM++QAE FG +I++D V V+L+ PF V+T G + A AV+IATG+ + L + E
Sbjct: 65 EQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGT-YEAKAVIIATGAGARKLGVPGE 123
Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK 185
++F+G GVS CATCDGFF K KDV+V+GGG++A EEAL+L+KIA++VT+VHRR R+E+
Sbjct: 124 EEFEGKGVSYCATCDGFF-KGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRDEFRAEE 182
Query: 186 ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIA 245
IL E+L I+ L +T V +++G V GV L N K G E VDG+FIA
Sbjct: 183 ILVERLKKNVKIEVLTNTVVKEILGD--------DVEGVVLKNVK-GEEKELPVDGVFIA 233
Query: 246 IGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
IG+ PNT++ + + YI + TS+PGIFAAGDVAD+ RQ TAA G +A
Sbjct: 234 IGHLPNTELLKGLGVLDENGYIVV-DEEMETSVPGIFAAGDVADKNGRQIATAAGDGAIA 292
Query: 306 ALEVEHYL 313
AL E YL
Sbjct: 293 ALSAERYL 300
>gnl|CDD|35625 KOG0404, KOG0404, KOG0404, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 322
Score = 308 bits (791), Expect = 1e-84
Identities = 146/323 (45%), Positives = 207/323 (64%), Gaps = 16/323 (4%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVI-----IAGSDLGGQLMITESIENYPGF 55
+H+ ++IIGSGPA +TAAIYAARA LKP++ G GGQL T +EN+PGF
Sbjct: 4 GMTHNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF 63
Query: 56 ATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
I G LM++MR+Q+E FGT+II + V VDL PF + T + + ADAV++ATG+
Sbjct: 64 PDGITGPELMDKMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPV-TADAVILATGA 122
Query: 116 EVKWLRL--ESEKKFQGFGVSACATCDGF--FYKNKDVIVVGGGNTAAEEALHLAKIARR 171
K L L E E +F G+SACA CDG ++NK + V+GGG++A EEAL L K A +
Sbjct: 123 SAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEALFLTKYASK 182
Query: 172 VTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231
V I+HRR R+ KI+Q++ NI+ L++T V+ +G ++G+R+ N K
Sbjct: 183 VYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGDGKL------LNGLRIKNVKT 236
Query: 232 GNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291
G + V G+F AIG+ P TK + Q+++ YI T P ++ TS+PG+FAAGDV D++
Sbjct: 237 GEETDLPVSGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKK 296
Query: 292 YRQAITAAAMGCMAALEVEHYLS 314
YRQA+TAA GC+AAL+ E YL+
Sbjct: 297 YRQAVTAAGSGCIAALDAERYLT 319
>gnl|CDD|33432 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit
[Posttranslational modification, protein turnover,
chaperones].
Length = 520
Score = 176 bits (447), Expect = 9e-45
Identities = 91/311 (29%), Positives = 156/311 (50%), Gaps = 15/311 (4%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ 67
+L++G GPAG AAIYAAR ++ ++A GGQ++ T IEN+ G L
Sbjct: 214 VLVVGGGPAGAAAAIYAARKGIRTGLVA-ERFGGQVLDTMGIENFIS-VPETEGPKLAAA 271
Query: 68 MRQQAENFGTKIIQDLVVSVDLDRHP-----FLVETQSGDLWHADAVVIATGSEVKWLRL 122
+ + + ++ +L + L+ VE +G + A V++ATG+ + + +
Sbjct: 272 LEAHVKQYDVDVM-NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNV 330
Query: 123 ESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR 182
E +++ GV+ C CDG +K K V V+GGGN+ E A+ LA I VT++ L+
Sbjct: 331 PGEDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPELK 390
Query: 183 SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242
++ +LQ+KL N+ + + + +V G V+G+ ++ G ++G+
Sbjct: 391 ADAVLQDKLRSLPNVTIITNAQTTEVKGD------GDKVTGLEYRDRVSGEEHHLELEGV 444
Query: 243 FIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMG 302
F+ IG PNT+ + +++ I + T++PG+FAAGD Y+Q I A G
Sbjct: 445 FVQIGLLPNTEWLKGAVELNRRGEI-IVDARGETNVPGVFAAGDCTTVPYKQIIIAMGEG 503
Query: 303 CMAALEVEHYL 313
A+L YL
Sbjct: 504 AKASLSAFDYL 514
>gnl|CDD|31441 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 89.1 bits (221), Expect = 2e-18
Identities = 80/341 (23%), Positives = 133/341 (39%), Gaps = 67/341 (19%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQ----------------LMITESIE 50
+++IG+GPAGY AAI AA+ LK ++ G LGG +I E+
Sbjct: 7 VVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARH 66
Query: 51 NYPGFATSIRGDWL-MEQMRQQAENFGTKI---IQDLVVS--VDL--------DRHPFLV 96
+ S + E++ + + + ++ L+ VD+ D H V
Sbjct: 67 AAKEYGISAEVPKIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEV 126
Query: 97 ETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIVVG 153
+ + AD ++IATGS + G + + K +++VG
Sbjct: 127 TGEDKETITADNIIIATGSRPRIP------PGPGIDGARILDSSDALFLLELPKSLVIVG 180
Query: 154 GGNTAAEEALHLAKIARRVTIVHRRSS-LRSE-----KILQEKLFLQSNIDFLFDTEVVD 207
GG E A A + +VT+V R L E K L ++L + + L +T+V
Sbjct: 181 GGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELTKQL-EKGGVKILLNTKVTA 239
Query: 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNT 264
V V L + + G D + +AIG KPNT + +++ +
Sbjct: 240 VEKK-------DDGVLVTLEDGEGGTI---EADAVLVAIGRKPNTDGLGLENAGVELDDR 289
Query: 265 NYIWTMPDSTATSIPGIFAAGDVADER------YRQAITAA 299
+I D T++PGI+A GDV + AA
Sbjct: 290 GFIKV-DDQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAA 329
Score = 27.5 bits (61), Expect = 4.7
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
K DV+V+G G A+ A++ +V +V + L
Sbjct: 3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERL 39
>gnl|CDD|30795 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 75.7 bits (185), Expect = 2e-14
Identities = 66/321 (20%), Positives = 112/321 (34%), Gaps = 34/321 (10%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDW--L 64
I+I+G G AG +AA R +L + + G + + + G L
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSY-------YRCPLSLYVGGGIASL 53
Query: 65 MEQMRQQAENFGTKIIQDL---VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLR 121
+ N T I V S+D + +V G++ D +V+ATG+ +
Sbjct: 54 EDLRYPPRFNRATGIDVRTGTEVTSIDPENK--VVLLDDGEI-EYDYLVLATGARPRPPP 110
Query: 122 LE-SEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS- 179
+ E G KDV+VVG G E A AK ++VT++
Sbjct: 111 ISDWEGVVTLRLREDAEALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADR 170
Query: 180 ---SLRSEKILQE--KLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNF 234
L ++ +E +L + ++ L T+VV V G + R+
Sbjct: 171 LGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNT------LVVERVVGIDGE-- 222
Query: 235 FERNVDGIFIAIGYKPNTKIFRHQL--KMTNTNYIWTMPDSTATSIPGIFAAGDVADERY 292
E D + I G +PN + L + + P ++AAGDVA+
Sbjct: 223 -EIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281
Query: 293 RQAITAAAMGCMAALEVEHYL 313
+ + A +
Sbjct: 282 AETGKGGRIALWAIAVAAGRI 302
Score = 39.1 bits (90), Expect = 0.002
Identities = 50/255 (19%), Positives = 76/255 (29%), Gaps = 20/255 (7%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYPGFATSIRGDWLM 65
++++G+GP G AA AA+ K +I A LGGQL+ E + L
Sbjct: 138 DVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEV------------AEELA 185
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
E + + V V G+ AD V+I G E + L ++
Sbjct: 186 ELLEKYGVELLLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPG-ERPNVVLAND 244
Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIAR--RVTIVHRRSSLRS 183
D +KD V G+ A A K R I + +
Sbjct: 245 ALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAGRIAA 304
Query: 184 EKILQEKLF---LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVD 240
E I L + I + D G V V K +
Sbjct: 305 ENIAGALRIPGLLGTVISDVGDLCAAST-GLTEGKERGIDVVLVVSGGKDPRAHLYPGAE 363
Query: 241 GIFIAIGYKPNTKIF 255
+ I + +T
Sbjct: 364 LVGIKLVGDADTGRI 378
>gnl|CDD|36550 KOG1336, KOG1336, KOG1336, Monodehydroascorbate/ferredoxin
reductase [General function prediction only].
