HHsearch alignment for GI: 254780285 and conserved domain: PRK00260
>PRK00260 cysS cysteinyl-tRNA synthetase; Validated.
Probab=99.54 E-value=9.1e-11 Score=94.50 Aligned_cols=247 Identities=23% Similarity=0.350 Sum_probs=141.9
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
T Consensus 19 ~~~~~v~~Y~CGPTVYd~~HiG~~r~~v~~D~l~R~l~~~g~~v~~v~NiTDi----------------------d---- 72 (460)
T PRK00260 19 LDPGKVKMYVCGPTVYDYAHIGHARSFVVFDVLRRYLRYRGYKVTYVRNITDI----------------------D---- 72 (460)
T ss_pred CCCCEEEEEECCCCCCCCCCHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCC----------------------H----
T ss_conf 89995889967984888732000308999999999999649934999823754----------------------1----
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHHHHCCHHHHHHH
Q ss_conf 01102410000127888887576413430237999999978998875455588708752-10001588730104579999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQH-DIFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~f-D~~~~Es~~~~~~~~~i~~~ 276 (586)
T Consensus 73 -------------DKii~~a~~~----~-~~----~~~~-~~~~~~~f~~d~~~L~i~~p~~~~r~t~~i----~~~i~~ 125 (460)
T PRK00260 73 -------------DKIIKRANEE----G-ES----IKEL-TERYIAAFHEDMDALGVLRPDIEPRATEHI----PEIIEL 125 (460)
T ss_pred -------------HHHHHHHHHH----C-CC----HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCCCH----HHHHHH
T ss_conf -------------9999999981----9-69----9999-999999999999994899985224301479----999999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CC----CCCCCCC--CCCCCHHH--HHHHHHHHHHHH
Q ss_conf 9999974985113426755565420002478156510110---22----2222210--24652135--688899999975
Q gi|254780285|r 277 IDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GD----DVDRPLL--KSDGSYTY--FAADLAYFKCKY 345 (586)
Q Consensus 277 i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~----~~d~vl~--rsDGt~~Y--~t~DiA~~~~k~ 345 (586)
T Consensus 126 i~~l~~~g~aY~~~----------------~~vyFdv~~~~~YG~Ls~~~~~~~~~g~rv~~~~-~K~~p~D--FaLWK~ 186 (460)
T PRK00260 126 IERLIEKGHAYEAD----------------GDVYFDVRKFPDYGKLSGRNLDDLQAGARVEVAE-EKRDPLD--FVLWKA 186 (460)
T ss_pred HHHHHHCCCEEEEC----------------CEEEECCCCCCCHHHCCCCCCHHHHCCCCCCCCC-CCCCCCC--HHHCCC
T ss_conf 99998579528847----------------8799635555330300565302121156567663-4478553--221278
Q ss_pred HCCCC---------------------------CCCCC--CCC-----CHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHC
Q ss_conf 22555---------------------------43336--777-----613689999999997226634511531101101
Q gi|254780285|r 346 ERGFD---------------------------NMIYV--MGS-----DHSGYVKRLEAVAAAVSEKKAQINVLLCELVRL 391 (586)
Q Consensus 346 e~~~d---------------------------~~iyV--v~~-----~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l 391 (586)
T Consensus 187 ~~~ge~~W~SPWG~GRPGWHIECSaM~~~~LG~~~DIH~GG~DL~FPHHENEiAQs~a~~---~~~~a~y-W~H~g~l~i 262 (460)
T PRK00260 187 AKPGEPSWDSPWGKGRPGWHIECSAMSTKYLGETFDIHGGGSDLIFPHHENEIAQSEAAT---GKPFANY-WMHNGFVTV 262 (460)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHH---CCCCCCE-EEEEEEEEE
T ss_conf 888887776988887987422637999987599754762452677899610999998864---8986524-565105763
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 22110000012233024567777763211234555420001233344777653
Q gi|254780285|r 392 YRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKE 444 (586)
Q Consensus 392 ~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~ 444 (586)
T Consensus 263 --~g~--KMSKSlgN~iti~dll~~y~~~~lR~~lLs~hYR~pl~fs~e~L~~ 311 (460)
T PRK00260 263 --NGE--KMSKSLGNFFTIRDLLKKYDPEVLRFFLLSAHYRSPLNFSEEALEE 311 (460)
T ss_pred --CCE--EEECCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf --671--7503578700199999870779999999854689966779999999