HHsearch alignment for GI: 254780285 and conserved domain: COG1384
>COG1384 LysS Lysyl-tRNA synthetase (class I) [Translation, ribosomal structure and biogenesis].
Probab=98.79 E-value=8.4e-08 Score=73.70 Aligned_cols=273 Identities=18% Similarity=0.294 Sum_probs=144.5
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 41000223443224411777778568999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
T Consensus 19 ~~~~v~-tGisPSG~~HIGn~rEv~t~d~V~ralr~~g~~~r~I~~~DD~D~----------------lRkvp~~lp~-- 79 (521)
T COG1384 19 DEYVVA-TGISPSGLIHIGNFREVLTADAVRRALRDRGDEVRLIYISDDYDP----------------LRKVPRNLPD-- 79 (521)
T ss_pred CCEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC----------------CCCCCCCCCC--
T ss_conf 868983-476898873214289898999999999974886579998148751----------------0127999998--
Q ss_pred CCCCCHHHHHHHHHHHHHH-HHHCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHH-CCH-------
Q ss_conf 0241000012788888757-6413430-23799999997899887545558870875210001588730-104-------
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSS-ELLNFPE-EKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHR-GDP------- 270 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~-~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~-~~~------- 270 (586)
T Consensus 80 ----------~~~~e~Ylg~Plt~IPdP~G~~~---Sy-a~hf~~~f~~~l~~~Gi~~E~~s~-se~Yk~G~~~~~i~~a 144 (521)
T COG1384 80 ----------PEELEQYLGMPLTEIPDPFGCCD---SY-AEHFLRPFEEFLDEFGIEVEFVSA-TELYKSGLYDEAIRIA 144 (521)
T ss_pred ----------HHHHHHHCCCCCCCCCCCCCCCC---HH-HHHHHHHHHHHHHHCCCCEEEEEH-HHHHHCCCHHHHHHHH
T ss_conf ----------68999870996434899766533---59-999999999999864986499876-7756445589999999
Q ss_pred ----HHHHHHHHHHHHCCCCCCCCC--CCCCCCCCC------CCCCCCC-CEEEEHHHCCCCCCCCCCCCCCCHHHHHHH
Q ss_conf ----579999999997498511342--675556542------0002478-156510110222222210246521356888
Q gi|254780285|r 271 ----SPIRDIIDNLARQGYVYEGIL--PPPKSKTTQ------KCDMDRK-QLLFRSTMVGDDVDRPLLKSDGSYTYFAAD 337 (586)
Q Consensus 271 ----~~i~~~i~~l~~~g~~~e~~~--~~~~~~~~~------~~~~~~~-~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~D 337 (586)
T Consensus 145 le~rdeI~~il~~~~~~--~~~e~~~P~~piC~kcGri~~t~v~~~d~~~~v~Y~Ce-~Gh~g~v~ir~g~~K------- 214 (521)
T COG1384 145 LERRDEIMEILNEYRGR--ELEEDWSPFMPICEKCGRILTTPVIEWDGEGTVEYRCE-CGHEGEVDIRGGEGK------- 214 (521)
T ss_pred HHHHHHHHHHHHHHCCC--CCCCCCEECCCCCCCCCCCCEEEEEEECCCCEEEEEEC-CCCCCEEECCCCCCC-------
T ss_conf 86579999999985187--66677230222565558703068899637844999866-886104622336764-------
Q ss_pred HHHHHHHHHCCCCCCCCCC-----CCCHH---HHHHHHHHHHH-HHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHH
Q ss_conf 9999997522555433367-----77613---68999999999-722663451153110110122110000012233024
Q gi|254780285|r 338 LAYFKCKYERGFDNMIYVM-----GSDHS---GYVKRLEAVAA-AVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFI 408 (586)
Q Consensus 338 iA~~~~k~e~~~d~~iyVv-----~~~Q~---~h~~~v~~~~~-~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v 408 (586)
T Consensus 215 ---L~WRvdWp~RW~~lgVd~EPfGKDH~a~ggSydtg~~I~~ei~g~~pP--~~~~YE~i~lkg---~~~mSsSkG~~i 286 (521)
T COG1384 215 ---LPWRVDWPMRWAALGVDFEPFGKDHAAAGGSYDTGKRIAREIFGYEPP--VPFVYEWILLKG---GGKMSSSKGNVI 286 (521)
T ss_pred ---CCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCC--CCCCEEEEEECC---CCCCCCCCCCEE
T ss_conf ---435767500100008310357853134567637899999986499999--777558898548---866556878578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHHH
Q ss_conf 567777763211234555420001233344777-6532
Q gi|254780285|r 409 TLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCK-VKEQ 445 (586)
Q Consensus 409 ~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~-~l~~ 445 (586)
T Consensus 287 ~~~dwlev~~pE~lry~~~r~kP~r~~~~d~~~~il~l 324 (521)
T COG1384 287 SLSDWLEVAPPEVLRYLIARTKPNRHIDFDFDLGILKL 324 (521)
T ss_pred CHHHHHHHCCHHHEEEEEEECCCCCCEECCCCCCHHHH
T ss_conf 59999875398473323540588744331788774477