RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddB
21,608 sequences; 5,994,473 total letters
Searching..................................................done
Query= gi|254780283|ref|YP_003064696.1| thioredoxin reductase (NADPH)
protein [Candidatus Liberibacter asiaticus str. psy62]
(321 letters)
>gnl|CDD|162288 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase. This model
describes thioredoxin-disulfide reductase, a member of
the pyridine nucleotide-disulphide oxidoreductases
(PFAM:PF00070).
Length = 300
Score = 410 bits (1056), Expect = e-115
Identities = 156/308 (50%), Positives = 210/308 (68%), Gaps = 8/308 (2%)
Query: 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
++IIG+GPAG TAAIYAARA LK +II G + GGQL T +ENYPGF I G LM
Sbjct: 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELM 60
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
E+M++QA FG +II + V+ VDL PF V+T G + A AV+IATG+ + L + E
Sbjct: 61 EKMKEQAVKFGAEIIYEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGE 120
Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK 185
+F G GVS CATCDG F+KNK+V VVGGG++A EEAL+L +IA++VT+VHRR R+EK
Sbjct: 121 DEFLGRGVSYCATCDGPFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRDKFRAEK 180
Query: 186 ILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIA 245
IL ++L NI+FL+++ V +++G V GV++ N G E VDG+FIA
Sbjct: 181 ILLDRLRKNPNIEFLWNSTVKEIVGD-------NKVEGVKIKNTVTGEEEELKVDGVFIA 233
Query: 246 IGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
IG++PNT++ + L++ YI T + TS+PG+FAAGDV D+ YRQA+TAA GC+A
Sbjct: 234 IGHEPNTELLKGLLELDEGGYIVT-DEGMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIA 292
Query: 306 ALEVEHYL 313
AL E YL
Sbjct: 293 ALSAERYL 300
>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional.
Length = 321
Score = 288 bits (738), Expect = 1e-78
Identities = 157/316 (49%), Positives = 208/316 (65%), Gaps = 16/316 (5%)
Query: 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
SK+LI+GSGPAGYTAA+YAARA L+PV+I G + GGQL T +EN+PG + G LM
Sbjct: 7 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLM 66
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
E+M + A F T+II D + VDL PF + SG+ + DA++IATG+ ++L L SE
Sbjct: 67 ERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGE-YTCDALIIATGASARYLGLPSE 125
Query: 126 KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK 185
+ F+G GVSACATCDGFFY+N+ V V+GGGNTA EEAL+L+ IA V ++HRR R+EK
Sbjct: 126 EAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEK 185
Query: 186 ILQEKLF---LQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFER-NVDG 241
IL ++L NI + + +V G V+GVRL + + + E +V G
Sbjct: 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ------MGVTGVRLRDTQNSDNIESLDVAG 239
Query: 242 IFIAIGYKPNTKIFRHQLKMTNTNYIWTMP----DSTATSIPGIFAAGDVADERYRQAIT 297
+F+AIG+ PNT IF QL++ N YI ++T TSIPG+FAAGDV D YRQAIT
Sbjct: 240 LFVAIGHSPNTAIFEGQLELEN-GYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAIT 298
Query: 298 AAAMGCMAALEVEHYL 313
+A GCMAAL+ E YL
Sbjct: 299 SAGTGCMAALDAERYL 314
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one C
subunit in the genome and that genome is lacking the F
subunit partner (also a thioredcxin reductase homolog)
that is usually found (TIGR03140).
Length = 555
Score = 233 bits (597), Expect = 3e-62
Identities = 118/310 (38%), Positives = 178/310 (57%), Gaps = 12/310 (3%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ 67
++IIG GPAG +A IYA RA L +II D GGQ+ IT + NYPG + G LM++
Sbjct: 7 LIIIGGGPAGLSAGIYAGRAKLDTLIIEKDDFGGQITITSEVVNYPGIL-NTTGPELMQE 65
Query: 68 MRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKK 127
MRQQA++FG K +Q V+ VD D ++T GD AV+IATG+ + L E++
Sbjct: 66 MRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDY-KTLAVLIATGASPRKLGFPGEEE 124
Query: 128 FQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKIL 187
F G GV+ CATCDG F+ DV V+GGG AAEEA+ L + A +VT++ R K++
Sbjct: 125 FTGRGVAYCATCDGEFFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDFTCAKLI 184
Query: 188 QEKLFLQSNIDFLFDTEVVDVIGS--IPEPPLFPSVSG--VRLHNKKEGNFFERNVDGIF 243
EK+ I+ F+TE+ + G + +V+G K+ F G+F
Sbjct: 185 AEKVKNHPKIEVKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTF-----GVF 239
Query: 244 IAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGC 303
+ +GY P++++F+ +++ YI T + T++PG++AAGD+ + RQ +TA A G
Sbjct: 240 VFVGYAPSSELFKGVVELDKRGYIPT-NEDMETNVPGVYAAGDLRPKELRQVVTAVADGA 298
Query: 304 MAALEVEHYL 313
+AA E Y+
Sbjct: 299 IAATSAERYV 308
>gnl|CDD|163151 TIGR03140, AhpF, alkyl hydroperoxide reductase, F subunit. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Length = 515
Score = 194 bits (494), Expect = 3e-50
Identities = 104/307 (33%), Positives = 171/307 (55%), Gaps = 10/307 (3%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ 67
+L++G GPAG AAIYAAR L+ ++A +GGQ+ T IEN G L
Sbjct: 215 VLVVGGGPAGAAAAIYAARKGLRTAMVA-ERIGGQVKDTVGIENLIS-VPYTTGSQLAAN 272
Query: 68 MRQQAENFGTKIIQDL-VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEK 126
+ + + + ++++ ++ + +V +SG++ A +V++ATG+ + L + EK
Sbjct: 273 LEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEK 332
Query: 127 KFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKI 186
++ G GV+ C CDG F+K KDV V+GGGN+ E A+ LA I R VT++ L+++K+
Sbjct: 333 EYIGKGVAYCPHCDGPFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADELKADKV 392
Query: 187 LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAI 246
LQ+KL N+D L + +++G + V+G+R ++ G + ++DG+F+ I
Sbjct: 393 LQDKLKSLPNVDILTSAQTTEIVGDGDK------VTGIRYQDRNSGEEKQLDLDGVFVQI 446
Query: 247 GYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAA 306
G PNT+ + +++ I + + TS+PGIFAAGDV Y+Q I A G AA
Sbjct: 447 GLVPNTEWLKDAVELNRRGEI-VIDERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAA 505
Query: 307 LEVEHYL 313
L YL
Sbjct: 506 LSAFDYL 512
Score = 28.5 bits (64), Expect = 2.3
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
DV+VVGGG A A++ A+ R +V R
Sbjct: 214 DVLVVGGGPAGAAAAIYAARKGLRTAMVAER 244
>gnl|CDD|185217 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 188 bits (479), Expect = 2e-48
Identities = 98/316 (31%), Positives = 163/316 (51%), Gaps = 17/316 (5%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLMEQ 67
+L++G GPAG AAIYAAR ++ I+A GGQ++ T IEN+ G L
Sbjct: 214 VLVVGGGPAGAAAAIYAARKGIRTGIVA-ERFGGQVLDTMGIENFISV-PETEGPKLAAA 271
Query: 68 MRQQAENFGTKIIQ-DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW--LRLES 124
+ + + + I+ ++ VE +G + A V++ATG+ +W + +
Sbjct: 272 LEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGA--RWRNMNVPG 329
Query: 125 EKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE 184
E +++ GV+ C CDG +K K V V+GGGN+ E A+ LA I + VT++ L+++
Sbjct: 330 EDEYRNKGVAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPELKAD 389
Query: 185 KILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFI 244
++LQ+KL N+ + + + +V G + V+G+ ++ G ++G+F+
Sbjct: 390 QVLQDKLRSLPNVTIITNAQTTEVTGDGDK------VTGLTYKDRTTGEEHHLELEGVFV 443
Query: 245 AIGYKPNTKIFRHQLKMTNTNYIWTMPDST-ATSIPGIFAAGDVADERYRQAITAAAMGC 303
IG PNT+ + +++ I D+ ATS+PG+FAAGD Y+Q I A G
Sbjct: 444 QIGLVPNTEWLKGTVELNRRGEIIV--DARGATSVPGVFAAGDCTTVPYKQIIIAMGEGA 501
Query: 304 MAALEVEHYLSIHQSS 319
AAL YL I S+
Sbjct: 502 KAALSAFDYL-IRNSA 516
>gnl|CDD|149204 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 277
Score = 180 bits (458), Expect = 5e-46
Identities = 81/293 (27%), Positives = 119/293 (40%), Gaps = 23/293 (7%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLME 66
++IIG GPAG AAIY AR LK +I GG I + G L
Sbjct: 1 DVVIIGGGPAGLAAAIYLARLGLKVALI--EKEGGTCYNRGCIPKKLLLEAAEVGK-LDL 57
Query: 67 QMRQQAENFGTKIIQ-DLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE 125
+ +Q ++ G +++ V ++D V G D +VIATG+ + +
Sbjct: 58 RPLEQYKDEGIEVLLGTGVTAIDKAGKK--VTLDDGKELTYDKLVIATGARPRRPPIPGV 115
Query: 126 KKFQGFGVSACATCDGFFYKNKD---VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR 182
+ GV + D + K V+VVGGG E A LAK+ VT+V RR L
Sbjct: 116 ELD---GVFYLTSDDALALREKPKKRVVVVGGGYIGLELAAALAKLGAEVTVVERRDRLL 172
Query: 183 SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI 242
+ + + L ++ L V+ + V V K D
Sbjct: 173 ARADDEIRAALLEKLEELGGVIVLLAKVEV-------VVEVVEGVVVKVVLEDGIEADAD 225
Query: 243 FIAIGYKPNTKIFRHQ---LKMTNTNYIWTMPDSTATSIPGIFAAGDVADERY 292
+AIG PN + L++ YI + TS+PGI+AAGDVA+ R
Sbjct: 226 LVAIGRGPNPNTLLLEKAGLELDERGYIVV-DEYLRTSVPGIYAAGDVAEGRP 277
>gnl|CDD|183296 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A;
Provisional.
Length = 457
Score = 83.7 bits (208), Expect = 5e-17
Identities = 92/356 (25%), Positives = 131/356 (36%), Gaps = 93/356 (26%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII--AGSDLGGQLMITESIENY--PGFATSIR-G 61
K+ +IG+GPAG TAA AR V I A GG L Y P F
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYD-VTIFEARDKAGGLLR-------YGIPEFRLPKDIV 193
Query: 62 DWLMEQMRQQAENFGTKIIQDLVV----SVD--LDRHPFLVETQSGDLWHADAVVIATG- 114
D +E++ + G +I + V ++D + DAV I TG
Sbjct: 194 DREVERLLKL----GVEIRTNTEVGRDITLDELRAGY--------------DAVFIGTGA 235
Query: 115 SEVKWLRLESEKKFQGFGVSACATCDGFFYKN------------------KDVIVVGGGN 156
++L + E G + K V+V+GGGN
Sbjct: 236 GLPRFLGIPGE------------NLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGN 283
Query: 157 TA---AEEALHLAKIARRVTIVHRRS------SLRSEKILQEK----LFLQSNIDFLFDT 203
TA A A L A VTIV+RR S + +E+ +L + ++ L D
Sbjct: 284 TAMDAARTAKRLG--AESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDE 341
Query: 204 EVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ--LKM 261
V + + P SG R EG+ F D + AIG PN I L++
Sbjct: 342 GRVTGVEFVRMELGEPDASGRRR-VPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLEL 400
Query: 262 TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQA---ITAAAMGCMAALEVEHYLS 314
I ++ TS+PG+FA GD+ A + A G AA + YL
Sbjct: 401 NRWGTIIADDETGRTSLPGVFAGGDIV----TGAATVVWAVGDGKDAAEAIHEYLE 452
>gnl|CDD|180516 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 80.2 bits (199), Expect = 7e-16
Identities = 75/340 (22%), Positives = 126/340 (37%), Gaps = 68/340 (20%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG---------------QLMITESIENY 52
+++IG+GPAGY AA AA+ K +I LGG ++
Sbjct: 6 VIVIGAGPAGYVAARRAAKLGKKVALIEKGPLGGTCLNVGCIPSKALIAAAEAFHEAKHA 65
Query: 53 PGF---ATSIRGDW--LMEQMRQQAENFGTKIIQDLVVSVDLDRHP----FLVETQ---S 100
F A + D+ +M ++R++ + F +++ L +D+ F+ +
Sbjct: 66 EEFGIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVN 125
Query: 101 GDLWHADAVVIATGSEV-----KWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIVV 152
G+ A +VIATGS V WL L S D F + K + V+
Sbjct: 126 GERIEAKNIVIATGSRVPPIPGVWLILG-----DRLLTS-----DDAFELDKLPKSLAVI 175
Query: 153 GGGNTAAEEALHLAKIARRVTIVHRRSSL--RSEKILQEKL--FLQSNIDFLFDTEVVDV 208
GGG E L+++ +VT+ R + + + ++ L +V V
Sbjct: 176 GGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKEFKIKLGAKVTSV 235
Query: 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNTN 265
S +K G D + +A G +PNT + +++
Sbjct: 236 E---------KSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERG 286
Query: 266 YIWTMPDSTATSIPGIFAAGDVADER------YRQAITAA 299
T TS+PGI+AAGDV + + AA
Sbjct: 287 RPVVDE-HTQTSVPGIYAAGDVNGKPPLLHEAADEGRIAA 325
>gnl|CDD|162312 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. The motif
GGXCXXXGCXP near the N-terminus contains a redox-active
disulfide.
Length = 461
Score = 69.2 bits (170), Expect = 1e-12
Identities = 78/351 (22%), Positives = 130/351 (37%), Gaps = 85/351 (24%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQ------------LMITESIENYPGF 55
+++IG GP GY AAI AA+ LK ++ LGG L E +
Sbjct: 4 VVVIGGGPGGYVAAIRAAQLGLKVALVEKEYLGGTCLNVGCIPTKALLHSAEVYDEIKHA 63
Query: 56 A------TSIRGDWLMEQMRQQAENFGTKIIQDLVVSVD-----------------LDRH 92
++ DW E+M+++ K+++ LV V LD
Sbjct: 64 KDYGIEVENVSVDW--EKMQKRKN----KVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPG 117
Query: 93 PFLVETQSG-DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFY---KNKD 148
LV ++G + A ++IATGS + L + F T G +
Sbjct: 118 TVLVTGENGEETLTAKNIIIATGSRPRSLPGPFD-----FDGEVVITSTGALNLKEVPES 172
Query: 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQ----------EKLFLQSNID 198
++++GGG E A A + +VT++ ++IL K + +
Sbjct: 173 LVIIGGGVIGIEFASIFASLGSKVTVIEM-----LDRILPGEDAEVSKVVAKALKKKGVK 227
Query: 199 FLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF--- 255
L +T+V V + V NK + + +A+G KPNT+
Sbjct: 228 ILTNTKVTAVEKN---------DDQVVYENKGGETETL-TGEKVLVAVGRKPNTEGLGLE 277
Query: 256 RHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV------ADERYRQAITAAA 300
+++ I + T++PGI+A GDV A + I AA
Sbjct: 278 NLGVELDERGRIVV-DEYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAAE 327
>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional.
