HHsearch alignment for GI: 254780285 and conserved domain: COG0180
>COG0180 TrpS Tryptophanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=93.84 E-value=0.42 Score=26.68 Aligned_cols=107 Identities=17% Similarity=0.101 Sum_probs=60.1
Q ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHC------CCCCCC-EEEECCHHHCCCCCCCCCC
Q ss_conf 652135688899999975225554333677761368999999999722------663451-1531101101221100000
Q gi|254780285|r 328 DGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVS------EKKAQI-NVLLCELVRLYRDGMPIKM 400 (586)
Q Consensus 328 DGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg------~~~~~~-~~~~~~~v~l~~dg~~~km 400 (586)
T Consensus 128 ~Gl~~YPvlqAADILl-----~~a~~VPVG~DQ~qHleLtRDiA~rfn~~y~~~f~~P~~~~~~~-~~i~gL-~g~-~KM 199 (314)
T COG0180 128 IGLLTYPVLQAADILL-----YQATLVPVGEDQDQHLELTRDIARRFNHLYGEVFPLPEALISKV-ARLPGL-DGP-GKM 199 (314)
T ss_pred CCCHHCCHHHHHHHHH-----CCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCC-CCC-CCC
T ss_conf 1021054998887650-----26875104888539999999999998744667537860014477-746478-999-866
Q ss_pred CCCCCC-HHHHHHHHHHH----------HHHHHHHHHHHHCCHHHHHHHHHHHH
Q ss_conf 122330-24567777763----------21123455542000123334477765
Q gi|254780285|r 401 SKRAGD-FITLRHVVDEV----------GSDSVRFMMLWRKNSELLDFDFCKVK 443 (586)
Q Consensus 401 stR~G~-~v~l~dll~ev----------g~~aiky~~L~~~~~~~~~Fd~d~~l 443 (586)
T Consensus 200 SkS~~ns~I~L~D~~~~i~kKI~~~~td~~~~~~~~~-~g~Pe~~~l~~~~~~~ 252 (314)
T COG0180 200 SKSDPNSAIFLLDDPKTIRKKIKKAATDGPTLIEYRK-GGKPEVCNLFEIYSAF 252 (314)
T ss_pred CCCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCCC-CCCCCCCHHHHHHHHH
T ss_conf 6669998245049989999999985269987502589-9999856499999986