HHsearch alignment for GI: 254780285 and conserved domain: COG0018
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=100.00 E-value=0 Score=1078.13 Aligned_cols=540 Identities=37% Similarity=0.582 Sum_probs=466.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
T Consensus 1 m~i~~~l~~~i~~~l~~~~-----~~~~~~~~~ve~~~~~~~GD~a~n~a~~laK~~~~~P~eiA~~i~~~l~~~~~~~~ 75 (577)
T COG0018 1 MNIKQLLKEKIAEALSAAG-----LDVEEIEILVEPPKDPEHGDFATNIAFQLAKKLGKNPREIAEEIAEKLDTDEIIEK 75 (577)
T ss_pred CCHHHHHHHHHHHHHHHHH-----CCCCCCCCCEECCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 9778999999999999730-----44455653001599987666333588997543499989999999986045576768
Q ss_pred EEEECCCEEEEEECHHHHHHHHHHHHHC-CHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8854797687888888999999999856-221388765655410002234432244117777785689999999985066
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRKILSSIVVS-GIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGY 159 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~~l~~i~~~-~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~ 159 (586)
T Consensus 76 veiaGpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaNptkplHiGHlR~aiiGDsLaril~~~Gy 155 (577)
T COG0018 76 VEIAGPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSANPTGPLHIGHLRNAIIGDSLARILEFLGY 155 (577)
T ss_pred EEECCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 99727977889978899999999999733355674436899879998747999998523323536889999999998399
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHH-------HHHHCC--CCHHHH
Q ss_conf 64102014775314555678987532221024500066011024100001278888875-------764134--302379
Q gi|254780285|r 160 EVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYS-------SELLNF--PEEKWL 230 (586)
Q Consensus 160 ~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~-------~~~~~~--~e~~~~ 230 (586)
T Consensus 156 ~V~r~~yvnD~G~Q~~~l~~~~~~~~~e~~~---~~~~~~~~lg~~y~~i~~~~~~~~~~~~~~~~~~~~k~e~~d~~~- 231 (577)
T COG0018 156 DVTRENYVNDWGTQIGMLALSYEKRGREALG---LTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEA- 231 (577)
T ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCCCC---CCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHH-
T ss_conf 7667866785799999999999995541013---777720688999999999997484612678899999886477578-
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99999978998875455588708752100015887301045799999999974985113426755565420002478156
Q gi|254780285|r 231 PIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLL 310 (586)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~ 310 (586)
T Consensus 232 -~lw~~~v~~~l~~~k~~l~~l~V~fD~~~~E~e~~~--~~~~~~vv~~L~~~~~~~e----------------~~GA~~ 292 (577)
T COG0018 232 -ELWRKFVDLSLEGIKETLDRLGVKFDVYDSEGESFY--NGKVEKVVEDLEEKGLLYE----------------DDGALV 292 (577)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHH--CCCHHHHHHHHHHCCCEEE----------------ECCEEE
T ss_conf -999999999999999999992953001323426552--6649999999986697760----------------099589
Q ss_pred EEHH---HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC--CEEEE
Q ss_conf 5101---102222222102465213568889999997522555433367776136899999999972266345--11531
Q gi|254780285|r 311 FRST---MVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ--INVLL 385 (586)
Q Consensus 311 ~~~~---~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~--~~~~~ 385 (586)
T Consensus 293 vdl~~~~~~gd~~~~vl~KSDGt~lY~t~DIAy~~~K~~~~~d~~IyV~gadq~~~~~ql~~~l~~~g~~~~~~~~~h~~ 372 (577)
T COG0018 293 VDLLKFKKFGDDKDRVLQKSDGTYLYFTRDIAYHLYKFERGFDKLIYVLGADQHGHFKQLKAVLELLGYGPDKEVLLHQG 372 (577)
T ss_pred EEHHHHHHCCCCCCEEEEECCCCEEEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 86432111168777289976997054253899999997369988999967862449999999999846998656189997
Q ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHH----------------------HHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 101101221100000122330245677777632----------------------1123455542000123334477765
Q gi|254780285|r 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDEVG----------------------SDSVRFMMLWRKNSELLDFDFCKVK 443 (586)
Q Consensus 386 ~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg----------------------~~aiky~~L~~~~~~~~~Fd~d~~l 443 (586)
T Consensus 373 ~~l~---~~~~g~kmStR~G~~vtl~dllde~~era~~~~~~~~~~~~~iA~~vgi~Avry~~l~~~~~~~~~Fd~d~~l 449 (577)
T COG0018 373 VGLV---RGGEGVKMSTRAGNVVTLDDLLDEAGERAPEEMEEKEEKNEEIAEVVGIDAVRYADLSRSRDKDYVFDWDKAL 449 (577)
T ss_pred EEEE---ECCCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHH
T ss_conf 7525---7787763422488657899999999887666765432115777777524067899886289999475399997
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 32024436788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 444 EQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 444 ~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
T Consensus 450 sf-egNt~pYvQYA~ARi~SIlrka~e~~~~~~~------~~~-~~l~~~~E~~L~~~L~~fp~vl~~aa~~~~Ph~la~ 521 (577)
T COG0018 450 SF-EGNTAPYVQYAHARICSILRKAGEDELDLST------EAD-ALLTELEERELVKKLLEFPEVLEEAAEELEPHRLAN 521 (577)
T ss_pred HC-CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCC------CCC-HHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 44-5997215999999999999854443455332------221-010682799999999984999999998569559999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 524 YLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
T Consensus 522 YL~~LA~~Fn~fY~~~------~Vl~~~~~~~~~aRL~L~~a~~~vL~ngL~LLGI~~~e~M 577 (577)
T COG0018 522 YLYDLAGSFNSFYNAC------PVLGAENEELRAARLALVKATRQVLKNGLDLLGIEAPERM 577 (577)
T ss_pred HHHHHHHHHHHHHHHC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999999999998508------7778995789999999999999999977876099975569