Length = 464
Score = 68.5 bits (168), Expect = 2e-12
Identities = 96/363 (26%), Positives = 145/363 (39%), Gaps = 98/363 (26%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYPGFATSIRGDWLM 65
K+ +IGSGPAG T A A+ I A + GG L + P F + + ++
Sbjct: 142 KVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVL-----VYGIPEF--RLPKETVV 194
Query: 66 EQMRQQAENFGTKIIQDLVV--SVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLE 123
++ + + G KI ++VV +V +D L+E + DAV I +G+ +
Sbjct: 195 KKEIENIKKLGVKIETNVVVGKTVTIDE---LLEEEG-----FDAVFIGSGAGLP----- 241
Query: 124 SEKKFQGF-GVSACATCDGFFYKN-----------------------KDVIVVGGGNTAA 159
KF G G + +G F N K V VVGGGN A
Sbjct: 242 ---KFMGIPGENL----NGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM 294
Query: 160 EEALHLAKIARRVTIVHRRS----SLRSEKILQEKLFLQSNIDFLFDTEVVDVIG----- 210
+ A ++ V IV+RRS R E++ K + + F T V+++G
Sbjct: 295 DAARTALRLGAEVHIVYRRSEEELPARVEEVHHAK---EEGVIFDLLTNPVEILGDENGW 351
Query: 211 ---------SIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKM 261
+ EP SG R + EG+ F VD + +++G PN + K
Sbjct: 352 VKGMKCIKMELGEP----DASGRRRPVEIEGSEFVLEVDTVIMSLGTSPN-PLISSTTKG 406
Query: 262 TNTN---YIWTMPDSTATSIPGIFAAGDVADERYRQAITAA-----AMGC--MAALEVEH 311
N I ++ TS G+FA GD A+T A AMG AA ++
Sbjct: 407 LKINKRGCIVADEETGLTSKEGVFAGGD--------AVTGAATVILAMGAGKKAAKAIDE 458
Query: 312 YLS 314
YLS
Sbjct: 459 YLS 461
>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase. Members of this
protein family are CoA-disulfide reductase (EC
1.8.1.14), as characterized in Staphylococcus aureus,
Pyrococcus horikoshii, and Borrelia burgdorferi, and
inferred in several other species on the basis of high
levels of CoA and an absence of glutathione as a
protective thiol.
Length = 427
Score = 65.1 bits (159), Expect = 2e-11
Identities = 46/180 (25%), Positives = 76/180 (42%), Gaps = 33/180 (18%)
Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHR-----RSSLRSE--KILQEKLFLQSN 196
K ++V+++GGG E A L + + VT++HR E +I++E+L +
Sbjct: 135 NKVENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEEL-KKHE 193
Query: 197 IDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR 256
I+ + EV + G + D + +A G KPN+++ +
Sbjct: 194 INLRLNEEVDSIEGE---------ERVKVFTSGGV-----YQADMVILATGIKPNSELAK 239
Query: 257 H-QLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQ---------AITAAAMGCMAA 306
LK+ T IW + TS+P I+AAGDVA+ A A MG +A
Sbjct: 240 DSGLKLGETGAIWV-NEKFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAG 298
>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric. This
protein is homologous to the small subunit of NADPH and
NADH forms of glutamate synthase as found in eukaryotes
and some bacteria. This protein is found in numerous
species having no homolog of the glutamate synthase
large subunit. The prototype of the family, from
Pyrococcus sp. KOD1, was shown to be active as a
homotetramer and to require NADPH.
Length = 449
Score = 64.1 bits (156), Expect = 4e-11
Identities = 76/341 (22%), Positives = 121/341 (35%), Gaps = 60/341 (17%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLME 66
K+ +IG+GPAG A A+A + G ++ T I + + ++
Sbjct: 135 KVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV-TYGIPEFRLPKEIV--VTEIK 191
Query: 67 QMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLRLESE 125
+ + G + +V + DAV I TG+ + K + + E
Sbjct: 192 TL----KKLGVTFRMNFLVGKTATLEELFSQY--------DAVFIGTGAGLPKLMNIPGE 239
Query: 126 KKFQGFGVSACAT------------CDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVT 173
+ + + T D Y K V+V+GGGNTA + A ++ V
Sbjct: 240 ELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTALRLGAEVH 299
Query: 174 IVHRR----SSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGS----------IPEPPLFP 219
++RR + R E+I + + + F F + V++IG
Sbjct: 300 CLYRRTREDMTARVEEIAHAE---EEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQ 356
Query: 220 SVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDST----- 274
SG R + D + +AIG N I M T + T T
Sbjct: 357 IDSGERRFLPCGDAECKLEADAVIVAIGNGSN-PI------MAETTRLKTSERGTIVVDE 409
Query: 275 --ATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYL 313
TSIPG+FA GD+ I A G AA + YL
Sbjct: 410 DQRTSIPGVFAGGDIILGAAT-VIRAMGQGKRAAKSINEYL 449
>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated.
Length = 458
Score = 64.0 bits (156), Expect = 5e-11
Identities = 86/371 (23%), Positives = 136/371 (36%), Gaps = 116/371 (31%)
Query: 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLM---------ITESIENYP--- 53
SK+++IG GPAGY AAI AA+ +I +DLGG + + ES E +
Sbjct: 1 SKLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNEGCMPTKSLLESAEVHDKVK 60
Query: 54 --------GFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVD----------------- 88
SI DW Q R+ +I+ LV +
Sbjct: 61 KANHFGITLPNGSISIDWKQMQARKS------QIVTQLVQGIQYLMKKNKIKVIQGKASF 114
Query: 89 LDRHPFLVETQSG-DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN- 146
H VE ++ A+ +IA GSE +E F F DG + N
Sbjct: 115 ETDHRVRVEYGDKEEVVDAEQFIIAAGSE------PTELPFAPF--------DGKWIINS 160
Query: 147 ----------KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE------KILQEK 190
+++VGGG E A +++ +VTIV L IL+EK
Sbjct: 161 KHAMSLPSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREK 220
Query: 191 LFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHN-------KKEGNFFERNVDGIF 243
L + + V + F + L++ + EG+ E N + +
Sbjct: 221 L----------ENDGVKI---------FTGAALKGLNSYKKQALFEYEGSIQEVNAEFVL 261
Query: 244 IAIGYKPNTKIFRHQLKMTN-----TNYIWTMPDSTATSIPGIFAAGDV------ADERY 292
+++G KP QL + +N ++ + T++P I+A GDV A +
Sbjct: 262 VSVGRKPRV----QQLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDVIGGIQLAHVAF 317
Query: 293 RQAITAAAMGC 303
+ TAA
Sbjct: 318 HEGTTAALHAS 328
>gnl|CDD|183739 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta;
Provisional.
Length = 752
Score = 63.6 bits (155), Expect = 7e-11
Identities = 60/194 (30%), Positives = 85/194 (43%), Gaps = 40/194 (20%)
Query: 147 KDVIVVGGGNTA---AEEALHLAKIARRVTIVHRRSS----LRSEKILQEKLFLQSNIDF 199
K V VVGGGNTA A A L A RVTIV+RRS R E++ K + I+F
Sbjct: 571 KKVAVVGGGNTAMDSARTAKRLG--AERVTIVYRRSEEEMPARLEEVKHAK---EEGIEF 625
Query: 200 LFDTEVVDVIGS--------------IPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIA 245
L ++ + + E P SG R G+ F +VD + ++
Sbjct: 626 LTLHNPIEYLADEKGWVKQVVLQKMELGE----PDASGRRRPVAIPGSTFTVDVDLVIVS 681
Query: 246 IGYKPNTKIFR--HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAA-AMG 302
+G PN + L++ I + + +SIPGI+A GD+ R T AMG
Sbjct: 682 VGVSPNPLVPSSIPGLELNRKGTI-VVDEEMQSSIPGIYAGGDIV----RGGATVILAMG 736
Query: 303 C--MAALEVEHYLS 314
AA ++ YLS
Sbjct: 737 DGKRAAAAIDEYLS 750
Score = 27.4 bits (61), Expect = 4.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 7 KILIIGSGPAGYTAA 21
K+ +IGSGPAG + A
Sbjct: 433 KVAVIGSGPAGLSFA 447
>gnl|CDD|183763 PRK12810, gltD, glutamate synthase subunit beta; Reviewed.
Length = 471
Score = 63.3 bits (155), Expect = 8e-11
Identities = 79/355 (22%), Positives = 136/355 (38%), Gaps = 83/355 (23%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENY--PGFATSIRGDW 63
K+ ++GSGPAG AA ARA K + +D +GG L Y P F
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR-------YGIPDFKL---EKE 194
Query: 64 LMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLRL 122
++++ + E G + ++ V D+ L E DAV + TG+ + L +
Sbjct: 195 VIDRRIELMEAEGIEFRTNVEVGKDITAEELLAEY--------DAVFLGTGAYKPRDLGI 246
Query: 123 ESE----------------KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAE---EAL 163
++ G + G K V+V+GGG+T + A+
Sbjct: 247 PGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKG-----KHVVVIGGGDTGMDCVGTAI 301
Query: 164 HLAKIARRVT---IVHRRSSLRSEKI---LQEKLFLQSN-----IDFLFDTEVVDVIGSI 212
A+ VT I+ S R++ SN ++ F+ + + G
Sbjct: 302 RQG--AKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEGEN 359
Query: 213 PEPPLFPSVSGVRLH--NKKEGNF-------FERNVDGIFIAIGYK-PNTKIFR-HQLKM 261
+ V+GV++ EG+F F D + +A+G+ P + +++
Sbjct: 360 GK------VTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVEL 413
Query: 262 TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQA---ITAAAMGCMAALEVEHYL 313
+ ++ TS P +FAAGD+ R + A A G AA ++ YL
Sbjct: 414 DERGRVAAPDNAYQTSNPKVFAAGDM----RRGQSLVVWAIAEGRQAARAIDAYL 464
>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase
subunit beta/2-polyprenylphenol hydroxylase;
Provisional.
Length = 944
Score = 59.5 bits (144), Expect = 1e-09
Identities = 58/184 (31%), Positives = 83/184 (45%), Gaps = 26/184 (14%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS----LRSEKI---LQEKL---FLQ 194
K K+V V+GGGNTA + A ++ VTIV+RR+ R E++ L+E + L+
Sbjct: 446 KGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLAVLR 505
Query: 195 SNIDFLFDTE-------VVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIG 247
+ +F+ D ++DV + E P SG R K G VD + +A+G
Sbjct: 506 APREFIGDDHTHFVTHALLDVN-ELGE----PDKSG-RRSPKPTGEIERVPVDLVIMALG 559
Query: 248 YKPN--TKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
N K LK I S TSI G+++ GD A AI AA G A
Sbjct: 560 NTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIRAAGDGQAA 618
Query: 306 ALEV 309
A E+
Sbjct: 619 AKEI 622
>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase
small subunit; Provisional.
Length = 652
Score = 57.8 bits (140), Expect = 3e-09
Identities = 88/342 (25%), Positives = 136/342 (39%), Gaps = 71/342 (20%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY--PGF---ATSIRG 61
K+ IIG+GPAG TAA Y R I ++ G +M Y P F + I
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMM------RYGIPRFRLPESVIDA 248
Query: 62 DWLMEQMRQQAENF--GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW 119
D + +R F T +D ++++ + F DAV++A G++ K
Sbjct: 249 D--IAPLRAMGAEFRFNTVFGRD--ITLEELQKEF------------DAVLLAVGAQ-KA 291
Query: 120 LRL-----ESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNT---AAEEALHLAKIARR 171
++ E G + K V+V+GGGNT AA AL L A
Sbjct: 292 SKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGGNTAIDAARTALRLG--AES 349
Query: 172 VTIVHRRS-----SLRSE-----------KILQEKLFLQSNIDFLFDTEVVDVIGSIPEP 215
VTI++RR+ + R+E + L + ++ + L T + G
Sbjct: 350 VTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQQGE---- 405
Query: 216 PLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ-LKMTNTNYIWTMPDST 274
P SG R EG+ F D + AIG + + I + + + P++
Sbjct: 406 ---PDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETL 462
Query: 275 ATSIPGIFAAGDV---ADERYRQAITAAAMGCMAALEVEHYL 313
TS+ G+FA GD AD AI A G AA ++ +L
Sbjct: 463 QTSVAGVFAGGDCVTGAD----IAINAVEQGKRAAHAIDLFL 500
>gnl|CDD|162675 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH.
Length = 463
Score = 57.4 bits (139), Expect = 5e-09
Identities = 81/341 (23%), Positives = 133/341 (39%), Gaps = 60/341 (17%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQL---------MITESIENYPGFATS 58
++IIGSG A + AAI AA ++ LGG M+ + E
Sbjct: 3 LVIIGSGAAAFAAAIKAAELGASVAMVERGPLGGTCVNVGCVPSKMLLRAAEVAHYARKP 62
Query: 59 IRG----------DWLMEQMRQQAENFGTKIIQDLVVSVDLD--------RHPFLVETQS 100
G L+E R+ E + +D++ S +D + P V+
Sbjct: 63 PFGGLAATVAVDFGELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDL 122
Query: 101 G-DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIVVGGGN 156
G ++ A +IATG+ + G + T + + + + V+GGG
Sbjct: 123 GREVRGAKRFLIATGAR------PAIPPIPGLKEAGYLTSEEALALDRIPESLAVIGGGA 176
Query: 157 TAAEEALHLAKIARRVTIVHRRSSL--RSEKILQ---EKLFLQSNIDFLFDTEVVDVIGS 211
E A A++ VTI+ R L R E + E+ + I+ + +V V
Sbjct: 177 IGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSAQVKAV--- 233
Query: 212 IPEPPLFPSVSG--VRLHNKKEGNFFERNVDGIFIAIGYKPNTK---IFRHQLKMTNTNY 266
SV G + +K G E D + +A G +PNT + + +K+
Sbjct: 234 --------SVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGG 285
Query: 267 IWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAAL 307
I + ++ TS PGI+AAGDV + + AA G +AA
Sbjct: 286 I-LVDETLRTSNPGIYAAGDVTGGLQLEYV-AAKEGVVAAE 324
Score = 26.6 bits (59), Expect = 8.4
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
D++++G G A A+ A++ V +V R
Sbjct: 2 DLVIIGSGAAAFAAAIKAAELGASVAMVER 31
>gnl|CDD|182113 PRK09853, PRK09853, putative selenate reductase subunit YgfK;
Provisional.
Length = 1019
Score = 54.6 bits (132), Expect = 3e-08
Identities = 76/308 (24%), Positives = 122/308 (39%), Gaps = 55/308 (17%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGF---ATSIR 60
K+ +IG+GPAG AA + ARA + + GG ++ I P F A I+
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGG--VVKNII---PQFRIPAELIQ 593
Query: 61 GDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KW 119
D +E ++ F DL V L + D VV+A G++
Sbjct: 594 HD--IEFVKAHGVKFEFGCSPDLTVE-QLKNEGY------------DYVVVAIGADKNGG 638
Query: 120 LRLESEKKFQ----GFGVSACATCDGFFYKNKDVIVVGGGNTA---AEEALHLAKIARRV 172
L+LE + F K V+VVGGGNTA A AL + + +V
Sbjct: 639 LKLEGGNQNVIKALPFLEEYKNK-GTALKLGKHVVVVGGGNTAMDAARAALRVPGV-EKV 696
Query: 173 TIVHRRS-----SLRSEKILQEKL-------FLQSNIDFLFDTEVVDVIGSIPEPPLFPS 220
T+V+RR+ + R E +E L L + F D + + + EP
Sbjct: 697 TVVYRRTKQEMPAWREE--YEEALEDGVEFKELLNPESFDADGTLTCRVMKLGEP----D 750
Query: 221 VSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF-RHQLKMTNTNYIWTMPDSTATSIP 279
SG R + G D + AIG + +T++ + + + + + + TS+
Sbjct: 751 ESG-RRRPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWP-VVDANGETSLT 808
Query: 280 GIFAAGDV 287
++ GDV
Sbjct: 809 NVYMIGDV 816
>gnl|CDD|183735 PRK12771, PRK12771, putative glutamate synthase (NADPH) small
subunit; Provisional.
Length = 564
Score = 54.1 bits (131), Expect = 5e-08
Identities = 80/337 (23%), Positives = 129/337 (38%), Gaps = 60/337 (17%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII--AGSDLGGQLMITESIENY--PGFATSIRGD 62
++ +IG GPAG +AA + R M V I AG LGG + Y P + +
Sbjct: 139 RVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGPKLGGMMR-------YGIPAYRLPR--E 188
Query: 63 WLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLR 121
L ++ Q+ + G ++ + V D+ +E G+ DAV +A G+++ K L
Sbjct: 189 VLDAEI-QRILDLGVEVRLGVRVGEDI-----TLEQLEGEF---DAVFVAIGAQLGKRLP 239
Query: 122 LESEKKFQGFGVSACATCDGFFYKNKD-----VIVVGGGNTAAEEALHLAKIARR----- 171
+ E + A V+V+GGGNT A+ A+ ARR
Sbjct: 240 IPGEDA--AGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNT----AMDAARTARRLGAEE 293
Query: 172 VTIVHRRSSLRSEKI----------LQEK---LFLQSNIDFLFDTEVVDVIGSIPEPPLF 218
VTIV+RR E + L+E +L++ ++ D + I
Sbjct: 294 VTIVYRR---TREDMPAHDEEIEEALREGVEINWLRTPVEIEGDENGATGLRVIT-VEKM 349
Query: 219 PSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNY-IWTMPDSTATS 277
R G D + +AIG ++ + + P+ T
Sbjct: 350 ELDEDGRPSP-VTGEEETLEADLVVLAIGQDIDSAGLESVPGVEVGRGVVQVDPNFMMTG 408
Query: 278 IPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314
PG+FA GD+ R TA G AA ++ +L
Sbjct: 409 RPGVFAGGDMVPGP-RTVTTAIGHGKKAARNIDAFLG 444
>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit.