Length = 478
Score = 71.9 bits (176), Expect = 2e-13
Identities = 66/304 (21%), Positives = 106/304 (34%), Gaps = 31/304 (10%)
Query: 1 MASHDSKILIIGSGPAGYTAAIY--AARAMLKPVIIAGSDLGGQLMITESIENYPGFATS 58
+I+G GP G A + ++ L + F +
Sbjct: 70 AGYAARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYL-----LPYDRARLSKFLLT 124
Query: 59 IRGDWLMEQMRQQAENFGTKII-QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV 117
+ L ++ + + G ++I VV DL + +G+ ++IATGS
Sbjct: 125 VGEG-LAKRTPEFYKEKGIELILGTSVVKADLASK--TLVLGNGETLKYSKLIIATGSSA 181
Query: 118 KWLRL---ESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTI 174
K L + E + F + V+ VGGG E A L A+ VT+
Sbjct: 182 KTLDIPGVELKNVFYLREIEDANRLVAAIQLGGKVVCVGGGFIGMEVAAALVSKAKSVTV 241
Query: 175 VHRRS----SLRSEKILQ--EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHN 228
V L I Q E + + F T V + G+ VS V+L +
Sbjct: 242 VFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDG-----EVSEVKLKD 296
Query: 229 KKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVA 288
K D + + IG KPNT + + + I + TS+P ++A GDVA
Sbjct: 297 GK-----TLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKV-DEFFQTSVPNVYAIGDVA 350
Query: 289 DERY 292
Sbjct: 351 TFPL 354
>gnl|CDD|32255 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 68.6 bits (167), Expect = 2e-12
Identities = 56/319 (17%), Positives = 104/319 (32%), Gaps = 38/319 (11%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII--AGSDLGGQL------MIT------ 46
+ + + IIG+G +G AA +A + +I D+GG +
Sbjct: 4 GVATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKW 63
Query: 47 ---------ESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDL-VVSVDLDRHPFLV 96
E + FA I+ D++ + + + F + + V D D + V
Sbjct: 64 LLGFPFLPFRWDEAFAPFA-EIK-DYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTV 121
Query: 97 ETQSG--DLWHADAVVIATG--SEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVV 152
T G AD VV+ATG SE +F+G + + + + K V+V+
Sbjct: 122 TTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPEDLRGKRVLVI 181
Query: 153 GGGNTAAEEALHLAKIARRVTIVHRRSSL-----RSEKILQEKLFLQSNIDFLFDTEVVD 207
G G +A + A LA++ VT+ R + + +L L+ + +
Sbjct: 182 GAGASAVDIAPELAEVGASVTLSQRSPPHILPKPLLGEEVGGRLALRRALPAGWALRRGR 241
Query: 208 VI-GSIPEPPLFPSVSGVRLH-NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTN 265
V+ +P P+ V + P+ +L
Sbjct: 242 VLDALLPGAGYLPAFPAPDKRVEALLRAALRFLVLDAGVREDLGPDYAPGDGRLVPDGDL 301
Query: 266 YIWTMPDSTATSIPGIFAA 284
+ + I
Sbjct: 302 FE-AGASGDVEVVTEIIDR 319
>gnl|CDD|30839 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and
related oxidoreductases [Amino acid transport and
metabolism / General function prediction only].
Length = 457
Score = 68.0 bits (166), Expect = 3e-12
Identities = 77/347 (22%), Positives = 124/347 (35%), Gaps = 61/347 (17%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLME 66
K+ +IG+GPAG AA +RA + L G L++ I ++ + D +E
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY-GIPDFKLPKDIL--DRRLE 181
Query: 67 QMRQQAENF--GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLRLE 123
+ + F ++ +D+ + L + DAV +ATG+ + L +
Sbjct: 182 LLERSGVEFKLNVRVGRDITLEELLKEY--------------DAVFLATGAGKPRPLDIP 227
Query: 124 SE------------KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKI--A 169
E + + A K K V+V+GGG+TA + A A
Sbjct: 228 GEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAM-DCAGTALRLGA 286
Query: 170 RRVTIVHRR------------------SSLRSEKILQEKLFLQSNIDFLFDTE--VVDVI 209
+ VT +R S E + E+L F+ + V V
Sbjct: 287 KSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGV--ERLPFVQPKAFIGNEGGRVTGVK 344
Query: 210 GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNY 266
EP + G R G D + +AIG++ + LK+
Sbjct: 345 FGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGR 404
Query: 267 IWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYL 313
I + TSIPG+FA GD + A A G AA ++ L
Sbjct: 405 IKVDENLQQTSIPGVFAGGDAVRGA-ALVVWAIAEGREAAKAIDKEL 450
>gnl|CDD|36613 KOG1399, KOG1399, KOG1399, Flavin-containing monooxygenase
[Secondary metabolites biosynthesis, transport and
catabolism].
Length = 448
Score = 58.5 bits (141), Expect = 2e-09
Identities = 57/244 (23%), Positives = 94/244 (38%), Gaps = 47/244 (19%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIEN-------------- 51
+ +IG+GPAG AA R + V+ D+GG TE++E
Sbjct: 8 DVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLP 67
Query: 52 -----YPGFATSIRGDWLM-------EQMRQQAENFG-TKIIQDLVVSVDLDRHP---FL 95
Y F R E +R A++F K+I V +D +
Sbjct: 68 KEMMGYSDFPFPERDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWR 127
Query: 96 VETQSGDLWH----ADAVVIATG-------SEVKWLRLESEKKFQGFGVSACATCDGFFY 144
V T+ DAVV+ TG ++ +ES F+G + + +
Sbjct: 128 VTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPGPGIES---FKGKIIHSHDYKSPEKF 184
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK--ILQEKLFLQSNIDFLFD 202
++K V+VVG GN+ + +L L ++A+ V + + E IL E L+ +I +
Sbjct: 185 RDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVVSPKVHVEPPEILGENLWQVPSIKSFTE 244
Query: 203 TEVV 206
V
Sbjct: 245 DGSV 248
>gnl|CDD|143852 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 55.7 bits (135), Expect = 2e-08
Identities = 31/89 (34%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS------EKILQEKLFLQSNIDFLFD 202
V+VVGGG E A LAK+ +VT+V RR L KILQEKL ++ I+ L +
Sbjct: 2 VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEKLE-KNGIEVLLN 60
Query: 203 TEVVDVIGSIPEPPLFPSVSGVRLHNKKE 231
T V ++ G+ V L
Sbjct: 61 TTVEEIEGN-------GDGVLVVLETGDG 82
>gnl|CDD|36549 KOG1335, KOG1335, KOG1335, Dihydrolipoamide dehydrogenase [Energy
production and conversion].
Length = 506
Score = 54.5 bits (131), Expect = 4e-08
Identities = 69/334 (20%), Positives = 117/334 (35%), Gaps = 68/334 (20%)
Query: 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG--------------------Q 42
+D +++IG GP GY AAI AA+ LK + LGG
Sbjct: 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYH 97
Query: 43 LMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVD-------------L 89
E + +S+ D ++ M + +N ++ + L
Sbjct: 98 EAQHEDFASRGIDVSSVSLD--LQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFL 155
Query: 90 DRHPFLVETQSGDLWHADA--VVIATGSEVKWLRLESEKKFQGFGV--SACATCDGFF-- 143
D + V+ G+ A ++IATGSEV F G + + G
Sbjct: 156 DPNKVSVKKIDGEDQIIKAKNIIIATGSEV--------TPFPGITIDEKKIVSSTGALSL 207
Query: 144 -YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL------RSEKILQEKLFLQSN 196
K + V+G G E +++ VT+V + K Q L Q
Sbjct: 208 KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAFQRVLQKQG- 266
Query: 197 IDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--- 253
I F T+V + P + + N K G D + ++IG +P T+
Sbjct: 267 IKFKLGTKVTSATRNGDGPVE------IEVENAKTGKKETLECDVLLVSIGRRPFTEGLG 320
Query: 254 IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
+ + +++ + + T +P I+A GDV
Sbjct: 321 LEKIGIELDKRGRV-IVNTRFQTKVPHIYAIGDV 353
>gnl|CDD|39914 KOG4716, KOG4716, KOG4716, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 503
Score = 49.2 bits (117), Expect = 1e-06
Identities = 80/350 (22%), Positives = 129/350 (36%), Gaps = 83/350 (23%)
Query: 3 SHDSKILIIGSGPAGYT----AAIYAARAML----KPVIIAGS-DLGG----------QL 43
S+D +++IG G G AA A+ KP S LGG +L
Sbjct: 17 SYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKL 76
Query: 44 M-----ITESIENYPGFA-----TSIRGDW--LME--QMRQQAENFGTKII--QDLVVSV 87
M + E++ + + I+ DW L++ Q ++ N+G ++ + V +
Sbjct: 77 MHQAALLGEALHDARKYGWNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYI 136
Query: 88 D-----LDRHPFLVETQSG--DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCD 140
+ +D H + G A+ VIATG ++ + K++ T D
Sbjct: 137 NSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRYPDIPGAKEY-------GITSD 189
Query: 141 GFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR------SEKILQEKL 191
F Y+ +VVG G A E A L VT++ R LR +E + +
Sbjct: 190 DLFSLPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVA--EH 247
Query: 192 FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPN 251
+ I FL T V I + L V N G E D + AIG K
Sbjct: 248 MEERGIKFLRKTVPERV-EQIDDGKLR-----VFYKNTNTGEEGEEEYDTVLWAIGRKAL 301
Query: 252 T----------KIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291
T K K+ D AT++P ++A GD+ +++
Sbjct: 302 TDDLNLDNAGVKTNEKSGKIPVD-------DEEATNVPYVYAVGDILEDK 344
>gnl|CDD|31443 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and
conversion].
