HHsearch alignment for GI: 254780285 and conserved domain: cd00808
>cd00808 GluRS_core Descriminating Glutamyl-tRNA synthetase (GluRS) catalytic core domain . The descriminating form of GluRS is only found in bacteria and cellular organelles. GluRS is a monomer, that attaches Glu to the appropriate tRNA. Like other class I tRNA synthetases, GluRS aminoacylates the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding.
Probab=98.74 E-value=5.9e-08 Score=74.76 Aligned_cols=83 Identities=25% Similarity=0.315 Sum_probs=45.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCC
Q ss_conf 21024652135688899999975225554333677761368999999999722663451153110110122110000012
Q gi|254780285|r 323 PLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSK 402 (586)
Q Consensus 323 vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmst 402 (586)
T Consensus 96 L~~~gDG~PtY~---fA~vvDD~~~~IThv--iRg~D~~~~t~~q~~l~~~Lg~~~P~f~Hlpl--i-~~~~g~--kLSK 165 (239)
T cd00808 96 LLEEGDGFPTYH---FANVVDDHLMGITHV--IRGEEHLSSTPKQILLYEALGWEPPKFAHLPL--I-LNPDGK--KLSK 165 (239)
T ss_pred HHHCCCCCCCCC---CCCEECCCCCCCCEE--EECHHHHCCCHHHHHHHHHCCCCCCEEECCCC--E-ECCCCC--CCCC
T ss_conf 676599884234---351642654799889--71524105779999999964899980326624--2-689989--7767
Q ss_pred CCCCHHHHHHHHHH
Q ss_conf 23302456777776
Q gi|254780285|r 403 RAGDFITLRHVVDE 416 (586)
Q Consensus 403 R~G~~v~l~dll~e 416 (586)
T Consensus 166 R~~~-~si~~~r~~ 178 (239)
T cd00808 166 RHGD-TSISDYREE 178 (239)
T ss_pred CCCH-HCHHHHHHC
T ss_conf 0872-169999986