Members of this protein family are YgfK, predicted to be
one subunit of a three-subunit, molybdopterin-containing
selenate reductase. This enzyme is found, typically, in
genomic regions associated with xanthine dehydrogenase
homologs predicted to belong to the selenium-dependent
molybdenum hydroxylases (SDMH). Therefore, the selenate
reductase is suggested to play a role in furnishing
selenide for SelD, the selenophosphate synthase.
Length = 1012
Score = 52.5 bits (126), Expect = 1e-07
Identities = 74/312 (23%), Positives = 124/312 (39%), Gaps = 67/312 (21%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII--AGSDLGGQLMITESIENYPGFATSIRGDWL 64
K+ +IG+GPAG +A + ARA PV + GG ++ I + A SI+ D
Sbjct: 539 KVAVIGAGPAGLSAGYFLARAGH-PVTVFEKKEKPGG--VVKNIIPEFRISAESIQKD-- 593
Query: 65 MEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKW----L 120
+E ++ F DL V+ +L + V++A G+ W L
Sbjct: 594 IELVKFHGVEFKYGCSPDLTVA-ELKNQGY------------KYVILAIGA---WKHGPL 637
Query: 121 RLES--EKKFQGFGVSACATCDGFFYKNKD----------VIVVGGGNTA---AEEALHL 165
RLE E+ + F K+ V+VVGGGNTA A AL +
Sbjct: 638 RLEGGGERVLKSLE---------FLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRV 688
Query: 166 AKIARRVTIVHRRSSLRSEKILQE-KLFLQSNIDFLF--------DTEVVDVIGSIPEPP 216
+ +VT+V+RR+ +E + L+ +DF D + + + E
Sbjct: 689 PGV-EKVTVVYRRTKRYMPASREELEEALEDGVDFKELLSPESFEDGTLTCEVMKLGE-- 745
Query: 217 LFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF-RHQLKMTNTNYIWTMPDSTA 275
P SG R G + D + A+G + +T + ++ + + + +
Sbjct: 746 --PDASG-RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGE 802
Query: 276 TSIPGIFAAGDV 287
T+I +F GD
Sbjct: 803 TNITNVFVIGDA 814
>gnl|CDD|180546 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 52.5 bits (127), Expect = 1e-07
Identities = 66/333 (19%), Positives = 115/333 (34%), Gaps = 87/333 (26%)
Query: 10 IIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG----------QLMITESIE-------NY 52
+IG+G AG A AA +K +I LGG + +I +
Sbjct: 10 VIGAGQAGPPLAARAAGLGMKVALIERGLLGGTCVNTGCVPTKTLIASARAAHLARRAAE 69
Query: 53 PGFATS--IRGDW--LMEQMRQ---QAENFGTKIIQDLVVSVDL--------DRHPFLVE 97
G + + D+ +M + R+ ++ + + ++ L VD+ + V
Sbjct: 70 YGVSVGGPVSVDFKAVMARKRRIRARSRHGSEQWLRGL-EGVDVFRGHARFESPNTVRV- 127
Query: 98 TQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVI------- 150
G+ A + I TG+ + G+ + N+ +
Sbjct: 128 --GGETLRAKRIFINTGARAAIPPIP--------GLDEVG-----YLTNETIFSLDELPE 172
Query: 151 ---VVGGGNTAAEEALHLAKIARR----VTIVHRRSSLRSE------KILQEKLFLQSNI 197
++GGG E A++ RR VT++ R L ++E L + I
Sbjct: 173 HLVIIGGGYIGLE----FAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREIL-EREGI 227
Query: 198 DFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF-- 255
D + E + V G+ + G E I +A+G PNT
Sbjct: 228 DVRLNAECIRVE---------RDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTDDLGL 278
Query: 256 -RHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
++ YI + D T+ PGI+AAGD
Sbjct: 279 EAAGVETDARGYI-KVDDQLRTTNPGIYAAGDC 310
>gnl|CDD|183734 PRK12770, PRK12770, putative glutamate synthase subunit beta;
Provisional.
Length = 352
Score = 51.9 bits (125), Expect = 2e-07
Identities = 83/355 (23%), Positives = 121/355 (34%), Gaps = 124/355 (34%)
Query: 7 KILIIGSGPAGYTAAIYAA---------RAMLKPVIIAGSDLGGQLMITESIENYPGF-- 55
K+ IIG+GPAG AA Y A + +P GG ++ P F
Sbjct: 20 KVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEP--------GGLMLFG-----IPEFRI 66
Query: 56 -ATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLW---------- 104
+R ++++ + F T+ + L GD +
Sbjct: 67 PIERVREG--VKELEEAGVVFHTRT--KVCCGEPLHEE-------EGDEFVERIVSLEEL 115
Query: 105 --HADAVVIATGS-EVKWLRLESEKKFQGFGVSACATCDGFFY----------------- 144
DAV+IATG+ + + L + E GV Y
Sbjct: 116 VKKYDAVLIATGTWKSRKLGIPGE---DLPGV-----YSALEYLFRIRAAKLGYLPWEKV 167
Query: 145 ---KNKDVIVVGGGNTA---AEEALHLAKIARRVTIVHRRSSLRSE----KILQEKLFLQ 194
+ K V+VVG G TA A EA+ L A +V + +RR+ +E K E+L +
Sbjct: 168 PPVEGKKVVVVGAGLTAVDAALEAVLLG--AEKVYLAYRRT--INEAPAGKYEIERL-IA 222
Query: 195 SNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKK---------------EGNFFERNV 239
++FL V +IG V GV L + G+ F
Sbjct: 223 RGVEFLELVTPVRIIGE-------GRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEA 275
Query: 240 DGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTA-------TSIPGIFAAGDV 287
D + AIG P T F + I TS G+FAAGDV
Sbjct: 276 DTVVFAIGEIP-TPPFAKE-----CLGIELNRKGEIVVDEKHMTSREGVFAAGDV 324
>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed.
Length = 444
Score = 51.6 bits (124), Expect = 3e-07
Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 45/163 (27%)
Query: 145 KNKDVIVVGGGNT---AAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLF 201
+ K+++++G G A E A HL K V I+ ++IL + F
Sbjct: 148 EIKNIVIIGAGFIGLEAVEAAKHLGK---NVRIIQL-----EDRILPDS----------F 189
Query: 202 DTEVVDVI-GSIPEPPLFPSVSGVRLH-----------NKKEG---NFFERNVDGIFIAI 246
D E+ DV+ + E +GV LH +K EG + E D + +A
Sbjct: 190 DKEITDVMEEELRE-------NGVELHLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVAT 242
Query: 247 GYKPNTKIFRHQ-LKMTNTNYIWTMPDSTATSIPGIFAAGDVA 288
G KPNT+ LK I + + TSI I+AAGD A
Sbjct: 243 GVKPNTEFLEDTGLKTLKNGAI-IVDEYGETSIENIYAAGDCA 284
>gnl|CDD|180410 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 50.9 bits (123), Expect = 5e-07
Identities = 81/330 (24%), Positives = 118/330 (35%), Gaps = 80/330 (24%)
Query: 9 LIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG----------QLM-----ITESIENYP 53
++IG G G +A AA K +I LGG +LM I E+ +Y
Sbjct: 8 IVIGGGSGGIASANRAAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAFHDYA 67
Query: 54 ---GFATSIRG-DWLMEQMRQ--QAE-------------NFGTKIIQDLVVSVDLDRHPF 94
GF + DW ++ A N G +I+ VD
Sbjct: 68 PGYGFDVTENKFDW--AKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVD----AH 121
Query: 95 LVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIV 151
VE +G+ + AD ++IATG + G T DGFF K V V
Sbjct: 122 TVEV-NGERYTADHILIATGGRPSIPDIP--------GAEYGITSDGFFALEELPKRVAV 172
Query: 152 VGGGNTAAEEALHLAKIARRVTIVHRRSS-LRS-EKILQEKL---FLQSNIDFLFDTEVV 206
VG G A E A L + + R + LR + ++E L + I +
Sbjct: 173 VGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLHTNAVPK 232
Query: 207 DVI----GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---RHQL 259
V GS+ + L + + VD + AIG +PNT +
Sbjct: 233 AVEKNADGSLT----------LTLEDGET-----LTVDCLIWAIGREPNTDGLGLENAGV 277
Query: 260 KMTNTNYIWTMPDSTATSIPGIFAAGDVAD 289
K+ YI T++PGI+A GDV
Sbjct: 278 KLNEKGYIIVDEYQN-TNVPGIYAVGDVTG 306
>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol
hydroxylase/glutamate synthase subunit beta/ferritin
domain-containing protein; Provisional.
Length = 1006
Score = 50.7 bits (121), Expect = 5e-07
Identities = 85/355 (23%), Positives = 136/355 (38%), Gaps = 70/355 (19%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYPGFATSIRGDWLM 65
K+ I GSGPAG AA + + + A +GG L P F ++
Sbjct: 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY-----GIPSFRLPRD---II 483
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLRLES 124
++ Q+ + G KI + V+ F V D DAV + G+ +L +
Sbjct: 484 DREVQRLVDIGVKIETNKVIG-----KTFTVPQLMNDKGF-DAVFLGVGAGAPTFLGIPG 537
Query: 125 EKKFQGFGVSACAT------CDGFFYKN------KDVIVVGGGNTAAEEALHLAKIARR- 171
E Q + + T D F + + K V+V+G GNTA + ++A+R
Sbjct: 538 EFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTA----MDCLRVAKRL 593
Query: 172 ----VTIVHRRSSL----RSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSG 223
V V+RRS R E+I K + IDF F V++ SV G
Sbjct: 594 GAPTVRCVYRRSEAEAPARIEEIRHAK---EEGIDFFFLHSPVEIYVDAEG-----SVRG 645
Query: 224 VRLHNKKEGN--------------FFERNVDGIFIAIGYKPNTKIFRHQ--LKMTNTNYI 267
+++ + G F + D + A+G K N I + L + I
Sbjct: 646 MKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNI 705
Query: 268 ----WTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLSIHQS 318
+ + +T++PG+FA GD+ I A G AA + YL + +
Sbjct: 706 AADDGKLESTQSTNLPGVFAGGDIVTGG-ATVILAMGAGRRAARSIATYLRLGKK 759
>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional.
Length = 438
Score = 50.6 bits (121), Expect = 5e-07
Identities = 44/199 (22%), Positives = 80/199 (40%), Gaps = 29/199 (14%)
Query: 105 HADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN--KDVIVVGGGNTAAEEA 162
D ++++ G+ L ES+ F + D F N +VVG G + E
Sbjct: 105 SYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKALVVGAGYISLEVL 164
Query: 163 LHLAKIARRVTIVHRRSSLR-------SEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEP 215
+L + T++HR + ++ IL E + I + + E+ + G+
Sbjct: 165 ENLYERGLHPTLIHRSDKINKLMDADMNQPILDE--LDKREIPYRLNEEIDAINGNE--- 219
Query: 216 PLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK-IFRHQLKMTNTNYIWTMPDST 274
V + K ++ D I +G PN+K I +K+ + +I + D
Sbjct: 220 --------VTFKSGKVEHY-----DMIIEGVGTHPNSKFIESSNIKLDDKGFI-PVNDKF 265
Query: 275 ATSIPGIFAAGDVADERYR 293
T++P I+A GD+ YR
Sbjct: 266 ETNVPNIYAIGDIITSHYR 284
>gnl|CDD|163170 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide
oxidoreductase family protein. Members of this protein
family include N-terminal sequence regions of (probable)
bifunctional proteins whose C-terminal sequences are
SelD, or selenide,water dikinase, the selenium donor
protein necessary for selenium incorporation into
protein (as selenocysteine), tRNA (as 2-selenouridine),
or both. However, some members of this family occur in
species that do not show selenium incorporation, and the
function of this protein family is unknown.
Length = 364
Score = 50.4 bits (121), Expect = 6e-07
Identities = 43/244 (17%), Positives = 75/244 (30%), Gaps = 47/244 (19%)
Query: 69 RQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESE--- 125
R+ A G + + +D DR V + D + + GS +E
Sbjct: 61 RRLARQAGARFVIAEATGIDPDRR--KVLLANRPPLSYDVLSLDVGSTTPLSGVEGAADL 118
Query: 126 -----------KKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTI 174
+++ SA A K + VVGGG E AL L + + +
Sbjct: 119 AVPVKPIENFLARWEALLESADAPPG-----TKRLAVVGGGAAGVEIALALRRRLPKRGL 173
Query: 175 VHRRSSLRSEKILQE----------KLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGV 224
+ + + +L +L + I+ V +
Sbjct: 174 RGQVTLIAGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRG-----------PDGAL 222
Query: 225 RLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAA 284
L + + D I A G + + L + ++ P + S P +FAA
Sbjct: 223 ILADGRTLPA-----DAILWATGARAPPWLAESGLPLDEDGFLRVDPTLQSLSHPHVFAA 277
Query: 285 GDVA 288
GD A
Sbjct: 278 GDCA 281
Score = 31.9 bits (73), Expect = 0.26
Identities = 24/116 (20%), Positives = 46/116 (39%), Gaps = 15/116 (12%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLME 66
++ ++G G AG A+ R + L GQ+ + PGF +R ++
Sbjct: 147 RLAVVGGGAAGVEIALALRRRL------PKRGLRGQVTLIAGASLLPGFPAKVR-RLVLR 199
Query: 67 QMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEV-KWLR 121
+ ++ G ++ + V+ + G ADA++ ATG+ WL
Sbjct: 200 LLARR----GIEVHEGAPVT---RGPDGALILADGRTLPADAILWATGARAPPWLA 248
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 48.4 bits (116), Expect = 3e-06
Identities = 75/314 (23%), Positives = 122/314 (38%), Gaps = 76/314 (24%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENY--PG----FATSIRG 61
I+IIGSG +AAR ++K + + + L+ +S + Y P F+ R
Sbjct: 5 IVIIGSG--------FAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVFSQGQRA 56
Query: 62 DWLMEQMRQQAENFG-----TKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSE 116
D L RQ A F V +D + + W D +V+ATG+
Sbjct: 57 DDLT---RQSAGEFAEQFNLRLFPHTWVTDIDAEAQVVKSQGNQ---WQYDKLVLATGAS 110
Query: 117 V--------KW-LRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAK 167
+ L L S+++++ + + V+VVGGG E A+ L +
Sbjct: 111 AFVPPIPGRELMLTLNSQQEYR--------AAETQLRDAQRVLVVGGGLIGTELAMDLCR 162
Query: 168 IARRVTIVHRRSSLRSEKI-------LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS 220
+ VT+V +SL + + LQ +L + + L +++ L +
Sbjct: 163 AGKAVTLVDNAASLLASLMPPEVSSRLQHRL-TEMGVHLLLKSQLQG---------LEKT 212
Query: 221 VSGVR--LHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTN----TNYIWTMPDST 274
SG+R L + G E VD + A G +PNT + R N +
Sbjct: 213 DSGIRATLDS---GRSIE--VDAVIAAAGLRPNTALARRAGLAVNRGIVVD------SYL 261
Query: 275 ATSIPGIFAAGDVA 288
TS P I+A GD A
Sbjct: 262 QTSAPDIYALGDCA 275
>gnl|CDD|179973 PRK05249, PRK05249, soluble pyridine nucleotide transhydrogenase;
Provisional.