Length = 793
Score = 49.1 bits (117), Expect = 2e-06
Identities = 68/302 (22%), Positives = 117/302 (38%), Gaps = 41/302 (13%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY--PGFATSIRGDWL 64
K++IIG+G AG +L+ A + E NY ++ + G+
Sbjct: 5 KLVIIGNGMAG----HRTIEELLE---SAPDLYDITVFGEEPRPNYNRILLSSVLAGEKT 57
Query: 65 MEQMRQQAENFGTK-----IIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119
E + ++ + + V+ +D +V T +G D ++IATGS
Sbjct: 58 AEDISLNRNDWYEENGITLYTGEKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFI 115
Query: 120 LRLESEKKFQGFGVSACATCDGFF--YKNKD-VIVVGGGNTAAEEALHLAKIARRVTIVH 176
L + F + +NK +V+GGG E A L + VT+VH
Sbjct: 116 LPIPGSDLPGVFVYRTIDDVEAMLDCARNKKKAVVIGGGLLGLEAARGLKDLGMEVTVVH 175
Query: 177 RRSSLRSEKI-------LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNK 229
+L ++ L+ KL I L + +++G V GVR
Sbjct: 176 IAPTLMERQLDRTAGRLLRRKL-EDLGIKVLLEKNTEEIVGE-------DKVEGVRF--- 224
Query: 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVAD 289
+G E D + +A+G +PN ++ + N + + D TS P I+A G+ A+
Sbjct: 225 ADGT--EIPADLVVMAVGIRPNDELAKEAGLAVNRGIV--VNDYMQTSDPDIYAVGECAE 280
Query: 290 ER 291
R
Sbjct: 281 HR 282
>gnl|CDD|31444 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 47.1 bits (112), Expect = 6e-06
Identities = 68/336 (20%), Positives = 108/336 (32%), Gaps = 59/336 (17%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
M +I+I+G G G +AA AR + I L AT
Sbjct: 1 MMKK--RIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPL----LYEVATGTL 54
Query: 61 GDW-LMEQMRQQAENFG-TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVK 118
+ + +R G + +Q V +D D V D +V+A GSE
Sbjct: 55 SESEIAIPLRALLRKSGNVQFVQGEVTDIDRDAK--KVTLADLGEISYDYLVVALGSETN 112
Query: 119 WLR-------------LESEKKFQGFGVSACATCDGFFYKNK--DVIVVGGGNTAAEEAL 163
+ LE + + + A +++VGGG T E A
Sbjct: 113 YFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAG 172
Query: 164 HLAKIAR-------------RVTIVHRRSSL---RSEKILQ--EKLFLQSNIDFLFDTEV 205
LA+ RV +V + K+ + E+ + ++ L T V
Sbjct: 173 ELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPV 232
Query: 206 VDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTN-T 264
+V P GV L + +E E D + A G + + + T+
Sbjct: 233 TEV-----TP------DGVTLKDGEE----EIPADTVVWAAGVRASPLLKDLSGLETDRR 277
Query: 265 NYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAA 300
+ P P IFAAGD A + + A
Sbjct: 278 GRLVVNPTLQVPGHPDIFAAGDCAAVIDPRPVPPTA 313
>gnl|CDD|35626 KOG0405, KOG0405, KOG0405, Pyridine nucleotide-disulphide
oxidoreductase [Secondary metabolites biosynthesis,
transport and catabolism].
Length = 478
Score = 44.2 bits (104), Expect = 5e-05
Identities = 51/211 (24%), Positives = 82/211 (38%), Gaps = 31/211 (14%)
Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF---YKNKDVIVVGGGNTAAEEA 162
A ++IATG + G DGFF + K V+VVG G A E A
Sbjct: 154 AKHILIATGGRPIIPNIP--------GAELGIDSDGFFDLEEQPKRVVVVGAGYIAVEFA 205
Query: 163 LHLAKIARRVTIVHRRSS-LRS-EKILQEKL---FLQSNIDFLFDTEVVDVIGSIPEPPL 217
A + + R+ LR ++++ + + I+ ++ V VI + L
Sbjct: 206 GIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLEL 265
Query: 218 FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNTNYIWTMPDST 274
+ G +VD + AIG KPNTK + +K I + +
Sbjct: 266 VITSHGT-----------IEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAI-IVDEYQ 313
Query: 275 ATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
T++P I+A GDV + + AA +A
Sbjct: 314 NTNVPSIWAVGDVTGKINLTPVAIAAGRKLA 344
>gnl|CDD|32264 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 42.9 bits (101), Expect = 1e-04
Identities = 37/163 (22%), Positives = 65/163 (39%), Gaps = 58/163 (35%)
Query: 7 KILIIGSGPAGYTAAIYAARA------------MLKPVIIAGSDLGGQLMITES------ 48
++IIG GPAG AAI AA+A + + ++++G GG+ T S
Sbjct: 5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSG---GGRCNFTNSEAPDEF 61
Query: 49 IENYPGFATSIRG-----------DW-------------------------LMEQMRQQA 72
+ PG ++ DW +++ + ++
Sbjct: 62 LSRNPGNGHFLKSALARFTPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKEL 121
Query: 73 ENFGTKII-QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
E G I + V SV+ D F ++T SG+ D++++ATG
Sbjct: 122 EALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLILATG 164
Score = 27.1 bits (60), Expect = 7.7
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKIL 187
+ DVI++GGG A+ AK RRV ++ + L KIL
Sbjct: 2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKL-GRKIL 43
>gnl|CDD|30989 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 38.6 bits (89), Expect = 0.002
Identities = 37/195 (18%), Positives = 66/195 (33%), Gaps = 47/195 (24%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLG-----GQLMITESIENY-----PGFA 56
++I+G+GPAG +AA A+A L +++ GS+ G G + ++E
Sbjct: 6 VVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIE 65
Query: 57 TSIRGDWLM------------------------EQMRQQAENFGTKIIQDLVVSVDL--D 90
+ G + + + ++AE G ++ V+ + D
Sbjct: 66 RKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIRED 125
Query: 91 RHPFLVETQSGDLWHADAVVIATGSE---VKWLRLESEKK-------FQGFGVSACATCD 140
+ D A V+ A G + L L+ K + V +
Sbjct: 126 DGVVVGVRAGDDEVRAKVVIDADGVNSALARKLGLKDRKPEDYAIGVKEVIEVPDDGDVE 185
Query: 141 GFFYKNKDVIVVGGG 155
F Y DV G G
Sbjct: 186 EFLYGPLDVGPGGYG 200
Score = 32.8 bits (74), Expect = 0.12
Identities = 19/97 (19%), Positives = 36/97 (37%), Gaps = 10/97 (10%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVD 207
DV++VG G + A LAK V ++ + S ++ L ++
Sbjct: 5 DVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGL----------SPRALE 54
Query: 208 VIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFI 244
+ + + V+G R++ E E V +I
Sbjct: 55 ELIPDFDEEIERKVTGARIYFPGEKVAIEVPVGEGYI 91
>gnl|CDD|31822 COG1635, THI4, Flavoprotein involved in thiazole biosynthesis
[Coenzyme metabolism].
Length = 262
Score = 37.5 bits (87), Expect = 0.005
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII-------AGSDLGGQLM 44
+S ++I+G+GP+G TAA Y A+A LK I G GG L
Sbjct: 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLF 76
Score = 30.6 bits (69), Expect = 0.59
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
Y DVI+VG G + A +LAK +V I R+ S
Sbjct: 28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSF 65
>gnl|CDD|144475 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 37.3 bits (87), Expect = 0.005
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+++IGSG AG AA+ AA A LK ++ G
Sbjct: 2 VVVIGSGLAGLAAALEAAEAGLKVAVVEKGQPFG 35
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 37.4 bits (87), Expect = 0.006
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII-------AGSDLGGQL 43
+S ++I+G+GP+G TAA Y A+ LK II G+ GG L
Sbjct: 17 ESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLSPGGGAWGGGML 62
Score = 26.6 bits (59), Expect = 8.9
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
Y DV++VG G + A +LAK +V I+ R S
Sbjct: 15 YAESDVVIVGAGPSGLTAAYYLAKKGLKVAIIERSLS 51
>gnl|CDD|144651 pfam01134, GIDA, Glucose inhibited division protein A.
Length = 391
Score = 37.1 bits (87), Expect = 0.007
Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 49/154 (31%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIA---------------GSD-----------LG 40
+++IG G AG AA+ AAR K ++I G LG
Sbjct: 1 DVIVIGGGHAGCEAALAAARMGAKVLLITHNTDTIAELSCNPSIGGIAKGHLVREIDALG 60
Query: 41 GQLM-------ITESIENYP-GFATSIRGDWLMEQ---------MRQQAENF-GTKIIQD 82
G + I + N G A L Q M + EN +IQ
Sbjct: 61 GLMGKAADKTGIQFRMLNTSKGPA----VRALRAQVDRDLYSKEMTETLENHPNLTLIQG 116
Query: 83 LVVSVDLDRHPFL-VETQSGDLWHADAVVIATGS 115
V + + V T+ G+ + A AVVIATG+
Sbjct: 117 EVTDLIPENGKVKGVVTEDGEEYKAKAVVIATGT 150
Score = 27.5 bits (62), Expect = 4.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 148 DVIVVGGGNTAAEEALHLAK 167
DVIV+GGG+ E AL A+
Sbjct: 1 DVIVIGGGHAGCEAALAAAR 20
>gnl|CDD|35620 KOG0399, KOG0399, KOG0399, Glutamate synthase [Amino acid transport
and metabolism].
