BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] (623 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780284|ref|YP_003064697.1| hypothetical protein CLIBASIA_00845 [Candidatus Liberibacter asiaticus str. psy62] Length = 623 Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust. Identities = 623/623 (100%), Positives = 623/623 (100%) Query: 1 MKNEKEFLDKRDASFRIGQFPSSIPSLDSSIKDYSRQLTNIFLKDKVFFDGLEQELLASL 60 MKNEKEFLDKRDASFRIGQFPSSIPSLDSSIKDYSRQLTNIFLKDKVFFDGLEQELLASL Sbjct: 1 MKNEKEFLDKRDASFRIGQFPSSIPSLDSSIKDYSRQLTNIFLKDKVFFDGLEQELLASL 60 Query: 61 GSMGQEKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEK 120 GSMGQEKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEK Sbjct: 61 GSMGQEKFVSYARKKRSQRSPEDQLPSSKHLSPRFGSAHENFFDCDLENKPFPVETVVEK 120 Query: 121 KENVDKSLQSKPSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQ 180 KENVDKSLQSKPSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQ Sbjct: 121 KENVDKSLQSKPSTDLLVQATSFLKESVIDYPDCDSEIMRGLDDDLDRCFEKKDRTSAIQ 180 Query: 181 LDKTEEILKGELTDKTDSSFSDSMAKYGTGMSSALEGKKENIFLADDQGISLKSKEDMLT 240 LDKTEEILKGELTDKTDSSFSDSMAKYGTGMSSALEGKKENIFLADDQGISLKSKEDMLT Sbjct: 181 LDKTEEILKGELTDKTDSSFSDSMAKYGTGMSSALEGKKENIFLADDQGISLKSKEDMLT 240 Query: 241 LDIQSLEKSPVDDCGISLTESPKKRLGSHSAIDDDLGLDFGDIEKELLSISGCANRESDS 300 LDIQSLEKSPVDDCGISLTESPKKRLGSHSAIDDDLGLDFGDIEKELLSISGCANRESDS Sbjct: 241 LDIQSLEKSPVDDCGISLTESPKKRLGSHSAIDDDLGLDFGDIEKELLSISGCANRESDS 300 Query: 301 RDQEKKSSDIEKSESQGPVFDLKKIVRFEEYPKDMDELVISSLLVDEEKLSLEKVNHSLE 360 RDQEKKSSDIEKSESQGPVFDLKKIVRFEEYPKDMDELVISSLLVDEEKLSLEKVNHSLE Sbjct: 301 RDQEKKSSDIEKSESQGPVFDLKKIVRFEEYPKDMDELVISSLLVDEEKLSLEKVNHSLE 360 Query: 361 QDIATLSFEEGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFSAPEISVDGFHEGS 420 QDIATLSFEEGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFSAPEISVDGFHEGS Sbjct: 361 QDIATLSFEEGGKKYLFNSNTEGIARGISINRDCSLGDDVHRENMFSAPEISVDGFHEGS 420 Query: 421 SLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKD 480 SLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKD Sbjct: 421 SLVSPALKSNSKRDVAQNRKFWLIGYILIVVGCGIYWFFQLHREISFANEKPLIVNAIKD 480 Query: 481 PMKVIPSSSEEENDTSFNQVHEVYDRFSGEKPSSPKQKTLLNLQEKPIDFPVQNQETSHY 540 PMKVIPSSSEEENDTSFNQVHEVYDRFSGEKPSSPKQKTLLNLQEKPIDFPVQNQETSHY Sbjct: 481 PMKVIPSSSEEENDTSFNQVHEVYDRFSGEKPSSPKQKTLLNLQEKPIDFPVQNQETSHY 540 Query: 541 KSPSIIENSIRDIQAVSQVSVAENEDRSRSESIIVEKEIPQLSQQSSFLMDNKENFQGVD 600 KSPSIIENSIRDIQAVSQVSVAENEDRSRSESIIVEKEIPQLSQQSSFLMDNKENFQGVD Sbjct: 541 KSPSIIENSIRDIQAVSQVSVAENEDRSRSESIIVEKEIPQLSQQSSFLMDNKENFQGVD 600 Query: 601 SLQINLSKLKGNIPVPRSYSNRS 623 SLQINLSKLKGNIPVPRSYSNRS Sbjct: 601 SLQINLSKLKGNIPVPRSYSNRS 623 >gi|254781148|ref|YP_003065561.1| hypothetical protein CLIBASIA_05275 [Candidatus Liberibacter asiaticus str. psy62] Length = 69 Score = 26.2 bits (56), Expect = 1.7, Method: Compositional matrix adjust. Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 5/33 (15%) Query: 28 DSSIKDYSRQLTNIFLKDKVFFDGLEQELLASL 60 D S K YSR +I+ +F GLEQE+L SL Sbjct: 4 DFSKKYYSRNNNSIY-----YFIGLEQEILGSL 31 >gi|254781090|ref|YP_003065503.1| hypothetical protein CLIBASIA_04960 [Candidatus Liberibacter asiaticus str. psy62] Length = 71 Score = 24.6 bits (52), Expect = 5.5, Method: Compositional matrix adjust. Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 144 LKESVIDYPDCDSEIMRGLDDDL 166 L + + DYPDCD E+ + DD+ Sbjct: 48 LADFIKDYPDCDLELENLVTDDI 70 >gi|254780274|ref|YP_003064687.1| lysophospholipase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 317 Score = 24.3 bits (51), Expect = 5.8, Method: Compositional matrix adjust. Identities = 15/75 (20%), Positives = 35/75 (46%), Gaps = 6/75 (8%) Query: 23 SIPSLDSSIKDYSRQLTNIFLKDKVFFDG------LEQELLASLGSMGQEKFVSYARKKR 76 ++ +LD + YS L + LK + FF G L + L L + + + ++ + Sbjct: 133 ALWNLDLCFEKYSCMLMTLLLKIEKFFKGSDTPSRLMRHLTTDLWNRNNQNWKNFLKDHS 192 Query: 77 SQRSPEDQLPSSKHL 91 +++ ++ + S H+ Sbjct: 193 VKKNSQNYILDSNHI 207 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.311 0.131 0.358 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 404,822 Number of Sequences: 1233 Number of extensions: 17954 Number of successful extensions: 64 Number of sequences better than 100.0: 14 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 7 Number of HSP's that attempted gapping in prelim test: 54 Number of HSP's gapped (non-prelim): 18 length of query: 623 length of database: 328,796 effective HSP length: 79 effective length of query: 544 effective length of database: 231,389 effective search space: 125875616 effective search space used: 125875616 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 41 (20.4 bits)