Length = 461
Score = 48.2 bits (116), Expect = 3e-06
Identities = 79/358 (22%), Positives = 128/358 (35%), Gaps = 118/358 (32%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQ----------------L 43
M +D +++IGSGPAG AA+ AA+ + +I ++GG L
Sbjct: 1 MHMYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIERYRNVGGGCTHTGTIPSKALREAVL 60
Query: 44 MITESIENYPGFATSIR--GDWLMEQMRQQAE---NFGTKIIQDLVV--SVD-------- 88
+ +N +S R + +A+ N ++ + VD
Sbjct: 61 RLIGFNQN--PLYSSYRVKLRITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARF 118
Query: 89 LDRHPFLVETQSG--DLWHADAVVIATGS------EV-----------KWLRLESEKKFQ 129
+D H VE G + AD +VIATGS +V L L+
Sbjct: 119 VDPHTVEVECPDGEVETLTADKIVIATGSRPYRPPDVDFDHPRIYDSDSILSLD------ 172
Query: 130 GFGVSACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRS--EKIL 187
+ + +I+ G G E A A + +VT+++ R L S + +
Sbjct: 173 --------------HLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEI 218
Query: 188 QEKL---FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLH---------------NK 229
+ L S + + EV V G GV +H N
Sbjct: 219 SDALSYHLRDSGVTIRHNEEVEKVEG---------GDDGVIVHLKSGKKIKADCLLYANG 269
Query: 230 KEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDV 287
+ GN N++ G + ++ R QLK+ N NY T++P I+A GDV
Sbjct: 270 RTGNTDGLNLE----NAGLEADS---RGQLKV-NENY--------QTAVPHIYAVGDV 311
>gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small
subunit. This model represents one of three built for
the NADPH-dependent or NADH-dependent glutamate synthase
(EC 1.4.1.13 and 1.4.1.14, respectively) small subunit
or homologous region. TIGR01316 describes a family in
several archaeal and deeply branched bacterial lineages
of a homotetrameric form for which there is no large
subunit. Another model describes glutamate synthase
small subunit from gamma and some alpha subdivision
Proteobacteria plus paralogs of unknown function. This
model describes the small subunit, or homologous region
of longer forms proteins, of eukaryotes, Gram-positive
bacteria, cyanobacteria, and some other lineages. All
members with known function participate in NADH or
NADPH-dependent reactions to interconvert between
glutamine plus 2-oxoglutarate and two molecules of
glutamate.
Length = 485
Score = 47.9 bits (114), Expect = 4e-06
Identities = 86/359 (23%), Positives = 131/359 (36%), Gaps = 77/359 (21%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLM 65
K+ ++GSGPAG AA RA + D GG LM I N + D +
Sbjct: 145 KVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMY--GIPNMKLDKAIV--DRRI 200
Query: 66 EQMRQQAENF--GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRL- 122
+ + + +F T+I D +S D + F DAVV+A G+ K L
Sbjct: 201 DLLSAEGIDFVTNTEIGVD--ISADELKEQF------------DAVVLAGGAT-KPRDLP 245
Query: 123 ----ESEKKFQGFGVSACAT--------CDGFFY--KNKDVIVVGGGNTAAE----EALH 164
E + AT D F K K V+V+GGG+T A+ H
Sbjct: 246 IPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADCVGTSLRH 305
Query: 165 LAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS---- 220
A + I+ + R++ + +D+ + E G P +
Sbjct: 306 GAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHE-EAAAHYGRDPREYSILTKEFI 364
Query: 221 ------VSGVRLHN--------------KKEGNFFERNVDGIFIAIGY----KPNTKIFR 256
V+ +R + G+ D + +A+G+ + F
Sbjct: 365 GDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDF- 423
Query: 257 HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAIT--AAAMGCMAALEVEHYL 313
+K T I D +TSIPG+FAAGD R Q++ A G AA V+ YL
Sbjct: 424 -GVKKTRRGNISAGYDDYSTSIPGVFAAGDC---RRGQSLIVWAINEGRKAAAAVDRYL 478
>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large
subunit.
Length = 785
Score = 45.2 bits (107), Expect = 2e-05
Identities = 59/250 (23%), Positives = 101/250 (40%), Gaps = 32/250 (12%)
Query: 76 GTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSA 135
G +IQ +D V T +G D +++ATGS L + K +
Sbjct: 74 GETVIQ-------IDTDQKQVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRT 126
Query: 136 CATCDGFF---YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKI------ 186
D + K V+GGG E A+ L + V+++H L ++++
Sbjct: 127 IEDLDAIMAMAQRFKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGR 186
Query: 187 -LQEKLFLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIA 245
LQ +L Q + FL + + V+++G+ +R K+G+ E D I +A
Sbjct: 187 LLQREL-EQKGLTFLLEKDTVEIVGA-------TKADRIRF---KDGSSLE--ADLIVMA 233
Query: 246 IGYKPNTKIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMA 305
G +PN ++ N I + DS TS P I+A G+ A+ R A + A
Sbjct: 234 AGIRPNDELAVSAGIKVNRGII--VNDSMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQA 291
Query: 306 ALEVEHYLSI 315
+ +H +
Sbjct: 292 KVLADHICGV 301
>gnl|CDD|162359 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some sequence
reports interpreted as a stop codon). In some members of
this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 44.1 bits (104), Expect = 4e-05
Identities = 70/338 (20%), Positives = 119/338 (35%), Gaps = 65/338 (19%)
Query: 4 HDSKILIIGSGPAGYT----AAIYAARAML----KPVIIAGS-DLGG----------QLM 44
+D +++IG G G AA Y A+ ML P + +GG +LM
Sbjct: 1 YDYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLM 60
Query: 45 --------ITESIENYP-GFATSIRGDW--LME--QMRQQAENFGTKI---------IQD 82
+ NY +++ DW L E Q + N+G ++
Sbjct: 61 HQAALLGQALKDSRNYGWNVEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENA 120
Query: 83 LVVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGF 142
VD R + ++ A+ +IATG ++ + K+ C T D
Sbjct: 121 YAEFVDKHRIKATNKKGKEKIYSAERFLIATGERPRYPGIPGAKEL-------CITSDDL 173
Query: 143 FYKNKD---VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDF 199
F +VVG A E A LA I VT++ R LR F Q +
Sbjct: 174 FSLPYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRG--------FDQDCANK 225
Query: 200 L---FDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFR 256
+ + V + + V++ N E D + +AIG T+
Sbjct: 226 VGEHMEEHGVKFKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRKLN 285
Query: 257 HQ---LKMTNTNYIWTMPDSTATSIPGIFAAGDVADER 291
+ +K+ + T++P I+A GD+ +++
Sbjct: 286 LENVGVKINKKTGKIPADEEEQTNVPYIYAVGDILEDK 323
>gnl|CDD|181141 PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.
Length = 466
Score = 43.7 bits (104), Expect = 7e-05
Identities = 83/357 (23%), Positives = 132/357 (36%), Gaps = 116/357 (32%)
Query: 6 SKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
++I+IIG GP GY AA+ AA+ +I LGG ++T+ + + T I +
Sbjct: 2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERDGLGGAAVLTDCVPS----KTLIATAEVR 57
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLD----RHPFLVETQSGDL------------------ 103
++R +A G + I D VDL R L QS D+
Sbjct: 58 TELR-RAAELGIRFIDDGEARVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRL 116
Query: 104 ---------------------WHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDG- 141
AD V+IATG+ + L A DG
Sbjct: 117 IDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRIL--------------PTAEPDGE 162
Query: 142 ------FFYKNKDV----IVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKL 191
Y ++ IVVG G T AE A ++ +VT+V R +++L +
Sbjct: 163 RILTWRQLYDLDELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSR-----DRVLPGE- 216
Query: 192 FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGI--------- 242
D + +V+ + F G+ + + ER DG+
Sbjct: 217 ----------DADAAEVLEEV-----FAR-RGMTVLKRSRAESVERTGDGVVVTLTDGRT 260
Query: 243 ------FIAIGYKPNTK---IFRHQLKMTNTNYIWTMPDSTA-TSIPGIFAAGDVAD 289
+A+G PNT + +++T + +I D + TS+PGI+AAGD
Sbjct: 261 VEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITV--DRVSRTSVPGIYAAGDCTG 315
>gnl|CDD|180558 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 43.2 bits (103), Expect = 9e-05
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+++IG+GP GY AAI AA+ LK I+ LGG
Sbjct: 7 VIVIGAGPGGYVAAIRAAQLGLKVAIVEKEKLGG 40
Score = 30.5 bits (70), Expect = 0.60
Identities = 33/158 (20%), Positives = 57/158 (36%), Gaps = 35/158 (22%)
Query: 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSL------RSEKILQEKLFLQSNIDFL 200
K ++V+GGG E A A + VTIV + K+ E+ + I
Sbjct: 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLA-ERALKKRGIKIK 231
Query: 201 FDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNT-------- 252
+ V + GV + + G D + +A+G +PNT
Sbjct: 232 TGAKAKKVE---------QTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEEL 282
Query: 253 --KIFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVA 288
K R ++ + + T++P I+A GD+
Sbjct: 283 GVKTDRGFIE---VD------EQLRTNVPNIYAIGDIV 311
Score = 27.0 bits (61), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR 178
DVIV+G G A+ A++ +V IV +
Sbjct: 6 DVIVIGAGPGGYVAAIRAAQLGLKVAIVEKE 36
>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional.
Length = 561
Score = 41.3 bits (97), Expect = 3e-04
Identities = 43/172 (25%), Positives = 65/172 (37%), Gaps = 36/172 (20%)
Query: 150 IVVGGGNTAAEEALHLAKIARRVTIVHRRSSL-RSEKILQEKL---FLQSNIDFLFDTEV 205
V+G A E A A++ +VTI+ R + R + + E + F I+ L T+
Sbjct: 274 AVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQA 333
Query: 206 VDVIGSIPEPPLFPSVSGVRLHNKK---EGNFFERNVDGIFIAIGYKPNTKIFRHQLKM- 261
S V + + E D + +A G PNT L +
Sbjct: 334 ----------------SQVAHVDGEFVLTTGHGELRADKLLVATGRAPNT----RSLALD 373
Query: 262 -----TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAI-TAAAMGCMAAL 307
N + TS+P I+AAGD D+ Q + AAA G AA+
Sbjct: 374 AAGVTVNAQGAIVIDQGMRTSVPHIYAAGDCTDQ--PQFVYVAAAAGTRAAI 423
Score = 28.2 bits (63), Expect = 2.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+ +IGSG A AA+ A + +I +GG
Sbjct: 101 VAVIGSGGAAMAAALKAVEQGARVTLIERGTIGG 134
>gnl|CDD|180333 PRK05976, PRK05976, dihydrolipoamide dehydrogenase; Validated.
Length = 472
Score = 41.0 bits (97), Expect = 4e-04
Identities = 16/35 (45%), Positives = 21/35 (60%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
++IIG GP GY AAI A + LK ++ LGG
Sbjct: 6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKGKLGG 40
Score = 37.6 bits (88), Expect = 0.005
Identities = 53/230 (23%), Positives = 86/230 (37%), Gaps = 42/230 (18%)
Query: 96 VETQSGD--LWHADAVVIATGSEVKWLR-LESEKKFQGFGVSACATCDGFFYKN---KDV 149
VET++G+ + + ++IATGS L L F + D K +
Sbjct: 131 VETETGENEMIIPENLLIATGSRPVELPGLP-------FDGEYVISSDEALSLETLPKSL 183
Query: 150 IVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQ----------EKLFLQSNIDF 199
++VGGG E A LA VT+V +++IL +L + +
Sbjct: 184 VIVGGGVIGLEWASMLADFGVEVTVVE-----AADRILPTEDAELSKEVARLLKKLGVRV 238
Query: 200 LFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIF---R 256
+ +V GV + + G D + +++G +PNT+
Sbjct: 239 VTGAKV--------LGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEGIGLEN 290
Query: 257 HQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAA 306
+ + +I D T I+A GDV E + A A A G MAA
Sbjct: 291 TDIDVEG-GFIQI-DDFCQTKERHIYAIGDVIGE-PQLAHVAMAEGEMAA 337
>gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family
protein, proteobacterial. This model represents one of
three built for the NADPH-dependent or NADH-dependent
glutamate synthase (EC 1.4.1.13 and 1.4.1.14,
respectively) small subunit and homologs. TIGR01317
describes the small subunit (or equivalent region from
longer forms) in eukaryotes, Gram-positive bacteria, and
some other lineages, both NADH and NADPH-dependent.
TIGR01316 describes a protein of similar length, from
Archaea and a number of bacterial lineages, that forms
glutamate synthase homotetramers without a large
subunit. This model describes both glutatate synthase
small subunit and closely related paralogs of unknown
function from a number of gamma and alpha subdivision
Proteobacteria, including E. coli.
Length = 467
Score = 40.6 bits (95), Expect = 6e-04
Identities = 83/357 (23%), Positives = 140/357 (39%), Gaps = 80/357 (22%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYPGFATSIRGDW 63
++ +IG+GPAG A ARA ++ V+ ++GG ++T I P F
Sbjct: 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGG--LLTFGI---PSFKLD---KA 192
Query: 64 LMEQMRQQAENFG------TKIIQDLVVSVDLDRHP--FL----VETQSGDLWHADA--- 108
++ + R+ G ++ +D+ + L+ + FL + G L DA
Sbjct: 193 VLSRRREIFTAMGIEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGV 252
Query: 109 -----VVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAE--- 160
+IA ++ + L + V K V+V+GGG+TA +
Sbjct: 253 LQALPFLIANTRQL--MGLPESPEEPLIDVEG-----------KRVVVLGGGDTAMDCVR 299
Query: 161 EALHLAKIARRVTIVHRRS------SLRSEKILQEKLFLQSNIDFLFDTEVVDV------ 208
A+ L A VT +RR S R +E+ ++FLF+ + V +
Sbjct: 300 TAIRLG--AASVTCAYRRDEANMPGSRREVANAREE-----GVEFLFNVQPVYIECDEDG 352
Query: 209 ----IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTK--IFRHQLKMT 262
+G + P G R G+ F D + +A G++P+ + H + +
Sbjct: 353 RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLD 412
Query: 263 NTNYIWTMPDS---TATSIPGIFAAGDV---ADERYRQAITAAAMGCMAALEVEHYL 313
+ I T S T+ P IFA GD AD +TA A G AA + +L
Sbjct: 413 SWGRIITGDVSYLPYQTTNPKIFAGGDAVRGAD----LVVTAVAEGRQAAQGILDWL 465
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases of
animals, yeast, and a number of animal-resident
bacteria.
Length = 450
Score = 39.8 bits (93), Expect = 9e-04
Identities = 70/322 (21%), Positives = 119/322 (36%), Gaps = 64/322 (19%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG-----------------QLMITESIE 50
L+IG G G +A AA K +++ LGG L
Sbjct: 5 YLVIGGGSGGIASARRAAEHGAKALLVEAKKLGGTCVNVGCVPKKVMWYASDLAERMHDA 64
Query: 51 NYPGFATSIRGDWLMEQMRQQAE---NFGTKIIQDLVVSVDLDR---HPFLVETQ----S 100
GF ++ + +++++ + + I Q + +D H + +
Sbjct: 65 ADYGFYQNLENTFNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVN 124
Query: 101 GDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFY---KNKDVIVVGGGNT 157
G + A ++IATG + + G DGFF K V++VG G
Sbjct: 125 GRDYTAPHILIATGGKPSFPE-------NIPGAELGTDSDGFFALEELPKRVVIVGAGYI 177
Query: 158 AAEEALHLAKIARRVTIVHRRSS-LRS-EKILQEKL---FLQSNIDFLFDTEVVDVIGSI 212
A E A L + +V R LRS + ++ E + + + I+ ++ V V ++
Sbjct: 178 AVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVHKLSKPVKVEKTV 237
Query: 213 PEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNT-------N 265
+ G + +VD + AIG KPNTK L + N
Sbjct: 238 EGKLVIHFEDGKSID----------DVDELIWAIGRKPNTK----GLGLENVGIKLNEKG 283
Query: 266 YIWTMPDSTATSIPGIFAAGDV 287
I + + T++PGI+A GDV
Sbjct: 284 QI-IVDEYQNTNVPGIYALGDV 304
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 39.7 bits (93), Expect = 0.001
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 28/148 (18%)
Query: 151 VVGGGNTAAEEALHLAKIARRVTIVHRRSSL--RSEKILQE--KLFLQSN-IDFLFDTEV 205
++GGGN E A K+ +VT++ S++ R E + K +++ + I FL +
Sbjct: 162 IIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHT 221
Query: 206 VDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTN 265
+V + + + + F D + A G KPNT+ L + NT+
Sbjct: 222 TEVKNDGDQV--------LVVTEDETYRF-----DALLYATGRKPNTE----PLGLENTD 264
Query: 266 YIWT------MPDSTATSIPGIFAAGDV 287
T + D TS+PG+FA GDV
Sbjct: 265 IELTERGAIKVDDYCQTSVPGVFAVGDV 292
>gnl|CDD|180409 PRK06115, PRK06115, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 39.4 bits (92), Expect = 0.001
Identities = 22/42 (52%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGG 41
MAS+D ++IIG GP GY AAI A + LK + G S LGG
Sbjct: 1 MASYD--VVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGG 40
>gnl|CDD|161797 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model when
searched with a partial length search brings in proteins
with a dinucleotide-binding motif (Rossman fold) over
the initial 40 residues of the model, including
oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae.