Length = 2142
Score = 36.5 bits (84), Expect = 0.011
Identities = 74/336 (22%), Positives = 111/336 (33%), Gaps = 85/336 (25%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLM 65
++ IIGSGPAG AA +A + SD +GG LM F R +
Sbjct: 1787 RVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRR----V 1842
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-------- 117
+ + Q+ F T VS+D L + DA+V+ATGS
Sbjct: 1843 DLLEQEGIRFVTNTEIGKHVSLD-----ELKKEN-------DAIVLATGSTTPRDLPVPG 1890
Query: 118 --------------KWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTA----A 159
K + + G +SA K K VIV+GGG+T
Sbjct: 1891 RDLKGVHFAMEFLEKNTKSLLDSVLDGNYISA---------KGKKVIVIGGGDTGTDCIG 1941
Query: 160 EEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFP 219
H K ++ + R+ + +D+ E + GS P
Sbjct: 1942 TSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDY-GHAEAKEHYGSDPRTY--- 1997
Query: 220 SVSGVRLHNKKEGNF---------FERNVDGIFIAIGYKPNTKIF--------------- 255
SV R GN +E++ G + + +I
Sbjct: 1998 SVLTKRFIGDDNGNVTGLETVRVEWEKDDKGRWQMKEINNSEEIIEADLVILAMGFVGPE 2057
Query: 256 -----RHQLKMTNTNYIWTMPDSTATSIPGIFAAGD 286
+ LK + I T DS +T + +FAAGD
Sbjct: 2058 KSVIEQLNLKTDPRSNILTPKDSYSTDVAKVFAAGD 2093
>gnl|CDD|31253 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 36.1 bits (83), Expect = 0.012
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
M H+ +++IG G AG AAI AA A LK ++
Sbjct: 2 MTIHEFDVVVIGGGGAGLRAAIEAAEAGLKVALL 35
Score = 28.0 bits (62), Expect = 3.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 266 YIWTMPDSTATSIPGIFAAGDVA 288
I T T IPG+FAAG+ A
Sbjct: 357 GIPTNTGRVETKIPGLFAAGEAA 379
Score = 27.2 bits (60), Expect = 5.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
DV+V+GGG A+ A+ +V ++ + R
Sbjct: 8 DVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRG 43
>gnl|CDD|33289 COG3486, IucD, Lysine/ornithine N-monooxygenase [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 436
Score = 35.2 bits (81), Expect = 0.023
Identities = 41/257 (15%), Positives = 78/257 (30%), Gaps = 61/257 (23%)
Query: 63 WLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWL-- 120
W Q+ FG ++ + D F V T +G ++ A +V+ G+ ++
Sbjct: 106 WAASQLPSL--RFGEEVTDISSLDGDAVVRLF-VVTANGTVYRARNLVLGVGT-QPYIPP 161
Query: 121 RLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHL-----------AKIA 169
S + F S + + V V+G G +AAE L L I
Sbjct: 162 CFRSLIGERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWIT 221
Query: 170 RR--------------------VTIVHRRSSLRSEKILQEKLFLQSNIDF-----LFDTE 204
R + +++L+++ L I F ++D
Sbjct: 222 RSSGFLPMDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLL 281
Query: 205 VVDVIGSIPEPP--LFPSVSGVRLHNKKEGNF------------FERNVDGIFIAIGYKP 250
+G +P L + +G + D + +A GY+
Sbjct: 282 YEQSLG-GRKPDVRLLSLSEVQSVEPAGDGRYRLTLRHHETGELETVETDAVILATGYRR 340
Query: 251 NTKIF----RHQLKMTN 263
F +L+ +
Sbjct: 341 AVPSFLEGLADRLQWDD 357
>gnl|CDD|109787 pfam00743, FMO-like, Flavin-binding monooxygenase-like. This
family includes FMO proteins and cyclohexanone
monooxygenase.
Length = 532
Score = 35.2 bits (81), Expect = 0.024
Identities = 53/222 (23%), Positives = 87/222 (39%), Gaps = 55/222 (24%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIE--------------- 50
K+ +IG+G +G ++ L+P S D+GG TE +E
Sbjct: 3 KVAVIGAGVSGLSSIKCCLEEGLEPTCFERSDDIGGLWRFTEHVEEGRASIYKSVVTNSS 62
Query: 51 -------------NYPGFATSIRGDWLMEQMRQQAENFGT-KIIQDLVVSVDLDRHPFLV 96
+YP F + +E +R A++F K IQ + + P
Sbjct: 63 KEMSCFSDFPFPEDYPNF---MHNSKFLEYLRMFAKHFDLLKYIQFKTTVCSVTKRPDFS 119
Query: 97 ET------------QSGDLWHADAVVIATGSEVK-WLRLES---EKKFQG--FGVSACAT 138
+ Q ++ DAV++ TG L LES KF+G F
Sbjct: 120 TSGQWEVVTEHEGKQESAVF--DAVMVCTGHHTNPHLPLESFPGINKFKGQYFHSRDYKH 177
Query: 139 CDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
+GF + K V+V+G GN+ + A+ L++ A +V + R S
Sbjct: 178 PEGF--QGKRVLVIGLGNSGGDIAVELSRTAAQVFLSTRTGS 217
>gnl|CDD|31426 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 35.1 bits (80), Expect = 0.030
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY 52
+++IG+G G AA ARA LK ++ +D G T ++ +
Sbjct: 5 DVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDGF 50
Score = 32.0 bits (72), Expect = 0.23
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
DV+V+G G A LA+ +VT++ +
Sbjct: 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKND 36
>gnl|CDD|144747 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 309
Score = 34.7 bits (80), Expect = 0.032
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 64 LMEQMRQQAENFGTKIIQDL-VVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
L+ + + AE G +I++ V ++ + VET G++ AD VV A G
Sbjct: 149 LLRALARAAEALGVEILEGTEVTGLEREGGGVTVETADGEI-RADKVVNAAG 199
Score = 29.3 bits (66), Expect = 1.3
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
DV+V+GGG A LA+ VT++ R
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERG 31
Score = 29.3 bits (66), Expect = 1.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+++IG G G + A AR L ++ DL
Sbjct: 1 DVVVIGGGIVGLSTAYELARRGLSVTLLERGDLAS 35
>gnl|CDD|37011 KOG1800, KOG1800, KOG1800, Ferredoxin/adrenodoxin reductase
[Nucleotide transport and metabolism].
Length = 468
Score = 34.6 bits (79), Expect = 0.034
Identities = 57/256 (22%), Positives = 85/256 (33%), Gaps = 60/256 (23%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYP-GFATSIR 60
S ++ I+GSGPAG+ Y A+ +LK A D+ E P F
Sbjct: 17 QSSTPRVCIVGSGPAGF----YTAQHLLKRHPNAHVDI---------FEKLPVPFGLVRY 63
Query: 61 GDWLMEQMRQQAENFGTKIIQD----LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116
G + N TK + +V + R L E DAVV+A G++
Sbjct: 64 GVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVGRDVSLKELTDN----YDAVVLAYGAD 119
Query: 117 VKWLRLE----------SEKKFQG-FGVSACATCDGFFYKNKDVIVVGGGNTA------- 158
RL+ S ++F G + + V++VG GN A
Sbjct: 120 -GDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARIL 178
Query: 159 -------------AEEALHLAKIA--RRVTIVHRRSSLRSE---KILQEKLFLQSNIDFL 200
+ AL+L K + + V +V RR L+ K L+E L L
Sbjct: 179 LSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLEL-PGARPR 237
Query: 201 FDTEVVDVIGSIPEPP 216
D
Sbjct: 238 LDPVDFSGKWMDESET 253
>gnl|CDD|30999 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and
related FAD-dependent oxidoreductases [Coenzyme
metabolism / Energy production and conversion].
Length = 387
Score = 34.3 bits (78), Expect = 0.045
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
+ I+G+GPAG A+ ARA L ++
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLL 31
Score = 30.8 bits (69), Expect = 0.48
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
K DV +VG G AL LA+ VT++ R
Sbjct: 1 KMLDVAIVGAGPAGLALALALARAGLDVTLLERAPR 36
>gnl|CDD|113586 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyses the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 34.2 bits (79), Expect = 0.052
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII 34
KI+I+G G AG+ AA ARA+ + +
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDV 28
>gnl|CDD|31342 COG1148, HdrA, Heterodisulfide reductase, subunit A and related
polyferredoxins [Energy production and conversion].
Length = 622
Score = 33.0 bits (75), Expect = 0.11
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGGQLM 44
+L+IG G AG TAA+ A K ++ +GG++
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMA 164
Score = 32.6 bits (74), Expect = 0.13
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 18/85 (21%)
Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLF------------- 192
+K V+V+GGG AL LA + +V +V + S+ K F
Sbjct: 124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPK 183
Query: 193 -----LQSNIDFLFDTEVVDVIGSI 212
NI+ + EV +V GS+
Sbjct: 184 MVEVSNHPNIELITYAEVEEVSGSV 208
>gnl|CDD|38055 KOG2844, KOG2844, KOG2844, Dimethylglycine dehydrogenase precursor
[Amino acid transport and metabolism].
Length = 856
Score = 33.0 bits (75), Expect = 0.11
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
DV+V+GGG+ A HLAK + ++ RS L S
Sbjct: 41 DVVVIGGGSLGCSTAYHLAKRGMKGAVLLERSRLTS 76
>gnl|CDD|146239 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 32.5 bits (75), Expect = 0.15
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 16/67 (23%)
Query: 7 KILIIGSGPAGYTAAIYAARA------------MLKPVIIAGSDLGGQLMITESIENYPG 54
+++IG G AG AAI AA+ + + ++I+G GG+ +T S+E
Sbjct: 2 DVIVIGGGAAGLMAAISAAKRGRRVLLIEKGKKLGRKILISG---GGRCNVTNSVE-PDN 57
Query: 55 FATSIRG 61
F + G
Sbjct: 58 FLSRYPG 64
>gnl|CDD|31009 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 32.6 bits (73), Expect = 0.15
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
DV+++GGG A +LA+ VT++
Sbjct: 3 MKMDVVIIGGGIVGLSAAYYLAERGADVTVLEAG 36
Score = 29.5 bits (65), Expect = 1.3
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
++IIG G G +AA Y A ++ + GG
Sbjct: 6 DVVIIGGGIVGLSAAYYLAERGADVTVLEAGEAGG 40
Score = 27.6 bits (60), Expect = 5.0
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Query: 64 LMEQMRQQAENFGTKII--QDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
L + AE G II V S++ D VET G + AD VV+A G+
Sbjct: 158 LTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGTI-EADKVVLAAGA 210
>gnl|CDD|37644 KOG2433, KOG2433, KOG2433, Uncharacterized conserved protein
[Function unknown].
