HHsearch alignment for GI: 254780285 and conserved domain: PRK12267
>PRK12267 methionyl-tRNA synthetase; Reviewed.
Probab=99.85 E-value=5.2e-18 Score=145.33 Aligned_cols=351 Identities=19% Similarity=0.200 Sum_probs=213.8
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
T Consensus 3 ~k~~~iTt~ipY~Ng~~HiGHa~~~i~aDv~aRy~R~~G~~v~f~~GtDehG~kI~~~A~~------~g~---------- 66 (644)
T PRK12267 3 KKTFYITTPIYYPSGKLHIGHAYTTIAADVLARYKRLQGYDVFFLTGTDEHGQKIQQKAEE------AGI---------- 66 (644)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHH------CCC----------
T ss_conf 9998996899888998554534878999999999984699759848768752999999998------599----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
T Consensus 67 -----t----P~e~------------------------~d~~~~~~~~~~~~l~Is~D~f~rTt~~~--h~~~vq~if~~ 111 (644)
T PRK12267 67 -----T----PQEY------------------------VDEISAGFKDLWDKLDISYDKFIRTTDER--HKKVVQKVFEK 111 (644)
T ss_pred -----C----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf -----9----9999------------------------99999999999998699678785489889--99999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCC--------------------CCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCH---H----
Q ss_conf 99749851134267555654--------------------20002478156510110222222210246521---3----
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTT--------------------QKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSY---T---- 332 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~---~---- 332 (586)
T Consensus 112 L~~kG~Iy~~~~~~~Yc~~ce~f~~~~~l~d~g~cp~cg~~~e~~~ee~yffkL~~~~~~L~-~~~~~~p~~i~p~~~~n 190 (644)
T PRK12267 112 LYDQGDIYLGEYEGWYCVSCETFFTESQLVDGGKCPDSGHEVELVKEESYFFRMSKYADRLL-EFYEENPDFIQPESRKN 190 (644)
T ss_pred HHHCCCEEEEEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCEEECCCCEEEEHHHHHHHHH-HHHHCCCCEECCHHHHH
T ss_conf 99889978665512325875433362440457868778997646405651443466789999-99960997467625887
Q ss_pred -----HH---HHHHHHHH----HHHHC--CCCCCCCCCCC-------------CHH------------------HHHHHH
Q ss_conf -----56---88899999----97522--55543336777-------------613------------------689999
Q gi|254780285|r 333 -----YF---AADLAYFK----CKYER--GFDNMIYVMGS-------------DHS------------------GYVKRL 367 (586)
Q Consensus 333 -----Y~---t~DiA~~~----~k~e~--~~d~~iyVv~~-------------~Q~------------------~h~~~v 367 (586)
T Consensus 191 e~~~~~l~~gL~D~~ISR~~~~WGipvP~d~~~v~YVWfDA~i~Yisa~g~~~~~~~~~~~~Wp~~~h~iGkDii~FH~i 270 (644)
T PRK12267 191 EMLNNFIKPGLEDLAVSRTSFDWGIPVPSDPKHVVYVWIDALLNYITALGYGSDDDELFMKFWPADVHLVGKDILRFHAI 270 (644)
T ss_pred HHHHHHHHCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHCCCCCCCHHHHHHCCHHHCCCCCCHHHHHHH
T ss_conf 99999985778554302477888885789876079984224300343413862122667763731330268553236688
Q ss_pred H--HHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHH
Q ss_conf 9--999972266345115311011012211000001223302456777776321123455542000-1233344777653
Q gi|254780285|r 368 E--AVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKE 444 (586)
Q Consensus 368 ~--~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~ 444 (586)
T Consensus 271 ~wpamL~~~~~~~p~-~v~~hg~~~~--~g~--KmSKS~Gn~i~~~~~~~~~g~D~lRyyl~~~~~~~~D~dfs~~~f~~ 345 (644)
T PRK12267 271 YWPIMLMALDLPLPK-HLFAHGWWLM--KDG--KMSKSKGNVVDPEELVDRYGLDALRYYLLREVPFGSDGDFSPEAFVE 345 (644)
T ss_pred HHHHHHHHCCCCCCC-EEECCCEEEC--CCC--EECCCCCCEECHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 999999976999864-4510441871--786--00553684223799987559404364644448878777789999999
Q ss_pred HCCCCH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf 202443-6788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 445 QSKENP-VFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 445 ~~~~nt-~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
T Consensus 346 r~NsdL~n~lGNl~-~R~~~~~~k~~~g------------~vp~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~~Al~ 412 (644)
T PRK12267 346 RINSDLANDLGNLL-NRTVAMINKYFDG------------EIPAYKGVTEFDEELLALAKETLKKYEEAMEALQFSRALE 412 (644)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHCCC------------CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_conf 98899887777899-9999998875188------------6788877874569999999999999999997126999999
Q ss_pred HHHHHHHHHHHHHHHCC
Q ss_conf 99999998899987068
Q gi|254780285|r 524 YLYDLASVFHGHWSHGR 540 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~~ 540 (586)
T Consensus 413 ~i~~l~~~~N~Yi~~~~ 429 (644)
T PRK12267 413 ELWKLISRANKYIDETA 429 (644)
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999888578