Length = 400
Score = 39.1 bits (92), Expect = 0.002
Identities = 48/179 (26%), Positives = 71/179 (39%), Gaps = 45/179 (25%)
Query: 9 LIIGSGPAGYTAAIYAARAMLKPVII-----AGSDL----GGQLMIT------ESIENYP 53
+IIG G AG AAI AAR L +++ G L GG+ +T E + YP
Sbjct: 1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYP 60
Query: 54 GFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLW----HADAV 109
G +L + + F K + D S+ L+ L + G ++ A V
Sbjct: 61 R-----NGKFLRSALSR----FSNKDLIDFFESLGLE----LKVEEDGRVFPCSDSAADV 107
Query: 110 VIATGSEVKWL----RLES-----EKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAA 159
+ A +E+K L S +K GFGV G Y+ VI+ GG +
Sbjct: 108 LDALLNELKELGVEILTNSKVKSIKKDDNGFGV----ETSGGEYEADKVILATGGLSYP 162
>gnl|CDD|180019 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 38.7 bits (91), Expect = 0.002
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAG 36
+L+IG G AG TAA+ AA A + ++A
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEAGKRVALVAK 33
>gnl|CDD|180899 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 38.3 bits (90), Expect = 0.003
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQLMITESIENYP 53
KI I+G G AG AA A+ + + A LGG L + P
Sbjct: 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGG-LAASFEFGGLP 47
>gnl|CDD|132493 TIGR03452, mycothione_red, mycothione reductase. Mycothiol, a
glutathione analog in Mycobacterium tuberculosis and
related species, can form a disulfide-linked dimer
called mycothione. This enzyme can reduce mycothione to
regenerate two mycothiol molecules. The enzyme shows
some sequence similarity to glutathione-disulfide
reductase, trypanothione-disulfide reductase, and
dihydrolipoamide dehydrogenase. The characterized
protein from M. tuberculosis, a homodimer, has FAD as a
cofactor, one per monomer, and uses NADPH as a
substrate.
Length = 452
Score = 37.8 bits (88), Expect = 0.004
Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 23/99 (23%)
Query: 93 PFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDV--- 149
P + T G+ D +VIA GS + + A A ++ N+D+
Sbjct: 119 PRTLRTGDGEEITGDQIVIAAGS-------------RPYIPPAIADSGVRYHTNEDIMRL 165
Query: 150 -------IVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
++VGGG AAE A + + RVTIV+R + L
Sbjct: 166 PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKL 204
>gnl|CDD|173157 PRK14694, PRK14694, putative mercuric reductase; Provisional.
Length = 468
Score = 38.0 bits (88), Expect = 0.004
Identities = 40/165 (24%), Positives = 71/165 (43%), Gaps = 17/165 (10%)
Query: 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVV 206
+ ++V+G A E A A++ RVT++ RS + QE + I+ F E +
Sbjct: 179 ERLLVIGASVVALELAQAFARLGSRVTVL-----ARSRVLSQEDPAVGEAIEAAFRREGI 233
Query: 207 DVIGSIPEPPLFPSVSGVRLHNKK---EGNFFERNVDGIFIAIGYKPNTKIFR-HQLKMT 262
+V+ S V + ++ E N + + +A G PNT+ + +
Sbjct: 234 EVLKQT-------QASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTENLNLESIGVE 286
Query: 263 NTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAAL 307
+ + T++ GI+AAGD D+ + AAA G AA+
Sbjct: 287 TERGAIRIDEHLQTTVSGIYAAGDCTDQP-QFVYVAAAGGSRAAI 330
>gnl|CDD|180579 PRK06467, PRK06467, dihydrolipoamide dehydrogenase; Reviewed.
Length = 471
Score = 37.6 bits (88), Expect = 0.005
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAG-SDLGG 41
++++G+GPAGY+AA AA L+ V + S LGG
Sbjct: 7 VVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGG 41
Score = 31.5 bits (72), Expect = 0.34
Identities = 15/61 (24%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 230 KEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIPGIFAAGD 286
K+ + D + +A+G PN K+ + +++ +I T++P IFA GD
Sbjct: 254 KKAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRV-DKQCRTNVPHIFAIGD 312
Query: 287 V 287
+
Sbjct: 313 I 313
>gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 639
Score = 36.9 bits (85), Expect = 0.006
Identities = 78/346 (22%), Positives = 133/346 (38%), Gaps = 70/346 (20%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLK-PVIIAGSDLGGQLMITESIENYPGFATSIRGDWLM 65
K+ +IG+GPAG A ARA ++ V ++GG M+T I P F ++
Sbjct: 312 KVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGG--MLTFGI---PPFKLDKT---VL 363
Query: 66 EQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQS------------GDLWHADA--VVI 111
Q R+ G + + D+ E + DL H DA V+
Sbjct: 364 SQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQ 423
Query: 112 A----TGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDVIVVGGGNTAAE---EALH 164
A T + + L +++ V + K V+V+GGG+T + ++
Sbjct: 424 ALPFLTAHTRQLMGLPESEEYPLTDV-----------EGKRVVVLGGGDTTMDCLRTSIR 472
Query: 165 LAKIARRVTIVHRRSSLRSEKILQEKL-FLQSNIDFLFDTE----------VVDVIGSIP 213
L A VT +RR + +E + + ++F F+ + + +G I
Sbjct: 473 LN--AASVTCAYRRDEVSMPGSRKEVVNAREEGVEFQFNVQPQYIACDEDGRLTAVGLIR 530
Query: 214 EPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPN-------TKIFRHQLKMTNTNY 266
P G R G+ FE D + +A G++ + + I + + T
Sbjct: 531 TAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGD 590
Query: 267 IWTMPDSTATSIPGIFAAGDV---ADERYRQAITAAAMGCMAALEV 309
+ +P T T + +FA GD AD +TA A G AA ++
Sbjct: 591 VGYLP--TQTHLKKVFAGGDAVHGAD----LVVTAMAAGRQAARDM 630
>gnl|CDD|180885 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 37.2 bits (87), Expect = 0.007
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41
++ ++IIG+GPAG TAA + ++ +GG
Sbjct: 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGG 41
>gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit;
Reviewed.
Length = 654
Score = 37.0 bits (86), Expect = 0.007
Identities = 50/196 (25%), Positives = 77/196 (39%), Gaps = 38/196 (19%)
Query: 147 KDVIVVGGGNTAAE---EALHLAKIARRVTIVHRRS------SLRSEKILQEKLFLQSNI 197
+V+V+GGG+TA + AL A VT +RR S + K +E+
Sbjct: 469 LNVVVLGGGDTAMDCVRTALRHG--ASNVTCAYRRDEANMPGSKKEVKNAREE-----GA 521
Query: 198 DFLFDTEVVDV----------IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIG 247
+F F+ + V + I + P G R G+ F D + +A G
Sbjct: 522 NFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFG 581
Query: 248 YKPNTKIF--RHQLKMTNTNYIWTMPDST---ATSIPGIFAAGDVADERYRQA---ITAA 299
+ P+ + H + + I +S TS P IFA GD R A +TA
Sbjct: 582 FNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGGDAV----RGADLVVTAM 637
Query: 300 AMGCMAALEVEHYLSI 315
A G AA + +L +
Sbjct: 638 AEGRHAAQGIIDWLGV 653
Score = 26.6 bits (59), Expect = 8.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVI 33
D ++ IIG+GPAG A AR + +
Sbjct: 327 DKRVAIIGAGPAGLACADVLARNGVAVTV 355
>gnl|CDD|161807 TIGR00292, TIGR00292, thiazole biosynthesis enzyme. This enzyme
is involved in the biosynthesis of the thiamine
precursor thiazole, and is repressed by thiamine.This
family includes c-thi1, a Citrus gene induced during
natural and ethylene induced fruit maturation and is
highly homologous to plant and yeast thi genes involved
in thiamine biosynthesis.
Length = 254
Score = 36.7 bits (85), Expect = 0.008
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 7/46 (15%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII-------AGSDLGGQL 43
+S ++I+G+GP+G TAA Y A+ LK ++ GS GG L
Sbjct: 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGML 66
Score = 27.9 bits (62), Expect = 3.3
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS 180
Y DVI+VG G + A +LAK +V ++ R +
Sbjct: 19 YAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLA 55
>gnl|CDD|178161 PLN02546, PLN02546, glutathione reductase.
Length = 558
Score = 36.4 bits (84), Expect = 0.010
Identities = 41/164 (25%), Positives = 65/164 (39%), Gaps = 42/164 (25%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTE 204
K + + +VGGG A E A + V + +R +K+L+ FD E
Sbjct: 251 KPEKIAIVGGGYIALEFAGIFNGLKSDVHVF-----IRQKKVLRG-----------FDEE 294
Query: 205 VVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDG----------------IFIAIGY 248
V D + S+ G+ H ++ ++ DG + A G
Sbjct: 295 VRDFVAEQM------SLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGR 348
Query: 249 KPNTKIFRHQ---LKMTNTNYIWTMPDSTATSIPGIFAAGDVAD 289
KPNTK + +KM I + + + TS+P I+A GDV D
Sbjct: 349 KPNTKNLGLEEVGVKMDKNGAI-EVDEYSRTSVPSIWAVGDVTD 391
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 36.1 bits (83), Expect = 0.013
Identities = 72/351 (20%), Positives = 117/351 (33%), Gaps = 74/351 (21%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG----------QLM-----ITESI 49
+++IG G G AA AAR K ++ LGG ++M I + +
Sbjct: 48 VYDLIVIGGGSGGMAAARRAARNKAKVALVEKDYLGGTCVNVGCVPKKIMFNAASIHDIL 107
Query: 50 EN--YPGFATSI---------RGDWLMEQMRQQAENFGTKIIQDLVVSVD--LDRHPFLV 96
EN + GF T R D + ++ K + L + L+
Sbjct: 108 ENSRHYGFDTQFSFNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLI 167
Query: 97 ETQSGDLWHADAVV--IATGSEVKWLRLESEKKFQGF----------------GVSACAT 138
+ S AD T +L+ + +G G +
Sbjct: 168 KKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEGKNILIAVGNKPIFPDVKGKEFTIS 227
Query: 139 CDGFFY--KNKDVIVVGGGNTAAEEALHLAKIARRVTI-----VHRRSSLRS--EKILQE 189
D FF + K + + G G A E L + R+ LR E I+ E
Sbjct: 228 SDDFFKIKEAKRIGIAGSGYIAVE----LINVVNRLGAESYIFARGNRLLRKFDETIINE 283
Query: 190 KL--FLQSNIDFLFDTEVVDVIGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIG 247
++NI+ + V+ I + E L +S R + D + +G
Sbjct: 284 LENDMKKNNINIITHA-NVEEIEKVKEKNLTIYLSDGRK---------YEHFDYVIYCVG 333
Query: 248 YKPNTKIFRHQLKM--TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAI 296
PNT+ + T YI + D+ TS+ I+A GD + Q I
Sbjct: 334 RSPNTEDLNLKALNIKTPKGYI-KVDDNQRTSVKHIYAVGDCCMVKKNQEI 383
>gnl|CDD|181132 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 36.2 bits (84), Expect = 0.013
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
Query: 229 KKEGNFFERNVDGIFIAIGYKPNTKIF---RHQLKMTNTNYIWTMPDSTATSIPGIFAAG 285
KK+G E D + AIG+ P + + + + +T+ I + D T++P I+A G
Sbjct: 252 KKDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAI-AIDDYMRTNVPHIYAIG 310
Query: 286 DVADERYRQAITAAAMGCMAA 306
DV + + A A A G +AA
Sbjct: 311 DVT-AKLQLAHVAEAQGVVAA 330
Score = 34.6 bits (80), Expect = 0.038
Identities = 14/34 (41%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
M +H ++++G+GP GY AAI AA+ LK ++
Sbjct: 1 MMTH-YDVVVLGAGPGGYVAAIRAAQLGLKTAVV 33
>gnl|CDD|183786 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 35.9 bits (83), Expect = 0.014
Identities = 16/41 (39%), Positives = 29/41 (70%), Gaps = 3/41 (7%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41
A D +++IG+G AG +AA++AA A LK +++ ++ +GG
Sbjct: 15 AEFD--VIVIGAGAAGMSAALFAAIAGLKVLLVERTEYVGG 53
>gnl|CDD|162543 TIGR01813, flavo_cyto_c, flavocytochrome c. This model describes
a family of redox proteins related to the succinate
dehydrogenases and fumarate reductases of E. coli,
mitochondria, and other well-characterized systems. A
member of this family from Shewanella frigidimarina
NCIMB400 is characterized as a water-soluble
periplasmic protein with four heme groups, a
non-covalently bound FAD, and essentially
unidirectional fumarate reductase activity. At least
seven distinct members of this family are found in
Shewanella oneidensis, a species able to use a wide
variety of pathways for respiraton.
Length = 439
Score = 35.8 bits (83), Expect = 0.017
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVII 34
++++GSG AG +AA+ A +A V++
Sbjct: 2 VVVVGSGFAGLSAALSAKKAGAANVVL 28
>gnl|CDD|185416 PTZ00052, PTZ00052, thioredoxin reductase; Provisional.
Length = 499
Score = 35.2 bits (81), Expect = 0.021
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 7/71 (9%)
Query: 240 DGIFIAIGYKPNTKIFR-HQLKM---TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQA 295
D + A G KP+ K + + + + I + T+IP IFA GDV + R
Sbjct: 268 DTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP---NDCTNIPNIFAVGDVVEGRPELT 324
Query: 296 ITAAAMGCMAA 306
A G + A
Sbjct: 325 PVAIKAGILLA 335
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 35.3 bits (81), Expect = 0.023
Identities = 49/203 (24%), Positives = 80/203 (39%), Gaps = 26/203 (12%)
Query: 99 QSGDLWHADAVVIATGSEVKWLRLES---EKKFQGFGVSACATCDGFFYKNKDVIVVGGG 155
+G+ WH D + IATG+ + L L E+ F A + V++VG G
Sbjct: 94 TNGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAG 153
Query: 156 NTAAEEALHLAKIARRVTIVHRRSSLR---SEKILQEKLF---LQSNIDFLFDTEVVDVI 209
E A + +VT++ +++ + +Q L Q+ + L + + V+
Sbjct: 154 TIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVV 213
Query: 210 -GSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQLKMTNTNYIW 268
G E L SG L D + IG N ++ R + + N I
Sbjct: 214 DGEKVELTL---QSGETLQA-----------DVVIYGIGISANDQLAR-EANLDTANGI- 257
Query: 269 TMPDSTATSIPGIFAAGDVADER 291
+ ++ T P IFA GDVA R
Sbjct: 258 VIDEACRTCDPAIFAGGDVAITR 280
>gnl|CDD|173190 PRK14727, PRK14727, putative mercuric reductase; Provisional.
Length = 479
Score = 34.9 bits (80), Expect = 0.026
Identities = 83/352 (23%), Positives = 131/352 (37%), Gaps = 81/352 (23%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG----------QLMI----------T 46
+ IIGSG A + AAI AA + II G+D +GG +++I +
Sbjct: 19 VAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRS 78
Query: 47 ESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLVVS---VDL--------DRHPFL 95
+ A SI L+ Q + + E Q ++ + L D + +
Sbjct: 79 NPFDGVEAVAPSIDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLV 138
Query: 96 VETQSG--DLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATC-DGFFYKN--KDVI 150
V G + AD +IATGS + G + T + F +
Sbjct: 139 VRLHDGGERVLAADRCLIATGST------PTIPPIPGLMDTPYWTSTEALFSDELPASLT 192
Query: 151 VVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEK-ILQEKL---FLQSNIDFLFDTEVV 206
V+G AAE A A++ RVTI+ R + L E +L E L F + I+ L +T+
Sbjct: 193 VIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGIEVLNNTQA- 251
Query: 207 DVIGSIPEPPLFPSVSGVRLHNKKEGNFFERN-----VDGIFIAIGYKPNTKIFRHQLKM 261
+ + G + + I+ G NT H L +
Sbjct: 252 -----------------SLVEHDDNGFVLTTGHGELRAEKLLISTGRHANT----HDLNL 290
Query: 262 ------TNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAAL 307
T+T+ + + TS P I+AAGD +D + AAA G A +
Sbjct: 291 EAVGVTTDTSGAIVVNPAMETSAPDIYAAGDCSDLP-QFVYVAAAAGSRAGI 341
>gnl|CDD|162324 TIGR01372, soxA, sarcosine oxidase, alpha subunit family,
heterotetrameric form. This model describes the alpha
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason.Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms.