Length = 577
Score = 32.3 bits (73), Expect = 0.16
Identities = 16/107 (14%), Positives = 37/107 (34%), Gaps = 7/107 (6%)
Query: 175 VHRRSSLRSEKILQEKLFLQSNIDFLFDTEV-VDVIGSIPEPPLFPSVSGVRLHNKKEGN 233
V +E + + + FL+S++ L + +++ G +P F R+ + +
Sbjct: 70 VIHVLFAYAEDLTENRQFLESSLSALIELRGNLNIDGILPGGQ-FTLQLTSRMLENRSIS 128
Query: 234 FFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPG 280
F + + + ++ Y W+ P S G
Sbjct: 129 EFLC-----DLNTMFNNEHVLMEGASCVSRVGYEWSRPQEDIKSAAG 170
>gnl|CDD|39055 KOG3851, KOG3851, KOG3851, Sulfide:quinone
oxidoreductase/flavo-binding protein [Energy production
and conversion].
Length = 446
Score = 32.3 bits (73), Expect = 0.17
Identities = 29/119 (24%), Positives = 49/119 (41%), Gaps = 18/119 (15%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY---PGFATS 58
A K+L++G G G A R + G + I E E++ PGF
Sbjct: 36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGS----------GSVGIVEPAEDHYYQPGFTLV 85
Query: 59 IRGDWLMEQMRQQAENF---GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
G ++ R++ + G I++ V + D++ V T+ G+ D +VIA G
Sbjct: 86 GGGLKSLDSSRRKQASLIPKGATWIKEKVKEFNPDKNT--VVTRGGEEISYDYLVIAMG 142
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 31.9 bits (73), Expect = 0.23
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
+L++G+G G A A+A VI+
Sbjct: 135 GDTVLVLGAGGVG-LLAAQLAKAAGARVIVTDRS 167
>gnl|CDD|30794 COG0445, GidA, NAD/FAD-utilizing enzyme apparently involved in cell
division [Cell division and chromosome partitioning].
Length = 621
Score = 31.7 bits (72), Expect = 0.30
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 66 EQMRQQAENF-GTKIIQDLVVSVDLDRHPFL--VETQSGDLWHADAVVIATGS 115
M+ + EN ++Q V + ++ + V T G +HA AVV+ TG+
Sbjct: 104 RAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGT 156
Score = 28.6 bits (64), Expect = 2.5
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 143 FYKNKDVIVVGGGNTAAEEALHLAKIARRVTIV 175
K DVIV+GGG+ E AL A++ + ++
Sbjct: 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLL 33
>gnl|CDD|36512 KOG1298, KOG1298, KOG1298, Squalene monooxygenase [Lipid transport
and metabolism].
Length = 509
Score = 31.4 bits (71), Expect = 0.31
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
DVI+VG G + A LAK RRV ++ R
Sbjct: 47 DVIIVGAGVAGSALAYALAKDGRRVHVIER 76
>gnl|CDD|31834 COG1648, CysG, Siroheme synthase (precorrin-2
oxidase/ferrochelatase domain) [Coenzyme metabolism].
Length = 210
Score = 31.4 bits (71), Expect = 0.33
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKL--FLQSNIDFLFD 202
+ K V+VVGGG+ A +A L K VT+V + +++E +++ D
Sbjct: 11 EGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL 70
Query: 203 TEVVDVIGSIPEPPL 217
+ VI + + L
Sbjct: 71 DDAFLVIAATDDEEL 85
>gnl|CDD|33910 COG4168, SapB, ABC-type antimicrobial peptide transport system,
permease component [Defense mechanisms].
Length = 321
Score = 31.4 bits (71), Expect = 0.34
Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 8/51 (15%)
Query: 42 QLMITESIENYPGFATSIRGDWLMEQMRQQAEN---FGTKIIQDLVVSVDL 89
MITES+ +PG G WL+ +RQQ G +I LV+ V++
Sbjct: 255 LAMITESVFGWPGI-----GRWLINAIRQQDYASISAGVIVIGSLVIIVNV 300
>gnl|CDD|31425 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism].
Length = 444
Score = 31.0 bits (70), Expect = 0.49
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 7 KILIIGSGPAGYTAAIYAARA--MLKPVII-AGSDLGGQLMITESIENYP 53
KI IIG G AG +AA +A ++ + A +GG L+ T I+ +
Sbjct: 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGG-LLRTVKIDGFL 50
>gnl|CDD|114453 pfam05728, UPF0227, Uncharacterized protein family (UPF0227).
Despite being classed as uncharacterized proteins, the
members of this family are almost certainly enzymes
that are distantly related to the pfam00561.
Length = 187
Score = 30.8 bits (70), Expect = 0.53
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIA 35
D L++GS GY A R L+ V+
Sbjct: 58 DDNPLLVGSSLGGYYATWLGFRCGLRQVLFN 88
>gnl|CDD|37966 KOG2755, KOG2755, KOG2755, Oxidoreductase [General function
prediction only].
Length = 334
Score = 30.7 bits (69), Expect = 0.57
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 228 NKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
+K++ + D I A G PN++ +++ + + D+ TS+P +FAAGDV
Sbjct: 260 DKEKMADNQLTCDFIVSATGVTPNSEWAMNKMLQITEDGGIKVDDAMETSLPDVFAAGDV 319
>gnl|CDD|109456 pfam00398, RrnaAD, Ribosomal RNA adenine dimethylase.
Length = 258
Score = 30.3 bits (69), Expect = 0.68
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 11/59 (18%)
Query: 164 HLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNI-----DFL-FDTEVVD---VIGSIP 213
LAK A++V + L K LQ+KL L N+ DFL F + V+G+IP
Sbjct: 47 ELAKRAKQVVAIEIDPRL--AKRLQKKLALHPNVEVVHQDFLKFSFPKHEPFLVVGNIP 103
>gnl|CDD|35252 KOG0029, KOG0029, KOG0029, Amine oxidase [Secondary metabolites
biosynthesis, transport and catabolism].
Length = 501
Score = 30.3 bits (68), Expect = 0.68
Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLM 44
A K+++IG+G AG +AA +++ D +GG++
Sbjct: 11 EAGKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIY 55
>gnl|CDD|30923 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 30.3 bits (68), Expect = 0.78
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRS-----SLRSEKIL 187
DVIV+GGG T A A A +V +V + S RS K++
Sbjct: 14 DVIVIGGGITGAGIARDAAGRGLKVALVEKGDLASGTSSRSTKLI 58
Score = 27.6 bits (61), Expect = 5.2
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+ + +++IG G G A AA LK ++ DL
Sbjct: 8 LRMEEFDVIVIGGGITGAGIARDAAGRGLKVALVEKGDLAS 48
>gnl|CDD|38323 KOG3113, KOG3113, KOG3113, Uncharacterized conserved protein
[Function unknown].
Length = 293
Score = 30.0 bits (67), Expect = 0.84
Identities = 17/62 (27%), Positives = 27/62 (43%), Gaps = 9/62 (14%)
Query: 124 SEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS 183
SE+ + S C C Y+ DVIV+ G EE + L + + R++ +
Sbjct: 138 SERALKEIKASVCHVCGA-AYQEDDVIVLNG----TEEDVDLL----KTRMEERKAKAKL 188
Query: 184 EK 185
EK
Sbjct: 189 EK 190
>gnl|CDD|107362 cd06367, PBP1_iGluR_NMDA, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptors. N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptors. While this N-terminal
domain belongs to the periplasmic-binding fold type I
superfamily, the glutamate-binding domain of the iGluR
is structurally homologous to the periplasmic-binding
fold type II. The LIVBP-like domain of iGluRs is thought
to play a role in the initial assembly of iGluR
subunits, but it is not well understood how this domain
is arranged and functions in intact iGluR. The function
of the NMDA subtype receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer comprising two NR1 and
two NR2 (A, B, C, and D) or NR3 (A and B) subunits. The
receptor controls a cation channel that is highly
permeable to monovalent ions and calcium and exhibits
voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 362
Score = 30.0 bits (68), Expect = 0.87
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 13/74 (17%)
Query: 254 IFR--HQLKMTNTNYIWTMPDSTATSI-------PGIFA----AGDVADERYRQAITAAA 300
IF L +T Y+W + + S G+ + R R A+ A
Sbjct: 210 IFEAAASLGLTGPGYVWIVGELALGSGLAPEGLPVGLLGVGLDTWYSLEARVRDAVAIVA 269
Query: 301 MGCMAALEVEHYLS 314
+ L + L
Sbjct: 270 RAAESLLRDKGALP 283
>gnl|CDD|38171 KOG2960, KOG2960, KOG2960, Protein involved in thiamine
biosynthesis and DNA damage tolerance [General function
prediction only].
Length = 328
Score = 30.0 bits (67), Expect = 0.89
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 9/48 (18%)
Query: 5 DSKILIIGSGPAGYTAAIYAA--RAMLKPVII-------AGSDLGGQL 43
+S ++I+G+G AG +AA A R LK II G+ LGGQL
Sbjct: 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWLGGQL 123
>gnl|CDD|48037 cd03442, BFIT_BACH, Brown fat-inducible thioesterase (BFIT). Brain
acyl-CoA hydrolase (BACH). These enzymes deacylate
long-chain fatty acids by hydrolyzing acyl-CoA
thioesters to free fatty acids and CoA-SH. Eukaryotic
members of this family are expressed in brain, testis,
and brown adipose tissues. The archeal and eukaryotic
members of this family have two tandem copies of the
conserved hot dog fold, while most bacterial members
have only one copy..
