HHsearch alignment for GI: 254780285 and conserved domain: COG0143
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.62 E-value=1.1e-11 Score=100.91 Aligned_cols=351 Identities=19% Similarity=0.224 Sum_probs=200.9
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
T Consensus 4 ~~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~G~~v~fvtGtDeHGt~I~~~A~~------~g~---------- 67 (558)
T COG0143 4 MKKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLRGYEVFFLTGTDEHGTKIELKAEK------EGI---------- 67 (558)
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHH------CCC----------
T ss_conf 8738995589889998641367888789999999982697589995147877788999998------599----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
T Consensus 68 ---------tP~el~------------------------d~~~~~~~~~~~~l~IsfD~F~rTt~~~--h~~~vq~~f~~ 112 (558)
T COG0143 68 ---------TPQELV------------------------DKNHEEFKELFKALNISFDNFIRTTSPE--HKELVQEFFLK 112 (558)
T ss_pred ---------CHHHHH------------------------HHHHHHHHHHHHHHCCCCCEECCCCCHH--HHHHHHHHHHH
T ss_conf ---------989999------------------------9999999999998098543001689777--99999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCC----------------------------------------CCC--------CCCEEE
Q ss_conf 99749851134267555654200----------------------------------------024--------781565
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQKC----------------------------------------DMD--------RKQLLF 311 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~~----------------------------------------~~~--------~~~~~~ 311 (586)
T Consensus 113 L~~~G~I~~~~~~~~Yc~~~e~fl~dr~v~g~cp~cg~~~a~GD~Ce~Cg~~~~P~~l~~p~~~i~g~~p~~r~~~hyFf 192 (558)
T COG0143 113 LYENGDIYLREYEGLYCVSCERFLPDRYVEGTCPKCGGEDARGDQCENCGRTLDPTELINPVCVISGATPEVREEEHYFF 192 (558)
T ss_pred HHHCCCEECCCEEEEECCCCCCCCCCHHEECCCCCCCCCCCCCCHHHHCCCCCCCHHCCCCEEEEECCCCCCCCCEEEEE
T ss_conf 99789873144356473543564562102055898675345764343226757921217981686479764335405998
Q ss_pred EHHHCCCCCCCCCCCCCC---CHHHHH-----------HHHHHHH----HHHH--CCCCCCCCCCCCCHHHHHHHHHHH-
Q ss_conf 101102222222102465---213568-----------8899999----9752--255543336777613689999999-
Q gi|254780285|r 312 RSTMVGDDVDRPLLKSDG---SYTYFA-----------ADLAYFK----CKYE--RGFDNMIYVMGSDHSGYVKRLEAV- 370 (586)
Q Consensus 312 ~~~~~g~~~d~vl~rsDG---t~~Y~t-----------~DiA~~~----~k~e--~~~d~~iyVv~~~Q~~h~~~v~~~- 370 (586)
T Consensus 193 ~L~~~~~~L-~~~~~~~~~~~~p~~~~ne~~~~i~~GL~d~~IsR~~~~WGipvP~~p~kv~YVWfDAligYisa~~~~~ 271 (558)
T COG0143 193 RLSKFQDKL-LEWYESNPDFIWPANRRNEVLNFLKEGLKDLSITRTDLDWGIPVPGDPGKVIYVWFDALIGYISALGELA 271 (558)
T ss_pred EHHHHHHHH-HHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHCCHH
T ss_conf 879869999-9999739654588689999999997668664314589887725799998779996344889999954121
Q ss_pred --------------------------------------HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf --------------------------------------997226634511531101101221100000122330245677
Q gi|254780285|r 371 --------------------------------------AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 371 --------------------------------------~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
T Consensus 272 ~~~~~~~~~~~W~~~~~e~vhfIGKDii~FHav~wPamL~~~~~~lP~-~i~ahg~l~~--~G~--KmSKSrG~~V~~~~ 346 (558)
T COG0143 272 EIGDDEDFKKFWPADDTELVHFIGKDIIRFHAVYWPAMLMAAGLPLPT-RIFAHGFLTL--EGQ--KMSKSRGNVVDPDE 346 (558)
T ss_pred CCCCHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCCC-EEEEEEEEEE--CCC--CCCCCCCCEEEHHH
T ss_conf 058767898637788845999962456743245789999738999887-7984013997--794--12442881871799
Q ss_pred HHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 7776321123455542000-12333447776532024436788888888999987533-200246832234223552114
Q gi|254780285|r 413 VVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAK-DIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 413 ll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~-~~~~~~~~~~~~~~~~~~~~~ 490 (586)
T Consensus 347 ~~~~~~~D~lRYyL~~~~p~~~D~dFs~~~f~~rvN~dL~n~lgNl~~R~l~fi~k~~~g~vp~--------~~-~--~~ 415 (558)
T COG0143 347 LLEQYGVDALRYYLARELPEGSDGDFSWEDFVERVNADLANKLGNLANRTLGFINKYFDGVVPA--------AG-A--PD 415 (558)
T ss_pred HHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC--------CC-C--CC
T ss_conf 9987482385798887377888888899999999989988788899999999997525996886--------54-5--55
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9989999999984218999999985281279999999999889998706
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
T Consensus 416 ~-~~d~~~~~~~~~~~~~~~~~~e~~~~~~Al~~i~~l~~~~N~Yi~~~ 463 (558)
T COG0143 416 L-EEDEELLALAREALEAVAEAMEKYEFRKALEEIMALASRANKYIDEQ 463 (558)
T ss_pred C-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 3-45699999999999999999986259999999999999998876428