Length = 985
Score = 34.3 bits (79), Expect = 0.042
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 29/129 (22%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSD--LGGQLM-ITESIENYPGFATSIRGDWL 64
+L++G+GPAG AA+ AARA + VI+ GG L+ E+I+ P DW
Sbjct: 166 VLVVGAGPAGLAAALAAARAGAR-VILVDEQPEAGGSLLSEAETIDGKPA------ADWA 218
Query: 65 MEQMRQQAENFGTKIIQ----------DLV-----VSVDLDRHPFLVETQSGDLWH--AD 107
+ + ++ + V V+ LD P V + LW A
Sbjct: 219 AATVAELTAMPEVTLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRER--LWRIRAK 276
Query: 108 AVVIATGSE 116
VV+ATG+
Sbjct: 277 RVVLATGAH 285
>gnl|CDD|162668 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates.
Length = 295
Score = 34.2 bits (79), Expect = 0.045
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR 182
DV+VVG G A A LA RV ++ ++S R
Sbjct: 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36
Score = 33.8 bits (78), Expect = 0.066
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
++++G+GPAG +AA A L+ +++
Sbjct: 3 VVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPR 36
>gnl|CDD|180529 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 34.1 bits (79), Expect = 0.046
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
S +++IG+GP GY AAI AA+ LK I
Sbjct: 2 SKQFDVVVIGAGPGGYVAAIRAAQLGLKVACI 33
Score = 28.7 bits (65), Expect = 2.0
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 222 SGVRL-HNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNTNYIWTMPDSTATS 277
GV + + +G VD + ++IG PNT + LK+ +I + D T+
Sbjct: 255 KGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFI-PVDDHCRTN 313
Query: 278 IPGIFAAGDVA 288
+P ++A GDV
Sbjct: 314 VPNVYAIGDVV 324
>gnl|CDD|132421 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase.
Length = 419
Score = 33.8 bits (78), Expect = 0.057
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIA 35
++IIG G AG + A+ A A K IIA
Sbjct: 3 VIIIGGGLAGLSCALRLAEAGKKCAIIA 30
>gnl|CDD|162352 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant.
The tripeptide glutathione is an important reductant,
e.g., for maintaining the cellular thiol/disulfide
status and for protecting against reactive oxygen
species such as hydrogen peroxide. Glutathione-disulfide
reductase regenerates reduced glutathione from oxidized
glutathione (glutathione disulfide) + NADPH. This model
represents one of two closely related subfamilies of
glutathione-disulfide reductase. Both are closely
related to trypanothione reductase, and separate models
are built so each of the three can describe proteins
with conserved function. This model describes
glutathione-disulfide reductases of plants and some
bacteria, including cyanobacteria.
Length = 446
Score = 33.6 bits (77), Expect = 0.065
Identities = 79/363 (21%), Positives = 130/363 (35%), Gaps = 94/363 (25%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL-GGQLMI---------------TES 48
D + +IG+G G AA AA V IA GG +I
Sbjct: 2 DYDLFVIGAGSGGVRAARLAA-NHGAKVAIAEEPRVGGTCVIRGCVPKKLMVYGSTFGGE 60
Query: 49 IENYPGFATSI---RGDW-------------LMEQMRQQAENFGTKIIQDLVVSVDLDRH 92
E+ G+ ++ R DW L ++ N G ++++ V
Sbjct: 61 FEDAAGYGWTVGKARFDWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVG---- 116
Query: 93 PFLVET-QSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFY---KNKD 148
P VE Q G + A ++IA G + L G T + F+ K
Sbjct: 117 PNTVEVLQDGTTYTAKKILIAVGGRPQKPNLP--------GHELGITSNEAFHLPTLPKS 168
Query: 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVVDV 208
++++GGG A E A + +VT+++ R E IL+ FD ++ +
Sbjct: 169 ILILGGGYIAVEFAGIWRGLGVQVTLIY-----RGELILRG-----------FDDDMRAL 212
Query: 209 IGSIPEPPLFPSVSGVRLHNKKEGNFFERNVDGIFI---------------AIGYKPNTK 253
+ E G+R+H + + DG+ + A G PNTK
Sbjct: 213 LARNMEG------RGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK 266
Query: 254 ---IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMG-CMAALEV 309
+ +++ + I + + + TSIP I+A GDV D R +T A+
Sbjct: 267 GLGLEAAGVELNDAGAI-AVDEYSRTSIPSIYAVGDVTD---RINLTPVAIMEATCFANT 322
Query: 310 EHY 312
E
Sbjct: 323 EFG 325
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 33.4 bits (77), Expect = 0.076
Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 23/99 (23%)
Query: 93 PFLVETQSGDLWHADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKNKDV--- 149
P + T G+ AD VVIA GS + A ++ + +
Sbjct: 116 PKTLRTGDGEEITADQVVIAAGS-------------RPVIPPVIADSGVRYHTSDTIMRL 162
Query: 150 -------IVVGGGNTAAEEALHLAKIARRVTIVHRRSSL 181
++VGGG AAE A + + RVT+V+R L
Sbjct: 163 PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRL 201
>gnl|CDD|178222 PLN02612, PLN02612, phytoene desaturase.
Length = 567
Score = 33.3 bits (76), Expect = 0.081
Identities = 16/38 (42%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQL 43
K++I G+G AG + A Y A A KP+++ D LGG++
Sbjct: 95 KVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKV 132
>gnl|CDD|180584 PRK06481, PRK06481, fumarate reductase flavoprotein subunit;
Validated.
Length = 506
Score = 33.3 bits (76), Expect = 0.083
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVII 34
I+I+G+G AG +AAI A A + PVI+
Sbjct: 64 IVIVGAGGAGMSAAIEAKDAGMNPVIL 90
>gnl|CDD|181124 PRK07803, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 626
Score = 33.1 bits (76), Expect = 0.093
Identities = 10/18 (55%), Positives = 15/18 (83%)
Query: 271 PDSTATSIPGIFAAGDVA 288
PD+ A ++PG+FAAG+ A
Sbjct: 398 PDTGAATVPGLFAAGECA 415
Score = 31.2 bits (71), Expect = 0.41
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40
H +++IG+G AG AAI A L+ ++ S G
Sbjct: 7 HSYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFG 43
>gnl|CDD|185065 PRK15110, PRK15110, antimicrobial peptide ABC transporter permease
SapB; Provisional.
Length = 321
Score = 33.1 bits (76), Expect = 0.10
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 18/71 (25%)
Query: 29 LKPVIIAGSDLGGQL-------MITESIENYPGFATSIRGDWLMEQMRQQ---AENFGTK 78
L PVI LG Q MITE + ++PG G WL+ +RQQ A + G
Sbjct: 238 LPPVI---PRLGLQFSTMLTLAMITEMVFSWPGL-----GRWLINAIRQQDYAAISAGVM 289
Query: 79 IIQDLVVSVDL 89
++ LV+ V++
Sbjct: 290 VVGSLVIIVNV 300
>gnl|CDD|180495 PRK06263, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 543
Score = 32.6 bits (75), Expect = 0.14
Identities = 18/37 (48%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
+ +LIIGSG AG AAI A R K V+I L G
Sbjct: 7 ITDVLIIGSGGAGARAAIEAERG--KNVVIVSKGLFG 41
>gnl|CDD|179767 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 32.5 bits (75), Expect = 0.14
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
+ + I+G+GP+G TAA Y A+A LK +
Sbjct: 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVF 54
Score = 30.5 bits (70), Expect = 0.53
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 6/37 (16%)
Query: 148 DVIVVGGGN---TAAEEALHLAKIARRVTIVHRRSSL 181
DV +VG G TAA LAK +V + R+ S
Sbjct: 27 DVAIVGAGPSGLTAAYY---LAKAGLKVAVFERKLSF 60
>gnl|CDD|183783 PRK12835, PRK12835, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 584
Score = 32.5 bits (74), Expect = 0.15
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 4 HDSKILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGG 41
+ +L++GSG G TAA+ AA L +++ + GG
Sbjct: 10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGG 48
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 32.2 bits (74), Expect = 0.18
Identities = 13/20 (65%), Positives = 14/20 (70%)
Query: 8 ILIIGSGPAGYTAAIYAARA 27
I +IG GPAG AAI ARA
Sbjct: 10 IAVIGGGPAGLAAAIALARA 29
Score = 26.8 bits (60), Expect = 7.1
Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 9/59 (15%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSS---LRSEKILQEKLFLQSNIDFL 200
++ D+ V+GGG A+ LA+ V +V LR+ L +I FL
Sbjct: 6 EHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTA------LLGPSIRFL 58
>gnl|CDD|181140 PRK07843, PRK07843, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 31.5 bits (72), Expect = 0.28
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
M + ++++GSG AG AA+ AA L V++
Sbjct: 3 MTVQEYDVVVVGSGAAGMVAALTAAHRGLSTVVV 36
>gnl|CDD|183787 PRK12844, PRK12844, 3-ketosteroid-delta-1-dehydrogenase;
Reviewed.
Length = 557
Score = 31.6 bits (72), Expect = 0.30
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLGG 41
++++GSG G AA+ AA + L+P+I+ D G
Sbjct: 9 VVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVG 42
>gnl|CDD|178083 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 31.3 bits (71), Expect = 0.32
Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRR-----SSLRSEKIL 187
DV+VVGGG T A AL A RV +V R +S RS K++
Sbjct: 73 DVLVVGGGATGAGVALDAATRGLRVGLVEREDFSSGTSSRSTKLI 117
>gnl|CDD|181564 PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 31.3 bits (71), Expect = 0.34
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
D+ VVGGG A AL AK R V ++
Sbjct: 5 DIAVVGGGMVGAATALGFAKQGRSVAVI 32
>gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional.
Length = 604
Score = 31.3 bits (71), Expect = 0.34
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 5 DSKILIIGSGPAGYTAAIYAA 25
+ K+ I+GSGPAG +AA + A
Sbjct: 283 NKKVAIVGSGPAGLSAAYFLA 303
>gnl|CDD|178558 PLN02976, PLN02976, amine oxidase.
Length = 1713
Score = 31.4 bits (71), Expect = 0.35
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVII-AGSDLGGQ 42
KI+++G+GPAG TAA + R ++ A S +GG+
Sbjct: 695 KIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGR 731
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 31.2 bits (71), Expect = 0.36
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVII 34
+ +L+IGSG AG +AA+ AA LK +++
Sbjct: 12 ECDVLVIGSGAAGLSAAVTAAWHGLKVIVV 41
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 31.0 bits (70), Expect = 0.38
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
DVI+VG G + A LAK RRV ++ R
Sbjct: 45 DVIIVGAGVGGSALAYALAKDGRRVHVIER 74
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 30.7 bits (70), Expect = 0.51
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
D+ +VGGG A AL LA+ V ++
Sbjct: 7 DIAIVGGGMVGAALALGLAQHGFSVAVL 34
>gnl|CDD|162642 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4, ) and UbiF (which acts at position 5). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF.
Length = 385
Score = 30.6 bits (70), Expect = 0.55
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSDLG 40
I+I+G G G A+ AR+ LK +I +
Sbjct: 2 IVIVGGGMVGLALALALARSGLKIALIEATPAE 34
Score = 27.2 bits (61), Expect = 5.7
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSE 184
D+++VGGG AL LA+ ++ ++ + +
Sbjct: 1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAA 37
>gnl|CDD|173442 PTZ00153, PTZ00153, lipoamide dehydrogenase; Provisional.
Length = 659
Score = 30.7 bits (69), Expect = 0.58
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 10 IIGSGPAGYTAAIYAARAMLKPVIIAGSD--LGG 41
IIG G G+ AAI A LK +I G D +GG
Sbjct: 121 IIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGG 154
>gnl|CDD|130490 TIGR01423, trypano_reduc, trypanothione-disulfide reductase.
Trypanothione, a glutathione-modified derivative of
spermidine, is (in its reduced form) an important
antioxidant found in trypanosomatids (Crithidia,
Leishmania, Trypanosoma). This model describes
trypanothione reductase, a possible antitrypanosomal
drug target closely related to some forms of glutathione
reductase.
Length = 486
Score = 30.3 bits (68), Expect = 0.61
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 31/213 (14%)
Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSACATCDGFFYKN---KDVIVVGGGNTAAEEA 162
A+ +++ATGS + L + G+ C + + FY + + V+ VGGG + E A
Sbjct: 152 AEHILLATGSWPQMLGIP--------GIEHCISSNEAFYLDEPPRRVLTVGGGFISVEFA 203
Query: 163 -LHLAKIAR--RVTIVHRRSS-LRS-EKILQEKLFLQSNIDFLFDTEVVDVIGSIPEPPL 217
+ A R +VT+ +R + LR + L+++L Q ++++ + +
Sbjct: 204 GIFNAYKPRGGKVTLCYRNNMILRGFDSTLRKELTKQ------LRANGINIMTNENPAKV 257
Query: 218 FPSVSGVRLHNKKEGNFFERNVDGIFIAIGYKPNTKIFRHQ---LKMTNTNYIWTMPDST 274
+ G + + G +VD + +AIG P T+ + +++T I + + +
Sbjct: 258 TLNADGSKHVTFESGK--TLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAI-QVDEFS 314
Query: 275 ATSIPGIFAAGDVADERYRQAITAAAMGCMAAL 307
T++P I+A GDV D R +T A+ AA
Sbjct: 315 RTNVPNIYAIGDVTD---RVMLTPVAINEGAAF 344
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 30.3 bits (68), Expect = 0.69
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 7/57 (12%)
Query: 9 LIIGSGPAGYTAAIYAARAMLKPVII-----AGS-DLGGQLMITESIEN-YPGFATS 58
+++G+G AG AA+ ARA L ++I AG ++ G + ++E PGFA S
Sbjct: 9 IVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAAS 65
>gnl|CDD|177829 PLN02172, PLN02172, flavin-containing monooxygenase FMO GS-OX.
Length = 461
Score = 30.2 bits (68), Expect = 0.72
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 144 YKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKIL---QEKLFLQSNIDFL 200
+KN+ V+V+G + A+ + +AK+A+ V I R S + + L Q L++ S ID
Sbjct: 202 FKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTYEKLPVPQNNLWMHSEIDTA 261
Query: 201 FD 202
+
Sbjct: 262 HE 263
>gnl|CDD|185578 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 30.2 bits (68), Expect = 0.82
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKL 191
+ DVI+VGG A L+K R+V ++ R + ++I+ E L
Sbjct: 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDLFSKPDRIVGELL 78
>gnl|CDD|183785 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 29.7 bits (67), Expect = 0.95
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGG 41
+L+IGSG G +AAI A + L V++ GG
Sbjct: 12 VLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGG 46
>gnl|CDD|181289 PRK08205, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 583
Score = 29.6 bits (67), Expect = 1.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAA 25
M H ++I+G+G AG AAI A
Sbjct: 1 MQQHRYDVVIVGAGGAGMRAAIEAG 25
>gnl|CDD|178444 PLN02852, PLN02852, ferredoxin-NADP+ reductase.
Length = 491
Score = 29.7 bits (67), Expect = 1.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARAMLK 30
S + ++GSGPAG+ Y A +LK
Sbjct: 23 TSEPLHVCVVGSGPAGF----YTADKLLK 47
>gnl|CDD|178123 PLN02507, PLN02507, glutathione reductase.
Length = 499
Score = 29.8 bits (67), Expect = 1.1
Identities = 39/161 (24%), Positives = 62/161 (38%), Gaps = 41/161 (25%)
Query: 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLFLQSNIDFLFDTEVV 206
K +V+GGG A E A + V + R+ +L L+ FD E+
Sbjct: 204 KRAVVLGGGYIAVEFASIWRGMGATVDLFFRK-----------ELPLRG-----FDDEMR 247
Query: 207 DVIGSIPEPPLFPSVSGVRLH--------NKKEG-------NFFERNVDGIFIAIGYKPN 251
V+ E G+ LH K EG + E D + A G PN
Sbjct: 248 AVVARNLEG------RGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPN 301
Query: 252 TKIFRHQ---LKMTNTNYIWTMPDSTATSIPGIFAAGDVAD 289
TK + +++ + + + + T+IP I+A GDV +
Sbjct: 302 TKRLNLEAVGVELDKAGAV-KVDEYSRTNIPSIWAIGDVTN 341
>gnl|CDD|171762 PRK12839, PRK12839, hypothetical protein; Provisional.