Length = 123
Score = 29.8 bits (67), Expect = 1.1
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 59 IRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
I G WL+E M + A + VV+ +DR FL + GD+ A V+ TG
Sbjct: 25 IFGGWLLEWMDELAGIAAYRHAGGRVVTASVDRIDFLKPVRVGDVVELSARVVYTG 80
>gnl|CDD|37825 KOG2614, KOG2614, KOG2614, Kynurenine 3-monooxygenase and related
flavoprotein monooxygenases [Energy production and
conversion, General function prediction only].
Length = 420
Score = 29.5 bits (66), Expect = 1.1
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE 184
K V++VGGG AL L + V ++ R R E
Sbjct: 1 KEPKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGE 40
>gnl|CDD|144912 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 29.6 bits (67), Expect = 1.1
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
++ +LI+G GPAG A+ ARA ++ V++
Sbjct: 1 ETDVLIVGGGPAGLMLALLLARAGVRVVLV 30
Score = 27.7 bits (62), Expect = 4.5
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
DV++VGGG AL LA+ RV +V R ++
Sbjct: 3 DVLIVGGGPAGLMLALLLARAGVRVVLVERHAT 35
>gnl|CDD|34178 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 147 KDVIVVGGGNTAAEEALHLAKIAR---RVTIVHRRSSL 181
V ++GGG + A HL K R ++I R +
Sbjct: 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39
>gnl|CDD|36277 KOG1059, KOG1059, KOG1059, Vesicle coat complex AP-3, delta subunit
[Intracellular trafficking, secretion, and vesicular
transport].
Length = 877
Score = 29.5 bits (66), Expect = 1.2
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 195 SNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242
+ ID F+ + D+I G+R H + E F + ++ I
Sbjct: 6 APIDRFFEKSLKDLI------------KGIRSHKEDEEKFISQCLEEI 41
>gnl|CDD|30379 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 29.5 bits (66), Expect = 1.2
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40
+LIIGSG AG TAA+ A + + ++ LG
Sbjct: 7 HPDVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLG 41
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 142 FFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
+++ DV+++G G AL LA + RVT++ +
Sbjct: 3 TDFEHPDVLIIGSGLAGLTAALSLAP-SFRVTVLTKGP 39
>gnl|CDD|32889 COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase
[Amino acid transport and metabolism].
Length = 421
Score = 29.1 bits (65), Expect = 1.6
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 6 SKILIIGSGPAGYTAAIYAARAMLKPVII 34
+ IIG G AG T + +A + I+
Sbjct: 3 FDVAIIGGGLAGLTCGLALQQAGKRCAIV 31
Score = 26.4 bits (58), Expect = 10.0
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 17/69 (24%)
Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEV 205
N DV ++GGG L L + +R IV+R QS + F +
Sbjct: 2 NFDVAIIGGGLAGLTCGLALQQAGKRCAIVNRG---------------QSALH--FSSGS 44
Query: 206 VDVIGSIPE 214
+D++G +P+
Sbjct: 45 LDLLGRLPD 53
>gnl|CDD|144908 pfam01488, Shikimate_DH, Shikimate / quinate 5-dehydrogenase. This
family contains both shikimate and quinate
dehydrogenases. Shikimate 5-dehydrogenase catalyses the
conversion of shikimate to 5-dehydroshikimate. This
reaction is part of the shikimate pathway which is
involved in the biosynthesis of aromatic amino acids.
Quinate 5-dehydrogenase catalyses the conversion of
quinate to 5-dehydroquinate. This reaction is part of
the quinate pathway where quinic acid is exploited as a
source of carbon in prokaryotes and microbial
eukaryotes. Both the shikimate and quinate pathways
share two common pathway metabolites 3-dehydroquinate
and dehydroshikimate.
Length = 134
Score = 29.2 bits (66), Expect = 1.7
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 144 YKNKDVIVVGGGNTAAEEALHL-AKIARRVTIVHR 177
K K V+++G G A A HL +K A+++TI +R
Sbjct: 10 LKGKKVLLIGAGEMARLAAKHLLSKGAKKITIANR 44
>gnl|CDD|30111 cd00757, ThiF_MoeB_HesA_family, ThiF_MoeB_HesA. Family of E1-like
enzymes involved in molybdopterin and thiamine
biosynthesis family. The common reaction mechanism
catalyzed by MoeB and ThiF, like other E1 enzymes,
begins with a nucleophilic attack of the C-terminal
carboxylate of MoaD and ThiS, respectively, on the
alpha-phosphate of an ATP molecule bound at the active
site of the activating enzymes, leading to the
formation of a high-energy acyladenylate intermediate
and subsequently to the formation of a thiocarboxylate
at the C termini of MoaD and ThiS. MoeB, as the MPT
synthase (MoaE/MoaD complex) sulfurase, is involved in
the biosynthesis of the molybdenum cofactor, a
derivative of the tricyclic pterin, molybdopterin
(MPT). ThiF catalyzes the adenylation of ThiS, as part
of the biosynthesis pathway of thiamin pyrophosphate
(vitamin B1). .
Length = 228
Score = 28.5 bits (64), Expect = 2.3
Identities = 10/34 (29%), Positives = 20/34 (58%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
++++L++G+G G AA Y A A + + + D
Sbjct: 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54
>gnl|CDD|32579 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 28.7 bits (64), Expect = 2.3
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 64 LMEQMRQQAENFGTKII-QDLVVSVDL-DRHPFLVETQSGDLWHADAVVIATG-SEVKWL 120
+++ +R+ E+ G +I V +++ D V+ G+ AD VV+A G S W
Sbjct: 175 VVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGRSGRDWF 234
Query: 121 RLESEK 126
+ +K
Sbjct: 235 EMLHKK 240
Score = 28.3 bits (63), Expect = 3.1
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 272 DSTATSIPGIFAAGDVADERYRQAITAAAMGCMAA 306
+ +TSI G++ AGD A R ++AAA G AA
Sbjct: 443 EDLSTSIKGLYPAGDGAGLA-RGIVSAAADGIKAA 476
>gnl|CDD|32731 COG2907, COG2907, Predicted NAD/FAD-binding protein [General
function prediction only].
Length = 447
Score = 28.4 bits (63), Expect = 3.0
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ 42
KI +IGSG +G +AA +R + A LGG
Sbjct: 10 KIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGH 45
>gnl|CDD|32458 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 28.1 bits (62), Expect = 3.1
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIR 60
+ +I+GSG AG A + A L +++ G I+ +A +
Sbjct: 3 EMKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLE----AGGPDRRPLIQMPAAYAFLMN 58
Query: 61 GDWLMEQMRQQAE 73
G R + E
Sbjct: 59 GPRYDWGFRTEPE 71
>gnl|CDD|30722 COG0373, HemA, Glutamyl-tRNA reductase [Coenzyme metabolism].
Length = 414
Score = 28.3 bits (63), Expect = 3.1
Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 145 KNKDVIVVGGGNTAAEEALHLA-KIARRVTIVHR---RSSLRSEKILQEKLFLQSNIDFL 200
K+K V+V+G G A HLA K +++TI +R R+ ++K+ E + L+ ++ L
Sbjct: 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEAL 236
Query: 201 FDTEVVDVIGSIPEP 215
+ +VV S P P
Sbjct: 237 AEADVVISSTSAPHP 251
>gnl|CDD|30371 COG0021, TktA, Transketolase [Carbohydrate transport and
metabolism].
Length = 663
Score = 28.2 bits (63), Expect = 3.2
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSA 135
D ++IATGSEV L +E+ K+ + G+
Sbjct: 549 PDVILIATGSEV-ELAVEAAKELEAEGIKV 577
>gnl|CDD|38064 KOG2853, KOG2853, KOG2853, Possible oxidoreductase [General
function prediction only].
Length = 509
Score = 28.0 bits (62), Expect = 3.2
Identities = 27/115 (23%), Positives = 47/115 (40%), Gaps = 18/115 (15%)
Query: 143 FYKNKDVIVVGGGNTAAEEALHLAKIAR----RVTIVHR------RSSLRSEKILQEKLF 192
F + DV+++GGG + + A L + AR V +V R S++ S + ++
Sbjct: 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSSTMLSVGGICQQFS 142
Query: 193 LQSNIDF-LFDTEVVDVIG------SIPEPPLFPSVSG-VRLHNKKEGNFFERNV 239
L NI LF E + + L +G +RL +++E N
Sbjct: 143 LPENIQMSLFTAEFLRNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNS 197
>gnl|CDD|143522 cd06964, NR_DBD_RAR, DNA-binding domain of retinoic acid receptor
(RAR) is composed of two C4-type zinc fingers.
DNA-binding domain of retinoic acid receptor (RAR) is
composed of two C4-type zinc fingers. Each zinc finger
contains a group of four Cys residues which co-ordinates
a single zinc atom. RAR interacts with specific DNA
sites upstream of the target gene and modulates the rate
of transcriptional initiation. RARs mediate the
biological effect of retinoids, including both natural
dietary vitamin A (retinol) metabolites and active
synthetic analogs. Retinoids play key roles in a wide
variety of essential biological processes, such as
vertebrate embryonic morphogenesis and organogenesis,
differentiation and apoptosis, and homeostasis. RAR
function as a heterodimer with retinoic X receptor by
binding to specific RAR response elements (RAREs), which
are composed of two direct repeats of the consensus
sequence 5'-AGGTCA-3' separated by one to five base pair
and found in the promoter regions of retinoid target
genes. Like other members of the nuclear receptor (NR)
superfamily of ligand-activated transcription factors,
retinoic acid receptors have a central well conserved
DNA binding domain (DBD), a variable N-terminal domain,
a non-conserved hinge and a C-terminal ligand binding
domain (LBD).
