HHsearch alignment for GI: 254780285 and conserved domain: COG0060
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=98.84 E-value=1.4e-07 Score=72.22 Aligned_cols=224 Identities=21% Similarity=0.232 Sum_probs=138.7
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCC---CCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCC
Q ss_conf 52135688899999975225554---3336777613-6899999999972266345115311011012211000001223
Q gi|254780285|r 329 GSYTYFAADLAYFKCKYERGFDN---MIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRA 404 (586)
Q Consensus 329 Gt~~Y~t~DiA~~~~k~e~~~d~---~iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~ 404 (586)
T Consensus 536 Gs~~~a~~~-~~~----~~~~~~~~aD~~lEGsDQ~RGWF~Ssl~~s~a~~~~aPYk~vltHGfv-lDe~Gr--KMSKSl 607 (933)
T COG0060 536 GSTPYAVLH-PRE----NLKFPALFADFYLEGSDQTRGWFYSSLLTSTALFGRAPYKNVLTHGFV-LDEKGR--KMSKSL 607 (933)
T ss_pred CCCCCCCCC-CCC----CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCE-ECCCCC--CCCCCC
T ss_conf 897111107-754----446765557579970665522689999999997288507877632617-888888--765557
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 30245677777632112345554200012333447776532024436788888888999987533200246832234223
Q gi|254780285|r 405 GDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNV 484 (586)
Q Consensus 405 G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~ 484 (586)
T Consensus 608 GN~v~P~~V~~~yGADiLRLwv~ssd~~~dl~~s~~i-l~~~~~--------~~r~irNt~rF~l~nl~~fdp~~~---~ 675 (933)
T COG0060 608 GNVVDPQDVIDKYGADILRLWVASSDYWEDLRFSDEI-LKQVRE--------VYRKIRNTYRFLLGNLDDFDPKKD---A 675 (933)
T ss_pred CCCCCHHHHHHHHCCHHEEEEEEECCCHHCCCCCHHH-HHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCC---C
T ss_conf 8818989998762763404665615823032027889-999999--------999999999999885058994213---3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 552114998999999998421899999998528127999999999-9889998706866666543578789999999999
Q gi|254780285|r 485 IPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA-SVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLV 563 (586)
Q Consensus 485 ~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~ 563 (586)
T Consensus 676 ~~-~~~~~~~Drwil~rl~~l~~~v~eaye~y~f~~v~~~l~~F~~~dLS~~Yld~-~kdr~y~~~~~s~~----rraa~ 749 (933)
T COG0060 676 VL-PEELRELDRWILSRLNSLVKEVREAYENYDFHKVVRALMNFVSEDLSNWYLDI-IKDRLYTEAADSPD----RRAAQ 749 (933)
T ss_pred CC-HHHCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCHH----HHHHH
T ss_conf 51-44423217999999999999999999846799999999999885665889888-78876404799988----99999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999873158
Q gi|254780285|r 564 HAVASIINSGLNIIG 578 (586)
Q Consensus 564 ~a~~~vL~~~L~LLG 578 (586)
T Consensus 750 ~~Ly~il~~l~~~lA 764 (933)
T COG0060 750 TTLYHILKALVRLLA 764 (933)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999971