HHsearch alignment for GI: 254780285 and conserved domain: cd00814
>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.70 E-value=1.1e-15 Score=128.87 Aligned_cols=256 Identities=20% Similarity=0.321 Sum_probs=140.8
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf 10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY 201 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~ 201 (586)
T Consensus 1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~------------------------- 55 (319)
T cd00814 1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQ------------------------- 55 (319)
T ss_pred CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-------------------------
T ss_conf 9899689987889855330688999999999999659956996877787089999-------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf 24100001278888875764134302379999999789988754555887087521000158873010457999999999
Q gi|254780285|r 202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA 281 (586)
Q Consensus 202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~ 281 (586)
T Consensus 56 --------------kA~~~--g~~----~~---el-~~~y~~~~~~~~~~L~I~~d~~~r~~~~~--~~~~v~~~i~~L~ 109 (319)
T cd00814 56 --------------KAEEE--GVT----PQ---EL-CDKYHEIFKELFKWLNISFDYFGRTTSPR--HKEIVQEFFKKLY 109 (319)
T ss_pred --------------HHHHC--CCC----HH---HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHHHH
T ss_conf --------------99983--998----79---99-99999999999998499878676678806--8999999999999
Q ss_pred HCCCCCCCCCCCCCCCCCC--CCC-CCCCCEEEEHHHCCCC-----------------------------CCCCCCCC--
Q ss_conf 7498511342675556542--000-2478156510110222-----------------------------22221024--
Q gi|254780285|r 282 RQGYVYEGILPPPKSKTTQ--KCD-MDRKQLLFRSTMVGDD-----------------------------VDRPLLKS-- 327 (586)
Q Consensus 282 ~~g~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~-----------------------------~d~vl~rs-- 327 (586)
T Consensus 110 ~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~ 189 (319)
T cd00814 110 ENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKEGLKDLSITRDLF 189 (319)
T ss_pred HCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf 78988884102636588764564664226378788997899999996098764680577888776543777200103555
Q ss_pred ---------CCCHHHHHHHH--HHH------HHHHHC------CCCCCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCCEE
Q ss_conf ---------65213568889--999------997522------555433367776136899999-999972266345115
Q gi|254780285|r 328 ---------DGSYTYFAADL--AYF------KCKYER------GFDNMIYVMGSDHSGYVKRLE-AVAAAVSEKKAQINV 383 (586)
Q Consensus 328 ---------DGt~~Y~t~Di--A~~------~~k~e~------~~d~~iyVv~~~Q~~h~~~v~-~~~~~lg~~~~~~~~ 383 (586)
T Consensus 190 ~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a~~~~~~~-~~ 268 (319)
T cd00814 190 KWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLGAGLPLPT-RI 268 (319)
T ss_pred CCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-EE
T ss_conf 45898889888543002101234000146666656876444568841267844764318887899999856998786-88
Q ss_pred EECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf 31101101221100000122330245677777632112345554200012
Q gi|254780285|r 384 LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSE 433 (586)
Q Consensus 384 ~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~ 433 (586)
T Consensus 269 ~~~g~l~~--~Ge--KMSKSlGN~i~~~dll~~~~~d~lR~~lls~~p~~ 314 (319)
T cd00814 269 FAHGYLTV--EGK--KMSKSRGNVVDPDDLLERYGADALRYYLLRERPEG 314 (319)
T ss_pred EECCEEEE--CCE--ECCCCCCCCCCHHHHHHHCCCHHEHHHHHCCCCCC
T ss_conf 87023998--994--63772997445999998779135668776168888