Length = 85
Score = 28.0 bits (62), Expect = 3.8
Identities = 9/13 (69%), Positives = 10/13 (76%)
Query: 131 FGVSACATCDGFF 143
+GVSAC C GFF
Sbjct: 19 YGVSACEGCKGFF 31
>gnl|CDD|80317 cd04371, DEP, DEP domain, named after Dishevelled, Egl-10, and
Pleckstrin, where this domain was first discovered. The
function of this domain is still not clear, but it is
believed to be important for the membrane association
of the signaling proteins in which it is present. New
studies show that the DEP domain of Sst2, a yeast RGS
protein is necessary and sufficient for receptor
interaction..
Length = 81
Score = 28.0 bits (62), Expect = 3.9
Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
Query: 62 DWLMEQM----RQQAENFGTKII-QDLVVSVDLDRHPFL 95
DWL++ + R++A G ++ L+ V D+H F
Sbjct: 36 DWLLDNLEAITREEAVELGQALLKHGLIHHVSDDKHTFR 74
>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the
zinc-dependent alcohol dehydrogenases (ADH). This group
contains the hypothetical TM0436 alcohol dehydrogenase
from Thermotoga maritima, proteins annotated as
5-exo-alcohol dehydrogenase, and other members of the
medium chain dehydrogenases/reductase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
MDR, which contains the zinc-dependent alcohol
dehydrogenase (ADH-Zn) and related proteins, is a
diverse group of proteins related to the first
identified member, class I mammalian ADH. MDRs display
a broad range of activities and are distinguished from
the smaller short chain dehydrogenases (~ 250 amino
acids vs. the ~ 350 amino acids of the MDR). The MDR
proteins have 2 domains: a C-terminal NAD(P)
binding-Rossmann fold domain of a beta-alpha form and an
N-terminal catalytic domain with distant homology to
GroES. The MDR group contains a host of activities,
including the founding alcohol dehydrogenase (ADH),
quinone reductase, sorbitol dehydrogenase, formaldehyde
dehydrogenase, butanediol DH, ketose reductase, cinnamyl
reductase, and numerous others. The zinc-dependent
alcohol dehydrogenases (ADHs) catalyze the
NAD(P)(H)-dependent interconversion of alcohols to
aldehydes or ketones. Active site zinc has a catalytic
role, while structural zinc aids in stability.
Length = 361
Score = 28.0 bits (63), Expect = 3.9
Identities = 21/107 (19%), Positives = 33/107 (30%), Gaps = 29/107 (27%)
Query: 9 LIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQM 68
++ G+GP G A A A + VI+ +
Sbjct: 182 VVQGAGPLGLYAVAAAKLAGARRVIVIDGS---------------------------PER 214
Query: 69 RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGS 115
+ A FG D+ D R + + G AD V+ A+G
Sbjct: 215 LELAREFGADATIDIDELPDPQRRAIVRDITGGRG--ADVVIEASGH 259
>gnl|CDD|37626 KOG2415, KOG2415, KOG2415, Electron transfer flavoprotein
ubiquinone oxidoreductase [Energy production and
conversion].
Length = 621
Score = 28.0 bits (62), Expect = 3.9
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 9/69 (13%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKP-------VIIAGSDLGGQLMITESIENYPG 54
S + ++I+G+GPAG +AAI + K V+ +++GG + IE PG
Sbjct: 73 ESEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGAVIE--PG 130
Query: 55 FATSIRGDW 63
+ DW
Sbjct: 131 ALDELLPDW 139
>gnl|CDD|112521 pfam03711, OKR_DC_1_C, Orn/Lys/Arg decarboxylase, C-terminal
domain.
Length = 137
Score = 28.0 bits (63), Expect = 3.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 43 LMITESIENYPGFATSIRG 61
L + E ++PGF I+G
Sbjct: 110 LALEEFGNHFPGFEPEIQG 128
>gnl|CDD|33316 COG3513, COG3513, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 1088
Score = 27.7 bits (61), Expect = 4.1
Identities = 19/106 (17%), Positives = 33/106 (31%), Gaps = 24/106 (22%)
Query: 102 DLWHA-DAVVIATGSEVKWLRLESEKKFQGFGV-----------SACATCDGFFYKN--- 146
+ HA DAVV+A + +LE + + A FY N
Sbjct: 733 NYHHAHDAVVVACALNSMYPKLERFFVYGEYNSYDLYKANSDQEIGKAISKKLFYPNIMK 792
Query: 147 ----KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQ 188
+ I V G + + V + S R + +++
Sbjct: 793 FFAQEVRIRVFDGEPGEILW-----DKKYLDTVKKVLSGRQQNVVK 833
>gnl|CDD|38031 KOG2820, KOG2820, KOG2820, FAD-dependent oxidoreductase [General
function prediction only].
Length = 399
Score = 27.6 bits (61), Expect = 4.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
K++DVI+VG G A LAK ++ ++ +
Sbjct: 6 KSRDVIIVGAGVFGLSTAYELAKRGDKILLLEQ 38
>gnl|CDD|146292 pfam03575, Peptidase_S51, Peptidase family S51.
Length = 154
Score = 27.6 bits (62), Expect = 5.1
Identities = 13/27 (48%), Positives = 14/27 (51%), Gaps = 5/27 (18%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARR 171
DVI VGGGNT HL K+ R
Sbjct: 34 LKADVIYVGGGNTF-----HLLKLLRE 55
>gnl|CDD|30824 COG0476, ThiF, Dinucleotide-utilizing enzymes involved in
molybdopterin and thiamine biosynthesis family 2
[Coenzyme metabolism].
Length = 254
Score = 27.3 bits (60), Expect = 5.5
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG------SDLGGQLMITES 48
DS++L++G+G G AA Y A A + + I S+L Q + TE+
Sbjct: 30 DSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEA 79
>gnl|CDD|31238 COG1035, FrhB, Coenzyme F420-reducing hydrogenase, beta subunit
[Energy production and conversion].
Length = 332
Score = 27.2 bits (60), Expect = 5.5
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 17/68 (25%)
Query: 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFF 143
V +D+ + F+VE + G EVK + L K+ + +G C C F
Sbjct: 206 VEKMDIRKGKFVVELKDG--------------EVKEIPL---KETEEYGPEGCRVCTDFV 248
Query: 144 YKNKDVIV 151
+ D+ V
Sbjct: 249 AELADISV 256
>gnl|CDD|37522 KOG2311, KOG2311, KOG2311, NAD/FAD-utilizing protein possibly
involved in translation [Translation, ribosomal
structure and biogenesis].
Length = 679
Score = 27.2 bits (60), Expect = 5.9
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
DV+V+GGG+ E A A++ R ++
Sbjct: 30 DVVVIGGGHAGCEAAAAAARLGARTLLL 57
>gnl|CDD|173942 cd08183, Fe-ADH2, Iron-containing alcohol dehydrogenases-like.
Iron-containing alcohol dehydrogenases (Fe-ADH). Alcohol
dehydrogenase catalyzes the reduction of acetaldehyde to
alcohol with NADP as cofactor. Its activity requires
iron ions. The protein structure represents a
dehydroquinate synthase-like fold and is a member of the
iron-activated alcohol dehydrogenase-like family. They
are distinct from other alcohol dehydrogenases which
contains different protein domain. Proteins of this
family have not been characterized. Their specific
function is unknown. They are mainly found in bacteria.
Length = 374
Score = 27.1 bits (61), Expect = 6.1
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 10/66 (15%)
Query: 150 IVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVI 209
I G G A E A++ RRV +V SSLR+ +++ + I+ V +
Sbjct: 4 IHFGRG-VAKELPALAAELGRRVLLVTGASSLRAAWLIEA--LRAAGIE-------VTHV 53
Query: 210 GSIPEP 215
EP
Sbjct: 54 VVAGEP 59
>gnl|CDD|153240 cd03146, GAT1_Peptidase_E, Type 1 glutamine amidotransferase
(GATase1)-like domain found in peptidase E. Type 1
glutamine amidotransferase (GATase1)-like domain found
in peptidase E. This group contains proteins similar to
the aspartyl dipeptidases Salmonella typhimurium
peptidase E and Xenopus laevis peptidase E. In bacteria
peptidase E is believed to play a role in degrading
peptides generated by intracellular protein breakdown or
imported into the cell as nutrient sources. Peptidase E
uniquely hydrolyses only Asp-X dipeptides (where X is
any amino acid), and one tripeptide Asp-Gly-Gly.
Peptidase E is believed to be a serine peptidase having
a Ser-His-Glu catalytic triad which differs from the
Cys-His-Glu catalytic triad typical of GATase1 domains
by having a Ser in place of the reactive Cys at the
nucleophile elbow. Xenopus PepE is developmentally
regulated in response to thyroid hormone and, it is
thought to play a role in apoptosis during tail
reabsorption.
Length = 212
Score = 27.2 bits (61), Expect = 6.6
Identities = 12/29 (41%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 148 DVIVVGGGNT----AAEEALHLAKIARRV 172
DVI VGGGNT A L I +
Sbjct: 82 DVIYVGGGNTFNLLAQWREHGLDAILKAA 110
>gnl|CDD|30908 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope biogenesis,
outer membrane].
