HHsearch alignment for GI: 254780285 and conserved domain: COG0215

>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.17  E-value=1.6e-08  Score=78.77  Aligned_cols=262  Identities=23%  Similarity=0.344  Sum_probs=145.7

Q ss_pred             CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r  119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE  198 (586)
Q Consensus       119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e  198 (586)
T Consensus        19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~---yV-------------------~NiTDI------   70 (464)
T COG0215          19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVT---YV-------------------RNITDI------   70 (464)
T ss_pred             CCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEE---EE-------------------ECCCCC------
T ss_conf             99916899618825776445667652029999999998297079---99-------------------646666------


Q ss_pred             HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHH
Q ss_conf             110241000012788888757641343023799999997899887545558870875-2100015887301045799999
Q gi|254780285|r  199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDII  277 (586)
Q Consensus       199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i  277 (586)
T Consensus        71 -----------DDKIi~rA~~~g~------~---~~ev-~~~~i~~f~~D~~aL~v~~p~~~PraTe~I----~~iI~~I  125 (464)
T COG0215          71 -----------DDKIINRAREEGL------S---IREV-AERYIAAFFEDMDALNVLPPDIEPRATEHI----DEIIEFI  125 (464)
T ss_pred             -----------CHHHHHHHHHHCC------C---HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHCH----HHHHHHH
T ss_conf             -----------3899999998299------9---9999-999999999999982999986557476479----9999999


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CCCCCC-------CCCCCCCCHHHHHHHH-HHHHHHHH
Q ss_conf             999974985113426755565420002478156510110---222222-------2102465213568889-99999752
Q gi|254780285|r  278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GDDVDR-------PLLKSDGSYTYFAADL-AYFKCKYE  346 (586)
Q Consensus       278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~d~-------vl~rsDGt~~Y~t~Di-A~~~~k~e  346 (586)
T Consensus       126 ~~Li~kG~AY~~~---------------~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~--Krnp~DFvLWK~s  188 (464)
T COG0215         126 EKLIEKGYAYVAD---------------DGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEE--KRNPLDFVLWKAA  188 (464)
T ss_pred             HHHHHCCCEEEEC---------------CCCEEEECCCHHHHHHHCCCCCHHHHHHCCCCCCCCC--CCCCHHHEEECCC
T ss_conf             9999779658846---------------9828995243031786528987667751354566545--5880011244258


Q ss_pred             CC---------------------------CCCCCCCCCCC-------HHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHC
Q ss_conf             25---------------------------55433367776-------136899999999972266-34511531101101
Q gi|254780285|r  347 RG---------------------------FDNMIYVMGSD-------HSGYVKRLEAVAAAVSEK-KAQINVLLCELVRL  391 (586)
Q Consensus       347 ~~---------------------------~d~~iyVv~~~-------Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l  391 (586)
T Consensus       189 k~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea---~~g~~~~a~-yWmH~G~l~i  264 (464)
T COG0215         189 KPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEA---ATGVKPFAK-YWMHNGFLNI  264 (464)
T ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHH---HHCCCCCEE-EEEECCEEEE
T ss_conf             999988779988999944688999999870897512468502558886308999876---429976005-8688264524


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf             221100000122330245677777632112345554200012333447776532024436788888888
Q gi|254780285|r  392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYAR  460 (586)
Q Consensus       392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR  460 (586)
T Consensus       265 --~ge--KMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~-A~-~~l~rl~~~~~~  327 (464)
T COG0215         265 --DGE--KMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEE-AK-KALERLYNALRR  327 (464)
T ss_pred             --CCC--CCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH-HH-HHHHHHHHHHHH
T ss_conf             --672--7652357766799998654879999999987757765668999999-99-999999999998