HHsearch alignment for GI: 254780285 and conserved domain: cd00807

>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.34  E-value=2e-06  Score=64.09  Aligned_cols=165  Identities=20%  Similarity=0.239  Sum_probs=95.1

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf             34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r  128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK  207 (586)
Q Consensus       128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~  207 (586)
T Consensus         6 FAPsPtG~lHiG~artal~n~l~Ar~~--~G~~-----------------i----LR------iEDTD~-~---------   46 (238)
T cd00807           6 FPPEPNGYLHIGHAKAAILNFEYAKRY--GGKL-----------------I----LR------FDDTNP-K---------   46 (238)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEE-----------------E----EE------ECCCCC-C---------
T ss_conf             088989864389999999999999982--9969-----------------9----98------677898-7---------


Q ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf             01278888875764134302379999999789988754555887087521000158873010457999999999749851
Q gi|254780285|r  208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVY  287 (586)
Q Consensus       208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~  287 (586)
T Consensus        47 ----------------------------r~~~e~~~~I~~~L~wLGl~~De~~~QS~r~----~~y~~~a~~Li~~G~AY   94 (238)
T cd00807          47 ----------------------------KEDEEAYDSILEDLEWLGIKPDEITYASDYF----DLYYEYAEKLIKMGKAY   94 (238)
T ss_pred             ----------------------------CCCCHHHHHHHHHHHHHCCCCCCCEECCCCH----HHHHHHHHHHHHCCCCC
T ss_conf             ----------------------------6761689999999998489999315636679----99999999999879987


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             13426755565420002478156510110222222210246521356888999999752255543336777613689999
Q gi|254780285|r  288 EGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRL  367 (586)
Q Consensus       288 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v  367 (586)
T Consensus        95 ~h----~-----------------r---~g~k-~~v------~PtY---~fa~vVDD~~~gITHV--iRG~D~l~nt~~q  138 (238)
T cd00807          95 VH----P-----------------R---TGDK-YCV------YPTY---DFAHPIDDSLEGITHS--LRTKEFQDRREKY  138 (238)
T ss_pred             CC----C-----------------C---CCCC-CEE------CCCC---CCCEEECCCCCCCCEE--EECCCCCCCCHHH
T ss_conf             45----4-----------------4---6997-501------4553---3221621645788768--8762101387999


Q ss_pred             HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf             99999722663451153110110122110000012233
Q gi|254780285|r  368 EAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG  405 (586)
Q Consensus       368 ~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G  405 (586)
T Consensus       139 ~~l~~aLg~~~P~~~h~~--~l~--~~~~--klSKR~~  170 (238)
T cd00807         139 DWLYEYLGWRKPEQIEFG--RLN--LEYT--VLSKRKL  170 (238)
T ss_pred             HHHHHHCCCCCCCEEEEE--EEC--CCCC--CCCCCCH
T ss_conf             999998499998678875--487--9997--0546151