Length = 374
Score = 27.1 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
D ++VG G + A A A++ +RV IV +R+ +
Sbjct: 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHI 36
>gnl|CDD|107373 cd06378, PBP1_iGluR_NMDA_NR2, N-terminal
leucine/isoleucine/valine-binding protein (LIVBP)-like
domain of the NR2 subunit of NMDA receptor family.
N-terminal leucine/isoleucine/valine-binding protein
(LIVBP)-like domain of the NR2 subunit of NMDA receptor
family. The ionotropic N-methyl-d-asparate (NMDA)
subtype of glutamate receptor serves critical functions
in neuronal development, functioning, and degeneration
in the mammalian central nervous system. The functional
NMDA receptor is a heterotetramer composed of two NR1
and two NR2 (A, B, C, and D) or of NR3 (A and B)
subunits. The receptor controls a cation channel that is
highly permeable to monovalent ions and calcium and
exhibits voltage-dependent inhibition by magnesium. Dual
agonists, glutamate and glycine, are required for
efficient activation of the NMDA receptor. Among NMDA
receptor subtypes, the NR2B subunit containing receptors
appear particularly important for pain perception; thus
NR2B-selective antagonists may be useful in the
treatment of chronic pain.
Length = 362
Score = 26.9 bits (60), Expect = 6.8
Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 15/70 (21%)
Query: 254 IFR--HQLKMTNTNYIWTMPDSTATS---IPGIFAAGDVA----------DERYRQAITA 298
IFR +T Y+W +P + P F G ++ R R +
Sbjct: 209 IFRAARSAGLTGPGYVWIVPSLVLGNTDLGPSEFPVGLISVSYDGWRYSLRARVRDGVAI 268
Query: 299 AAMGCMAALE 308
A G A L
Sbjct: 269 IATGASAMLR 278
>gnl|CDD|37321 KOG2110, KOG2110, KOG2110, Uncharacterized conserved protein,
contains WD40 repeats [Function unknown].
Length = 391
Score = 26.8 bits (59), Expect = 7.4
Identities = 10/29 (34%), Positives = 13/29 (44%)
Query: 228 NKKEGNFFERNVDGIFIAIGYKPNTKIFR 256
K NF N D +++G K KIF
Sbjct: 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFS 32
>gnl|CDD|107290 cd06295, PBP1_CelR, Ligand binding domain of a transcription
regulator of cellulose genes, CelR, which is highly
homologous to the LacI-GalR family of bacterial
transcription regulators. This group includes the
ligand binding domain of a transcription regulator of
cellulose genes, CelR, which is highly homologous to the
LacI-GalR family of bacterial transcription regulators.
The binding of CelR to the celE promoter is inhibited
specifically by cellobiose. The LacI-GalR family
repressors are composed of two functional domains: an
N-terminal HTH (helix-turn-helix) domain, which is
responsible for the DNA-binding specificity, and a
C-terminal ligand-binding domain, which is homologous to
the sugar-binding domain of ABC-type transport systems
that contain the type I periplasmic binding protein-like
fold. As also observed in the periplasmic binding
proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 275
Score = 26.8 bits (60), Expect = 8.0
Identities = 9/47 (19%), Positives = 15/47 (31%), Gaps = 2/47 (4%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPG 54
+++IG P ++ G L GQ +N G
Sbjct: 68 VILIGQH--DQDPLPERLAETGLPFVVWGRPLPGQPYCYVGSDNVGG 112
>gnl|CDD|133452 cd05213, NAD_bind_Glutamyl_tRNA_reduct, NADP-binding domain of
glutamyl-tRNA reductase. Glutamyl-tRNA reductase
catalyzes the conversion of glutamyl-tRNA to
glutamate-1-semialdehyde, initiating the synthesis of
tetrapyrrole. Whereas tRNAs are generally associated
with peptide bond formation in protein translation, here
the tRNA activates glutamate in the initiation of
tetrapyrrole biosynthesis in archaea, plants and many
bacteria. In the first step, activated glutamate is
reduced to glutamate-1-semi-aldehyde via the NADPH
dependent glutamyl-tRNA reductase. Glutamyl-tRNA
reductase forms a V-shaped dimer. Each monomer has 3
domains: an N-terminal catalytic domain, a classic
nucleotide binding domain, and a C-terminal dimerization
domain. Although the representative structure 1GPJ lacks
a bound NADPH, a theoretical binding pocket has been
described. (PMID 11172694). Amino acid dehydrogenase
(DH)-like NAD(P)-binding domains are members of the
Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 311
Score = 26.8 bits (60), Expect = 8.4
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 145 KNKDVIVVGGGNTAAEEALHLA-KIARRVTIVHR 177
K K V+V+G G A HLA K +TI +R
Sbjct: 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANR 210
>gnl|CDD|143592 cd07568, ML_beta-AS_like, mammalian-like beta-alanine synthase
(beta-AS) and similar proteins (class 5 nitrilases).
This family includes mammalian-like beta-AS (EC 3.5.1.6,
also known as beta-ureidopropionase or
N-carbamoyl-beta-alanine amidohydrolase). This enzyme
catalyzes the third and final step in the catabolic
pyrimidine catabolic pathway responsible for the
degradation of uracil and thymine, the hydrolysis of
N-carbamyl-beta-alanine and
N-carbamyl-beta-aminoisobutyrate to the beta-amino
acids, beta-alanine and beta-aminoisobutyrate
respectively. This family belongs to a larger nitrilase
superfamily comprised of nitrile- or amide-hydrolyzing
enzymes and amide-condensing enzymes, which depend on a
Glu-Lys-Cys catalytic triad. This superfamily has been
classified in the literature based on global and
structure based sequence analysis into thirteen
different enzyme classes (referred to as 1-13), this
subgroup corresponds to class 5. Members of this
superfamily generally form homomeric complexes, the
basic building block of which is a homodimer. Beta-ASs
from this subgroup are found in various oligomeric
states, dimer (human), hexamer (calf liver), decamer
(Arabidopsis and Zea mays), and in the case of
Drosophila melanogaster beta-AS, as a homooctamer
assembled as a left-handed helical turn, with the
possibility of higher order oligomers formed by adding
dimers at either end. Rat beta-AS changes its oligomeric
state (hexamer, trimer, dodecamer) in response to
allosteric effectors. Eukaryotic Saccharomyces kluyveri
beta-AS belongs to a different superfamily.
Length = 287
Score = 26.7 bits (59), Expect = 8.9
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 26/122 (21%)
Query: 9 LIIGSGPAGYTAAIYAAR-AML---KPVIIAGSDLGGQLMITESIENYPGFATSIRGDW- 63
LI S A I + AM+ +I ++ G Q++ + I P F W
Sbjct: 8 LIQASNVIPTDAPIEKQKEAMIQKHVTMIREAAEAGAQIVCLQEIFYGPYFCAEQDTKWY 67
Query: 64 ----------LMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIAT 113
++ A+ + +I P + Q G L++ AV+ A
Sbjct: 68 EFAEEIPNGPTTKRFAALAKEYNMVLI-----------LPIYEKEQGGTLYNTAAVIDAD 116
Query: 114 GS 115
G+
Sbjct: 117 GT 118
>gnl|CDD|35408 KOG0187, KOG0187, KOG0187, 40S ribosomal protein S17 [Translation,
ribosomal structure and biogenesis].
Length = 134
Score = 26.4 bits (58), Expect = 9.6
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 175 VHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH 227
V ++ ++ +++ EK + + +DF + V + + IP L ++G H
Sbjct: 4 VRTKTVKKAARVIIEKYYTRLTLDFHTNKRVCEEVAIIPSKKLRNKIAGYVTH 56
>gnl|CDD|107302 cd06307, PBP1_uncharacterized_sugar_binding, Periplasmic
sugar-binding domain of uncharacterized transport
systems. Periplasmic sugar-binding domain of
uncharacterized transport systems that share homology
with a family of pentose/hexose sugar-binding proteins
of the type I periplasmic binding protein (PBP1)
superfamily. The members of this group are predicted to
be involved in the transport of sugar-containing
molecules across cellular and organellar membranes.
Length = 275
Score = 26.7 bits (60), Expect = 9.7
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 1/27 (3%)
Query: 151 VVGGGNTAAEEAL-HLAKIARRVTIVH 176
GGGN AL + + V + H
Sbjct: 192 NAGGGNRGVIRALREAGRAGKVVFVGH 218
>gnl|CDD|146932 pfam04536, DUF477, Domain of unknown function (DUF477). The
function of this presumed domain is unknown. It is found
in both eukarya and eubacteria.
Length = 124
Score = 26.4 bits (59), Expect = 9.8
Identities = 8/41 (19%), Positives = 12/41 (29%)
Query: 270 MPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVE 310
+PD+ I Y + + AA A L
Sbjct: 84 LPDARWDRIIDDTIVPAFRQGDYAEGLVAAIDAIGAVLAGH 124
>gnl|CDD|32964 COG3150, COG3150, Predicted esterase [General function prediction
only].
Length = 191
Score = 26.4 bits (58), Expect = 9.9
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
D LI+GS GY A ++ V+
Sbjct: 58 DESPLIVGSSLGGYYATWLGFLCGIRAVVF 87
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0684 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 3,904,650
Number of extensions: 207843
Number of successful extensions: 907
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 148
Length of query: 321
Length of database: 6,263,737
Length adjustment: 94
Effective length of query: 227
Effective length of database: 4,232,491
Effective search space: 960775457
Effective search space used: 960775457
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)