HHsearch alignment for GI: 254780285 and conserved domain: PRK12267

>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=99.85  E-value=5.2e-18  Score=145.33  Aligned_cols=351  Identities=19%  Similarity=0.200  Sum_probs=213.8

Q ss_pred             CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r  120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG  199 (586)
Q Consensus       120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~  199 (586)
T Consensus         3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~------~g~----------   66 (644)
T PRK12267          3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEE------AGI----------   66 (644)
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH------CCC----------
T ss_conf             9998996899888998554534878999999999984699759848768752999999998------599----------


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf             10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r  200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN  279 (586)
Q Consensus       200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~  279 (586)
T Consensus        67 -----t----P~e~------------------------~d~~~~~~~~~~~~l~Is~D~f~rTt~~~--h~~~vq~if~~  111 (644)
T PRK12267         67 -----T----PQEY------------------------VDEISAGFKDLWDKLDISYDKFIRTTDER--HKKVVQKVFEK  111 (644)
T ss_pred             -----C----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf             -----9----9999------------------------99999999999998699678785489889--99999999999


Q ss_pred             HHHCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCH---H----
Q ss_conf             99749851134267555654--------------------20002478156510110222222210246521---3----
Q gi|254780285|r  280 LARQGYVYEGILPPPKSKTT--------------------QKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSY---T----  332 (586)
Q Consensus       280 l~~~g~~~e~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~---~----  332 (586)
T Consensus       112 L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~yffkL~~~~~~L~-~~~~~~p~~i~p~~~~n  190 (644)
T PRK12267        112 LYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEESYFFRMSKYADRLL-EFYEENPDFIQPESRKN  190 (644)
T ss_pred             HHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCEEEEHHHHHHHHH-HHHHCCCCEECCHHHHH
T ss_conf             99889978665512325875433362440457868778997646405651443466789999-99960997467625887


Q ss_pred             -----HH---HHHHHHHH----HHHHC--CCCCCCCCCCC-------------CHH------------------HHHHHH
Q ss_conf             -----56---88899999----97522--55543336777-------------613------------------689999
Q gi|254780285|r  333 -----YF---AADLAYFK----CKYER--GFDNMIYVMGS-------------DHS------------------GYVKRL  367 (586)
Q Consensus       333 -----Y~---t~DiA~~~----~k~e~--~~d~~iyVv~~-------------~Q~------------------~h~~~v  367 (586)
T Consensus       191 e~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i  270 (644)
T PRK12267        191 EMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILRFHAI  270 (644)
T ss_pred             HHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHH
T ss_conf             99999985778554302477888885789876079984224300343413862122667763731330268553236688


Q ss_pred             H--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
Q ss_conf             9--999972266345115311011012211000001223302456777776321123455542000-1233344777653
Q gi|254780285|r  368 E--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKE  444 (586)
Q Consensus       368 ~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~  444 (586)
T Consensus       271 ~wpamL~~~~~~~p~-~v~~hg~~~~--~g~--KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~  345 (644)
T PRK12267        271 YWPIMLMALDLPLPK-HLFAHGWWLM--KDG--KMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVE  345 (644)
T ss_pred             HHHHHHHHCCCCCCC-EEECCCEEEC--CCC--EECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf             999999976999864-4510441871--786--00553684223799987559404364644448878777789999999


Q ss_pred             HCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             202443-6788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r  445 QSKENP-VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF  523 (586)
Q Consensus       445 ~~~~nt-~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~  523 (586)
T Consensus       346 r~NsdL~n~lGNl~-~R~~~~~~k~~~g------------~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~  412 (644)
T PRK12267        346 RINSDLANDLGNLL-NRTVAMINKYFDG------------EIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALE  412 (644)
T ss_pred             HHHHHHHHHHHHHH-HHHHHHHHHHCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf             98899887777899-9999998875188------------6788877874569999999999999999997126999999


Q ss_pred             HHHHHHHHHHHHHHHCC
Q ss_conf             99999998899987068
Q gi|254780285|r  524 YLYDLASVFHGHWSHGR  540 (586)
Q Consensus       524 Yl~~La~~Fn~fY~~~~  540 (586)
T Consensus       413 ~i~~l~~~~N~Yi~~~~  429 (644)
T PRK12267        413 ELWKLISRANKYIDETA  429 (644)
T ss_pred             HHHHHHHHHHHHHHHCC
T ss_conf             99999999999888578