Length = 572
Score = 29.8 bits (67), Expect = 1.1
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 15/63 (23%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRG 61
+H ++++GSG G +AA+ AA K +++ + GG AT+ G
Sbjct: 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGG--------------ATAWSG 51
Query: 62 DWL 64
W+
Sbjct: 52 GWM 54
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene cyclases.
The plant lycopene epsilon cyclases also transform
neurosporene to alpha zeacarotene.
Length = 388
Score = 29.7 bits (67), Expect = 1.1
Identities = 26/144 (18%), Positives = 41/144 (28%), Gaps = 44/144 (30%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIAGS-DLGGQLMITESIENY----PGFATSIRGD 62
+ +IG GPAG A+ AR L+ +I + G Y + D
Sbjct: 2 LAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN-------HTYGVWDDDLSDLGLAD 54
Query: 63 -----W--------------------------LMEQMRQQAENFGTKIIQDLVVSVDLDR 91
W L E++ Q+ G ++ + + D
Sbjct: 55 CVEHVWPDVYEYRFPKQPRKLGTAYGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADG 114
Query: 92 -HPFLVETQSGDLWHADAVVIATG 114
V G A V+ A G
Sbjct: 115 VALSTVYCAGGQRIQARLVIDARG 138
>gnl|CDD|180450 PRK06184, PRK06184, hypothetical protein; Provisional.
Length = 502
Score = 29.2 bits (66), Expect = 1.3
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 8 ILIIGSGPAGYTAAIYAAR 26
+LI+G+GP G T AI AR
Sbjct: 6 VLIVGAGPTGLTLAIELAR 24
>gnl|CDD|162817 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein.
Length = 337
Score = 29.3 bits (66), Expect = 1.4
Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 53 PGFATSIRGDW------------LMEQMRQQAENFGTKII-QDLVVSVDLD-RHPFLVET 98
P + IRG L++ + + E G +II V +++ + T
Sbjct: 116 PYLSGGIRGAVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVT 175
Query: 99 QSGDLWHADAVVIATGS 115
SGD+ AD VV+A G+
Sbjct: 176 PSGDVQ-ADQVVLAAGA 191
>gnl|CDD|181345 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 29.1 bits (66), Expect = 1.5
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARA 27
+ D +L+IG G A AA+ A A
Sbjct: 2 ASMVD--VLVIGGGNAALCAALAAREA 26
Score = 27.5 bits (62), Expect = 5.0
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
DV+V+GGGN A AL + V ++
Sbjct: 6 DVLVIGGGNAALCAALAAREAGASVLLLEA 35
>gnl|CDD|162820 TIGR02356, adenyl_thiF, thiazole biosynthesis adenylyltransferase
ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF
family of proteins (pfam00899) include a number of
members encoded in the midst of thiamine biosynthetic
operons. This mix of known and putative ThiF proteins
shows a deep split in phylogenetic trees, with the
Escherichia. coli ThiF and the E. coli MoeB proteins
seemingly more closely related than E. coli ThiF and
Campylobacter (for example) ThiF. This model represents
the more widely distributed clade of ThiF proteins such
found in E. coli.
Length = 202
Score = 29.2 bits (66), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 5 DSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
+S +LIIG+G G AA+Y A A + ++I D
Sbjct: 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54
>gnl|CDD|180179 PRK05638, PRK05638, threonine synthase; Validated.
Length = 442
Score = 29.0 bits (65), Expect = 1.6
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 134 SACATCDGFFYKNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKILQEKLF 192
+ A G Y IV GN AA A + A+ + +V R + K++Q F
Sbjct: 100 ATVAVSYGLPYAANGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDK-GKLIQMIAF 157
>gnl|CDD|181125 PRK07804, PRK07804, L-aspartate oxidase; Provisional.
Length = 541
Score = 29.2 bits (66), Expect = 1.6
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
+ ++++GSG AG TAA+ A RA + +++
Sbjct: 14 RDAADVVVVGSGVAGLTAALAARRAGRRVLVV 45
Score = 28.0 bits (63), Expect = 3.0
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
DV+VVG G AL + RRV +V
Sbjct: 18 DVVVVGSGVAGLTAALAARRAGRRVLVV 45
Score = 27.6 bits (62), Expect = 4.0
Identities = 9/13 (69%), Positives = 13/13 (100%)
Query: 276 TSIPGIFAAGDVA 288
TS+PG++AAG+VA
Sbjct: 368 TSVPGLYAAGEVA 380
>gnl|CDD|180733 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 29.1 bits (66), Expect = 1.7
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 4 HDSKILIIGSGPAGYTAAIYAAR 26
D+ ILIIG G AG AA A
Sbjct: 10 VDTDILIIGGGMAGCGAAFEAKE 32
>gnl|CDD|182134 PRK09897, PRK09897, hypothetical protein; Provisional.
Length = 534
Score = 28.9 bits (65), Expect = 1.8
Identities = 36/152 (23%), Positives = 60/152 (39%), Gaps = 43/152 (28%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLK---PVII--------AG------SDLGGQLMITE-- 47
KI I+G+GP G IY ++L+ P+ I AG + ++M+
Sbjct: 3 KIAIVGAGPTG----IYTFFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKMMLANIA 58
Query: 48 SIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHAD 107
SIE P + T + +WL +Q + +G V L FL G+ +
Sbjct: 59 SIEIPPIYCTYL--EWLQKQEDSHLQRYG-------VKKETLHDRQFLPRILLGEYFRD- 108
Query: 108 AVVIATGSEVKWLRLESEKKFQGFGVSACATC 139
++LRL + + Q F V+ +C
Sbjct: 109 ----------QFLRLVDQARQQKFAVAVYESC 130
>gnl|CDD|180382 PRK06069, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 577
Score = 28.9 bits (65), Expect = 1.8
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARA 27
+D ++I+GSG AG AA+ AA
Sbjct: 5 KYD--VVIVGSGLAGLRAAVAAAER 27
>gnl|CDD|181360 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 28.8 bits (65), Expect = 2.0
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 8 ILIIGSGPAGYTAA 21
+LI+G GPAG T A
Sbjct: 35 VLIVGCGPAGLTLA 48
>gnl|CDD|162664 TIGR02023, BchP-ChlP, geranylgeranyl reductase. This model
represents a group of geranylgeranyl reductases
specific for the biosyntheses of bacteriochlorophyll
and chlorophyll. It is unclear whether the processes of
isoprenoid ligation to the chlorin ring and reduction
of the geranylgeranyl chain to a phytyl chain are
necessarily ordered the same way in all species (see
introduction to ).
Length = 388
Score = 28.6 bits (64), Expect = 2.3
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 8 ILIIGSGPAGYTAAIYAARA 27
+ +IG GP+G TAA ARA
Sbjct: 3 VAVIGGGPSGATAAETLARA 22
Score = 28.6 bits (64), Expect = 2.4
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHR 177
DV V+GGG + A A LA+ ++ R
Sbjct: 2 DVAVIGGGPSGATAAETLARAGIETILLER 31
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears to
be present in all complete eubacterial genomes so far,
as well as Saccharomyces cerevisiae. A subset of these
organisms have a closely related protein. GidA is absent
in the Archaea. It appears to act with MnmE, in an
alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34 in
certain tRNAs. The shorter, related protein, previously
called gid or gidA(S), is now called TrmFO (see model
TIGR00137).
Length = 617
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
DVIV+GGG+ E AL A++ + ++
Sbjct: 2 DVIVIGGGHAGCEAALAAARMGAKTLLL 29
>gnl|CDD|179222 PRK01103, PRK01103, formamidopyrimidine/5-formyluracil/
5-hydroxymethyluracil DNA glycosylase; Validated.
Length = 274
Score = 28.5 bits (65), Expect = 2.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 150 IVVGGGNTAAEEALHLAKI 168
+VVG GN A+EAL A I
Sbjct: 167 VVVGVGNIYADEALFRAGI 185
>gnl|CDD|181552 PRK08773, PRK08773, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 28.7 bits (64), Expect = 2.4
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 147 KDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLR 182
+D ++VGGG A AL LA V +V R R
Sbjct: 7 RDAVIVGGGVVGAACALALADAGLSVALVEGREPPR 42
>gnl|CDD|152305 pfam11869, DUF3389, Protein of unknown function (DUF3389). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are about 80 amino acids in length.
Length = 75
Score = 28.5 bits (64), Expect = 2.5
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 109 VVIATGSEVKW-LRLESEKKFQ 129
V+IA G VKW L+L+ E++
Sbjct: 43 VIIANGGGVKWSLKLDDEEQLD 64
>gnl|CDD|181640 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 28.3 bits (64), Expect = 2.8
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAA 25
H +LIIGSG AG + A+ A
Sbjct: 4 SPEHQCDVLIIGSGAAGLSLALRLA 28
>gnl|CDD|181663 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 28.4 bits (64), Expect = 2.8
Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 22/93 (23%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRS----------------SLRSEKILQE-- 189
D++VVG G A LA +VT++ R+ + S +ILQ
Sbjct: 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLG 64
Query: 190 --KLFLQSNIDFLFDTEVVDVIGSIPEPPLFPS 220
+ I L D +V++ G P F +
Sbjct: 65 AWDRIPEDEISPLRDAKVLN--GRSPFALTFDA 95
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSDL 39
S I+++G+GPAG + A A + LK +I L
Sbjct: 1 MMHSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPL 37
>gnl|CDD|152136 pfam11700, ATG22, Vacuole effluxer Atg22 like. Autophagy is a
major survival survival mechanism in which eukaryotes
recycle cellular nutrients during stress conditions.
Atg22, Avt3 and Avt4 are partially redundant vacuolar
effluxes, which mediate the efflux of leucine and other
amino acids resulting from autophagy. This family also
includes other transporter proteins.
Length = 477
Score = 28.0 bits (63), Expect = 3.0
Identities = 7/56 (12%), Positives = 18/56 (32%), Gaps = 1/56 (1%)
Query: 254 IFRHQLKMTNTNYIWTMPDSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEV 309
+ L M+ I + ++ G F ++ R+ + + E+
Sbjct: 307 FAKTVLGMSTAALIVLSITAQLAAVLGAFLWPFLS-RRFGLKTKQTLIAIIVLWEL 361
>gnl|CDD|162238 TIGR01176, fum_red_Fp, fumarate reductase, flavoprotein subunit.
The terms succinate dehydrogenase and fumarate
reductase may be used interchangeably in certain
systems. However, a number of species have distinct
complexes, with the fumarate reductase active under
anaerobic conditions. This model represents the
fumarate reductase flavoprotein subunit from several
such species in which a distinct succinate
dehydrogenase is also found. Not all bona fide fumarate
reductases will be found by this model.
Length = 580
Score = 28.3 bits (63), Expect = 3.1
Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 17/80 (21%)
Query: 2 ASHDSKILIIGSGPAGYTAAIYAARA--MLKPVIIAG---------SDLGGQLMIT---E 47
A HD I +IG+G AG AAI AA A L +I+ + GG +T +
Sbjct: 2 AQHD--IAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRSHTVAAEGGSAAVTGDDD 59
Query: 48 SIENYPGFATSIRGDWLMEQ 67
S++ + T GDWL EQ
Sbjct: 60 SLDEH-FHDTVSGGDWLCEQ 78
>gnl|CDD|182653 PRK10694, PRK10694, acyl-CoA esterase; Provisional.
Length = 133
Score = 28.3 bits (63), Expect = 3.2
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 59 IRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
I G WLM QM +I VV+V ++ FL GD+ A + TG
Sbjct: 29 IFGGWLMSQMDIGGAILAKEIAHGRVVTVRVEGMTFLRPVAVGDVVCCYARCVKTG 84
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 28.0 bits (63), Expect = 3.2
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV 175
DV+VVGGG A AL LA+ RV ++
Sbjct: 7 DVVVVGGGLVGASLALALAQSGLRVALL 34
>gnl|CDD|183060 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 27.9 bits (63), Expect = 3.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRV------TIVHRRSS 180
DVIV+G G+ + +LA+ RV H++ S
Sbjct: 5 DVIVIGLGSMGSAAGYYLARRGLRVLGLDRFMPPHQQGS 43
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms.
Length = 380
Score = 27.9 bits (62), Expect = 3.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 6/39 (15%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIV------HRRSS 180
DVIVVG G A HLAK ++ ++ H R S
Sbjct: 2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFDLPHSRGS 40
>gnl|CDD|163182 TIGR03197, MnmC_Cterm, tRNA U-34 5-methylaminomethyl-2-thiouridine
biosynthesis protein MnmC, C-terminal domain. In
Escherichia coli, the protein previously designated YfcK
is now identified as the bifunctional enzyme MnmC. It
acts, following the action of the heterotetramer of GidA
and MnmE, in the modification of U-34 of certain tRNA to
5-methylaminomethyl-2-thiouridine (mnm5s2U). In other
bacterial, the corresponding proteins are usually but
always found as a single polypeptide chain, but
occasionally as the product of tandem genes. This model
represents the C-terminal region of the multifunctional
protein.
Length = 381
Score = 28.0 bits (63), Expect = 3.3
Identities = 8/35 (22%), Positives = 19/35 (54%)
Query: 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATGSEVK 118
+ S++ D + + +G++ A VV+A G++
Sbjct: 157 ITSLERDGEGWQLLDANGEVIAASVVVLANGAQAG 191
>gnl|CDD|179960 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 28.1 bits (64), Expect = 3.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 79 IIQDLVVSVDLDRHPFL-VETQSGDLWHADAVVIATG 114
+ Q V + ++ + V TQ G + A AVV+ TG
Sbjct: 118 LFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTG 154
Score = 26.9 bits (61), Expect = 7.4
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRV 172
DVIVVGGG+ E AL A++ +
Sbjct: 6 DVIVVGGGHAGCEAALAAARMGAKT 30
>gnl|CDD|181200 PRK08025, PRK08025, lipid A biosynthesis palmitoleoyl
acyltransferase; Reviewed.
Length = 305
Score = 27.8 bits (62), Expect = 3.5
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 14/65 (21%)
Query: 18 YTAAIYAARAMLKPVIIAGSD-LGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFG 76
Y + + AML ++ +D G +L IT +E YP QA +
Sbjct: 226 YVLSRLSGAAMLTVTMVRKADYSGYRLFITPEMEGYP-------------TDENQAAAYM 272
Query: 77 TKIIQ 81
KII+
Sbjct: 273 NKIIE 277
>gnl|CDD|181714 PRK09231, PRK09231, fumarate reductase flavoprotein subunit;
Validated.
Length = 582
Score = 28.1 bits (63), Expect = 3.7
Identities = 24/73 (32%), Positives = 34/73 (46%), Gaps = 13/73 (17%)
Query: 8 ILIIGSGPAGYTAAIYAARA--MLKPVIIAG---------SDLGGQLMITESIENYPGFA 56
+ IIG+G AG AAI AA A LK +I+ + GG + + +++
Sbjct: 7 LAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFDYHF 66
Query: 57 --TSIRGDWLMEQ 67
T GDWL EQ
Sbjct: 67 HDTVAGGDWLCEQ 79
>gnl|CDD|180727 PRK06847, PRK06847, hypothetical protein; Provisional.
Length = 375
Score = 27.9 bits (63), Expect = 3.8
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 7 KILIIGSGPAGYTAAIYAARA 27
K+LI+G G G +AAI RA
Sbjct: 6 KVLIVGGGIGGLSAAIALRRA 26
>gnl|CDD|180870 PRK07190, PRK07190, hypothetical protein; Provisional.
Length = 487
Score = 27.9 bits (62), Expect = 3.8
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVIIAGSD 38
M++ + ++IIG+GP G A L VI+ SD
Sbjct: 1 MSTQVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSD 38
>gnl|CDD|130134 TIGR01062, parC_Gneg, DNA topoisomerase IV, A subunit,
proteobacterial. Operationally, topoisomerase IV is a
type II topoisomerase required for the decatenation of
chromosome segregation. Not every bacterium has both a
topo II and a topo IV. The topo IV families of the
Gram-positive bacteria and the Gram-negative bacteria
appear not to represent a single clade among the type II
topoisomerases, and are represented by separate models
for this reason.
