HHsearch alignment for GI: 254780285 and conserved domain: cd00807
>cd00807 Gln_GluRS_non_core Glutaminyl-tRNA synthetase (GlnRS) and non-descriminating Glutamyl-tRNA synthetase (GluRS) cataytic core domain. These enzymes attach Gln or Glu, respectively, to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-descriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Probab=98.34 E-value=2e-06 Score=64.09 Aligned_cols=165 Identities=20% Similarity=0.239 Sum_probs=95.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHH
Q ss_conf 34432244117777785689999999985066641020147753145556789875322210245000660110241000
Q gi|254780285|r 128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLK 207 (586)
Q Consensus 128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~ 207 (586)
T Consensus 6 FAPsPtG~lHiG~artal~n~l~Ar~~--~G~~-----------------i----LR------iEDTD~-~--------- 46 (238)
T cd00807 6 FPPEPNGYLHIGHAKAAILNFEYAKRY--GGKL-----------------I----LR------FDDTNP-K--------- 46 (238)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEE-----------------E----EE------ECCCCC-C---------
T ss_conf 088989864389999999999999982--9969-----------------9----98------677898-7---------
Q ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCC
Q ss_conf 01278888875764134302379999999789988754555887087521000158873010457999999999749851
Q gi|254780285|r 208 HVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVY 287 (586)
Q Consensus 208 ~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~ 287 (586)
T Consensus 47 ----------------------------r~~~e~~~~I~~~L~wLGl~~De~~~QS~r~----~~y~~~a~~Li~~G~AY 94 (238)
T cd00807 47 ----------------------------KEDEEAYDSILEDLEWLGIKPDEITYASDYF----DLYYEYAEKLIKMGKAY 94 (238)
T ss_pred ----------------------------CCCCHHHHHHHHHHHHHCCCCCCCEECCCCH----HHHHHHHHHHHHCCCCC
T ss_conf ----------------------------6761689999999998489999315636679----99999999999879987
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 13426755565420002478156510110222222210246521356888999999752255543336777613689999
Q gi|254780285|r 288 EGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRL 367 (586)
Q Consensus 288 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v 367 (586)
T Consensus 95 ~h----~-----------------r---~g~k-~~v------~PtY---~fa~vVDD~~~gITHV--iRG~D~l~nt~~q 138 (238)
T cd00807 95 VH----P-----------------R---TGDK-YCV------YPTY---DFAHPIDDSLEGITHS--LRTKEFQDRREKY 138 (238)
T ss_pred CC----C-----------------C---CCCC-CEE------CCCC---CCCEEECCCCCCCCEE--EECCCCCCCCHHH
T ss_conf 45----4-----------------4---6997-501------4553---3221621645788768--8762101387999
Q ss_pred HHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 99999722663451153110110122110000012233
Q gi|254780285|r 368 EAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 368 ~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
T Consensus 139 ~~l~~aLg~~~P~~~h~~--~l~--~~~~--klSKR~~ 170 (238)
T cd00807 139 DWLYEYLGWRKPEQIEFG--RLN--LEYT--VLSKRKL 170 (238)
T ss_pred HHHHHHCCCCCCCEEEEE--EEC--CCCC--CCCCCCH
T ss_conf 999998499998678875--487--9997--0546151