HHsearch alignment for GI: 254780285 and conserved domain: COG0215
>COG0215 CysS Cysteinyl-tRNA synthetase [Translation, ribosomal structure and biogenesis].
Probab=99.17 E-value=1.6e-08 Score=78.77 Aligned_cols=262 Identities=23% Similarity=0.344 Sum_probs=145.7
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
T Consensus 19 ~~~~V~mYvCGpTVYd~~HIGhaRt~V~fDvl~R~L~~~Gy~V~---yV-------------------~NiTDI------ 70 (464)
T COG0215 19 DPGKVKMYVCGPTVYDYAHIGHARTYVVFDVLRRYLRYLGYKVT---YV-------------------RNITDI------ 70 (464)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCEEHHHHHHHHHHHHCCEEE---EE-------------------ECCCCC------
T ss_conf 99916899618825776445667652029999999998297079---99-------------------646666------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHH
Q ss_conf 110241000012788888757641343023799999997899887545558870875-2100015887301045799999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i 277 (586)
T Consensus 71 -----------DDKIi~rA~~~g~------~---~~ev-~~~~i~~f~~D~~aL~v~~p~~~PraTe~I----~~iI~~I 125 (464)
T COG0215 71 -----------DDKIINRAREEGL------S---IREV-AERYIAAFFEDMDALNVLPPDIEPRATEHI----DEIIEFI 125 (464)
T ss_pred -----------CHHHHHHHHHHCC------C---HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCHHHCH----HHHHHHH
T ss_conf -----------3899999998299------9---9999-999999999999982999986557476479----9999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CCCCCC-------CCCCCCCCHHHHHHHH-HHHHHHHH
Q ss_conf 999974985113426755565420002478156510110---222222-------2102465213568889-99999752
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GDDVDR-------PLLKSDGSYTYFAADL-AYFKCKYE 346 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~d~-------vl~rsDGt~~Y~t~Di-A~~~~k~e 346 (586)
T Consensus 126 ~~Li~kG~AY~~~---------------~G~VYFdv~~f~~YG~LS~~~~le~l~~gar~~~~~~--Krnp~DFvLWK~s 188 (464)
T COG0215 126 EKLIEKGYAYVAD---------------DGDVYFDVSKFKDYGKLSGRDSLEELQAGARVEVDEE--KRNPLDFVLWKAA 188 (464)
T ss_pred HHHHHCCCEEEEC---------------CCCEEEECCCHHHHHHHCCCCCHHHHHHCCCCCCCCC--CCCCHHHEEECCC
T ss_conf 9999779658846---------------9828995243031786528987667751354566545--5880011244258
Q ss_pred CC---------------------------CCCCCCCCCCC-------HHHHHHHHHHHHHHHCCC-CCCCEEEECCHHHC
Q ss_conf 25---------------------------55433367776-------136899999999972266-34511531101101
Q gi|254780285|r 347 RG---------------------------FDNMIYVMGSD-------HSGYVKRLEAVAAAVSEK-KAQINVLLCELVRL 391 (586)
Q Consensus 347 ~~---------------------------~d~~iyVv~~~-------Q~~h~~~v~~~~~~lg~~-~~~~~~~~~~~v~l 391 (586)
T Consensus 189 k~gEp~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIHgGG~DLiFPHHENEiAQsea---~~g~~~~a~-yWmH~G~l~i 264 (464)
T COG0215 189 KPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEA---ATGVKPFAK-YWMHNGFLNI 264 (464)
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCEECCCCCCCCCCCCCHHHHHHH---HHCCCCCEE-EEEECCEEEE
T ss_conf 999988779988999944688999999870897512468502558886308999876---429976005-8688264524
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 221100000122330245677777632112345554200012333447776532024436788888888
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYAR 460 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR 460 (586)
T Consensus 265 --~ge--KMSKSLGNfiti~d~l~~~~p~~lR~~lls~HYR~pl~fsee~L~~-A~-~~l~rl~~~~~~ 327 (464)
T COG0215 265 --DGE--KMSKSLGNFITVRDLLKKYDPEVLRLFLLSSHYRSPLDFSEELLEE-AK-KALERLYNALRR 327 (464)
T ss_pred --CCC--CCCCCCCCEEEHHHHHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHH-HH-HHHHHHHHHHHH
T ss_conf --672--7652357766799998654879999999987757765668999999-99-999999999998