Length = 735
Score = 28.0 bits (62), Expect = 3.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Query: 171 RVTIVHRRSSLRSEKILQEKLFLQS-NIDFLFDTEVVDVIGSIPEP 215
R V RR + R K+LQ L+ I FL EV+++I EP
Sbjct: 350 RRNTVIRRLTYRLNKVLQRLHILEGLRIAFLNIDEVIEIIREEDEP 395
>gnl|CDD|162991 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis.
Length = 502
Score = 27.6 bits (62), Expect = 3.9
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 149 VIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
+V+G G A+ LA VT+V +R
Sbjct: 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRD 31
>gnl|CDD|162542 TIGR01812, sdhA_frdA_Gneg, succinate dehydrogenase or fumarate
reductase, flavoprotein
subunitGram-negative/mitochondrial subgroup. This
model represents the succinate dehydrogenase
flavoprotein subunit as found in Gram-negative
bacteria, mitochondria, and some Archaea. Mitochondrial
forms interact with ubiquinone and are designated EC
1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes
in E. coli and other species run primarily in the
opposite direction and are designated fumarate
reductase.
Length = 566
Score = 27.7 bits (62), Expect = 4.1
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 8 ILIIGSGPAGYTAAIYAARAMLKPVIIA 35
++I+G+G AG AA+ AA+A L +I+
Sbjct: 2 VVIVGAGLAGLRAAVEAAKAGLNTAVIS 29
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 27.6 bits (62), Expect = 4.1
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARAMLKPVII---AGSDLGGQ 42
+ D+ ++++G+G AG AA A A + +++ ++LGGQ
Sbjct: 2 AMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQ 44
>gnl|CDD|180788 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 27.7 bits (62), Expect = 4.4
Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 21/79 (26%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAAR-------------------AMLKPVIIAGSDLGG 41
MA+ D I I+G+GP G A + AR + P IA S G
Sbjct: 7 MAAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSH--G 64
Query: 42 QLMITESIENYPGFATSIR 60
++ E++ +P AT I
Sbjct: 65 SRVLLETLGAWPADATPIE 83
>gnl|CDD|179990 PRK05282, PRK05282, (alpha)-aspartyl dipeptidase; Validated.
Length = 233
Score = 27.5 bits (62), Expect = 4.4
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 145 KNKDVIVVGGGNT 157
+N + I VGGGNT
Sbjct: 78 ENAEAIFVGGGNT 90
>gnl|CDD|162952 TIGR02621, cas3_GSU0051, CRISPR-associated helicase Cas3,
Anaes-subtype. This model describes a CRISPR-associated
putative DEAH-box helicase, or Cas3, of a subtype found
in Actinomyces naeslundii MG1, Geobacter sulfurreducens
PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea
psychrophila. This protein includes both DEAH and HD
motifs.
Length = 844
Score = 27.7 bits (61), Expect = 4.5
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 22/88 (25%)
Query: 34 IAGSDLGGQLMITESIENYPGFATSIRGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRH- 92
IA S + + N PGF+ L E+ + DLV+ + H
Sbjct: 743 IARSMYRHEKGSLIDVANAPGFSM------LSEE------------LSDLVLHLVATHHG 784
Query: 93 ---PFLVETQSGDLWHADAVVIATGSEV 117
P E++ DLW DA A GSEV
Sbjct: 785 RNRPHFPESEDFDLWRPDADAKAGGSEV 812
>gnl|CDD|161923 TIGR00551, nadB, L-aspartate oxidase. L-aspartate oxidase is the
B protein, NadB, of the quinolinate synthetase complex.
Quinolinate synthetase makes a precursor of the
pyridine nucleotide portion of NAD. This model
identifies proteins that cluster as L-aspartate oxidase
(a flavoprotein difficult to separate from the set of
closely related flavoprotein subunits of succinate
dehydrogenase and fumarate reductase) by both UPGMA and
neighbor-joining trees. The most distant protein
accepted as an L-aspartate oxidase (NadB), that from
Pyrococcus horikoshii, not only clusters with other
NadB but is just one gene away from NadA.
Length = 488
Score = 27.5 bits (61), Expect = 4.5
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 4 HDSKILIIGSGPAGYTAAIYAARA 27
H +++IGSG AG +AA+ A
Sbjct: 1 HSCDVVVIGSGAAGLSAALALADQ 24
>gnl|CDD|182508 PRK10512, PRK10512, selenocysteinyl-tRNA-specific translation
factor; Provisional.
Length = 614
Score = 27.7 bits (62), Expect = 4.5
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 9/47 (19%)
Query: 60 RGDWLMEQMRQQAENFGTKIIQDLVVSVDLDRHPFLVETQSGDLWHA 106
RGDWL+ E F T++I V+L H L + Q + HA
Sbjct: 252 RGDWLLAD--APPEPF-TRVI------VELQTHTPLTQWQPLHIHHA 289
>gnl|CDD|161779 TIGR00232, tktlase_bact, transketolase, bacterial and yeast. This
model is designed to capture orthologs of bacterial
transketolases. The group includes two from the yeast
Saccharomyces cerevisiae but excludes dihydroxyactetone
synthases (formaldehyde transketolases) from various
yeasts and the even more distant mammalian
transketolases. Among the family of thiamine
diphosphate-dependent enzymes that includes
transketolases, dihydroxyacetone synthases, pyruvate
dehydrogenase E1-beta subunits, and
deoxyxylulose-5-phosphate synthases, mammalian and
bacterial transketolases seem not to be orthologous.
Length = 653
Score = 27.4 bits (61), Expect = 4.7
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Query: 107 DAVVIATGSEVKWLRLESEKKFQGFGVSA 135
D ++IATGSEV L +E+ KK +
Sbjct: 542 DIILIATGSEVS-LAVEAAKKLAAENIKV 569
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 27.3 bits (61), Expect = 5.2
Identities = 8/13 (61%), Positives = 13/13 (100%)
Query: 276 TSIPGIFAAGDVA 288
T++PG++AAGD+A
Sbjct: 367 TTVPGLYAAGDMA 379
Score = 26.9 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARA 27
++ IL+IG G AG AAI A
Sbjct: 7 EVETDILVIGGGTAGPMAAIKAKER 31
>gnl|CDD|179998 PRK05294, carB, carbamoyl phosphate synthase large subunit;
Reviewed.
Length = 1066
Score = 27.4 bits (62), Expect = 5.2
Identities = 9/10 (90%), Positives = 9/10 (90%)
Query: 6 SKILIIGSGP 15
KILIIGSGP
Sbjct: 8 KKILIIGSGP 17
>gnl|CDD|180854 PRK07121, PRK07121, hypothetical protein; Validated.
Length = 492
Score = 27.2 bits (61), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 3 SHDSKILIIGSGPAGYTAAIYAARA 27
++ ++++G G AG AAI AA A
Sbjct: 18 DDEADVVVVGFGAAGACAAIEAAAA 42
>gnl|CDD|178181 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 27.5 bits (61), Expect = 5.5
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Query: 1 MASHDSKILIIGSGPAGYTAA--IYAARAMLK----PVIIAGSDLGGQLMITE 47
M + +I+IIG+G AG TAA +Y + A V+ G +GG++ +E
Sbjct: 1 MVAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE 53
>gnl|CDD|178013 PLN02389, PLN02389, biotin synthase.
Length = 379
Score = 27.1 bits (60), Expect = 5.5
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 189 EKLFLQSNIDFLFDTEVVDVIGSIPEPPLFP 219
+KL N DF D + +G IP+PP F
Sbjct: 330 DKLLTTPNNDFDADQAMFKELGLIPKPPSFG 360
>gnl|CDD|180814 PRK07057, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 591
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 145 KNKDVIVVGGGNTAAEEALHLAKIARRVTIVHRRSSLRSEKI 186
+ DV++VG G + +L LA+ V ++ + RS +
Sbjct: 11 RKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKVFPTRSHTV 52
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 27.3 bits (61), Expect = 6.0
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 148 DVIVVGGGNTAAEEALHLAKIARRVTIVHRRS 179
D+I+VG G A A+ VT++ R S
Sbjct: 2 DLIIVGAGILGLAHAYAAARRGLSVTVIERSS 33
>gnl|CDD|184334 PRK13800, PRK13800, putative oxidoreductase/HEAT repeat-containing
protein; Provisional.
Length = 897
Score = 27.1 bits (60), Expect = 6.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 272 DSTATSIPGIFAAGDVADERYRQAITAAAMGCMAALEVEHYLS 314
+ T++PG++AAGD+A + I A G +A L+
Sbjct: 368 EHARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLA 410
>gnl|CDD|131778 TIGR02731, phytoene_desat, phytoene desaturase. Plants and
cyanobacteria (and, supposedly, Chlorobium tepidum)
have a conserved pathway from two molecules
geranylgeranyl-PP to one of all-trans-lycopene. Members
of this family are the enzyme pytoene desaturase (also
called phytoene dehydrogenase). This model does not
include the region of the chloroplast transit peptide
in plants. A closely related family, excluded by this
model, is zeta-carotene desaturase, another enzyme in
the same pathway.
Length = 453
Score = 27.1 bits (60), Expect = 6.7
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 7 KILIIGSGPAGYTAAIYAARAMLKPVIIAGSD-LGGQL 43
++ I G+G AG + A Y A A P+++ D LGG++
Sbjct: 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKV 38
>gnl|CDD|179093 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 27.1 bits (61), Expect = 7.2
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 7 KILIIGSGPAGYTAAIYAARA 27
+++++GSG G T+A Y A+A
Sbjct: 2 RVVVLGSGVIGVTSAWYLAQA 22
>gnl|CDD|168661 PRK06753, PRK06753, hypothetical protein; Provisional.
Length = 373
Score = 27.0 bits (60), Expect = 7.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Query: 7 KILIIGSGPAGYTAAI 22
KI IIG+G G TAA
Sbjct: 2 KIAIIGAGIGGLTAAA 17
>gnl|CDD|180451 PRK06185, PRK06185, hypothetical protein; Provisional.
Length = 407
Score = 26.7 bits (60), Expect = 8.1
Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 36/106 (33%)
Query: 10 IIGSGPAGYTAAIYAARAMLKPVIIAGSDLGGQLMITESIENYPGFATSIRGD------- 62
I+G GPAG + ARA + V + +E + F RGD
Sbjct: 11 IVGGGPAGMMLGLLLARAGVD-VTV--------------LEKHADFLRDFRGDTVHPSTL 55
Query: 63 WLMEQMR----------QQAENFGTKIIQDLVVSVDLDR----HPF 94
LM+++ Q+ +I V D R +P+
Sbjct: 56 ELMDELGLLERFLELPHQKVRTLRFEIGGRTVTLADFSRLPTPYPY 101
>gnl|CDD|161920 TIGR00545, lipoyltrans, lipoyltransferase and lipoate-protein
ligase. One member of this group of proteins is bovine
lipoyltransferase, which transfers the lipoyl group from
lipoyl-AMP to the specific Lys of lipoate-dependent
enzymes. However, it does not first activate lipoic acid
with ATP to create lipoyl-AMP and pyrophosphate. Another
member of this group, lipoate-protein ligase A from E.
coli, catalyzes both the activation and the transfer of
lipoate. Homology between the two is full-length, except
for the bovine mitochondrial targeting signal, but is
strongest toward the N-terminus.
Length = 324
Score = 26.7 bits (59), Expect = 8.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 142 FFYKNKDVIVVG-GGNTAAEEALHLAKIARRVTIVHRRSS 180
F++N + IV+G NT AE ++L ++ + RR S
Sbjct: 35 LFWQNANTIVIGRNQNTWAE--VNLKELEEDNVNLFRRFS 72
>gnl|CDD|181844 PRK09424, pntA, NAD(P) transhydrogenase subunit alpha; Provisional.
Length = 509
Score = 26.7 bits (60), Expect = 8.4
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 7 KILIIGSGPAGYTAAIYAARAM 28
K+L+IG+G AG AAI AA ++
Sbjct: 167 KVLVIGAGVAGL-AAIGAAGSL 187
>gnl|CDD|181412 PRK08401, PRK08401, L-aspartate oxidase; Provisional.
Length = 466
Score = 26.7 bits (59), Expect = 8.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 5 DSKILIIGSGPAGYTAAIYAAR 26
K+ I+G G AG TAAI A+
Sbjct: 1 MMKVGIVGGGLAGLTAAISLAK 22
>gnl|CDD|180667 PRK06718, PRK06718, precorrin-2 dehydrogenase; Reviewed.
Length = 202
Score = 26.5 bits (59), Expect = 8.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 146 NKDVIVVGGGNTAAEEALHLAKIARRVTIV 175
NK V++VGGG A A+ L K + ++
Sbjct: 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVI 39
>gnl|CDD|129757 TIGR00674, dapA, dihydrodipicolinate synthase. Dihydrodipicolinate
synthase is a homotetrameric enzyme of lysine
biosynthesis. E. coli has several paralogs closely
related to dihydrodipicoline synthase (DapA), as well as
the more distant N-acetylneuraminate lyase. In
Pyrococcus horikoshii, the bidirectional best hit with
E. coli is to an uncharacterized paralog of DapA, not
DapA itself, and it is omitted from the seed. The
putative members from the Chlamydias (pathogens with a
parasitic metabolism) are easily the most divergent
members of the multiple alignment.
Length = 285
Score = 26.5 bits (59), Expect = 8.9
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 150 IVVGGGNTAAEEALHLAKIARRVTI 174
++ G G+ A EEA+ L K A V
Sbjct: 70 VIAGTGSNATEEAISLTKFAEDVGA 94
>gnl|CDD|180227 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 26.7 bits (60), Expect = 8.9
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 148 DVIVVGGGNTAAEEAL---HLAKIARRVTIV 175
DVI+VGGG A AL L+ V ++
Sbjct: 5 DVIIVGGGMAGATLALALSRLSHGGLPVALI 35
>gnl|CDD|181243 PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.
Length = 547
Score = 26.4 bits (59), Expect = 9.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 7 KILIIGSGPAGYTAAIYAAR 26
++++G+GP G AI A+
Sbjct: 25 PVVVVGAGPVGLALAIDLAQ 44
>gnl|CDD|180309 PRK05899, PRK05899, transketolase; Reviewed.
Length = 624
Score = 26.7 bits (60), Expect = 9.3
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 106 ADAVVIATGSEVKWLRLESEKKFQGFGVSA 135
D ++IATGSEV L LE+ + + G+
Sbjct: 511 PDVILIATGSEV-HLALEAADELEAEGIKV 539
>gnl|CDD|181262 PRK08163, PRK08163, salicylate hydroxylase; Provisional.
Length = 396
Score = 26.5 bits (59), Expect = 9.3
Identities = 10/31 (32%), Positives = 15/31 (48%)
Query: 84 VVSVDLDRHPFLVETQSGDLWHADAVVIATG 114
VV ++ D V Q G+ W DA++ G
Sbjct: 133 VVGIEQDGDGVTVFDQQGNRWTGDALIGCDG 163
>gnl|CDD|168408 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 26.5 bits (59), Expect = 9.6
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAAR 26
+ ++ +LI+G GP G A+ R
Sbjct: 3 ENTSETPVLIVGGGPVGLALALDLGR 28
>gnl|CDD|181507 PRK08626, PRK08626, fumarate reductase flavoprotein subunit;
Provisional.
Length = 657
Score = 26.5 bits (59), Expect = 9.8
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 1 MASHDSKILIIGSGPAGYTAAIYAARAMLKPVII 34
M + L+IG+G AG AI AA+ L +++
Sbjct: 1 MKIIYTDALVIGAGLAGLRVAIAAAQRGLDTIVL 34
Database: CddB
Posted date: Feb 4, 2011 9:54 PM
Number of letters in database: 5,994,473
Number of sequences in database: 21,608
Lambda K H
0.320 0.135 0.397
Gapped
Lambda K H
0.267 0.0615 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 5,351,659
Number of extensions: 348583
Number of successful extensions: 1419
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1333
Number of HSP's successfully gapped: 251
Length of query: 321
Length of database: 5,994,473
Length adjustment: 93
Effective length of query: 228
Effective length of database: 3,984,929
Effective search space: 908563812
Effective search space used: 908563812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.0 bits)