HHsearch alignment for GI: 254780285 and conserved domain: cd00814

>cd00814 MetRS_core This is the catalytic core domain of methionine tRNA synthetase (MetRS). This class I enzyme aminoacylates the 2'-OH of the nucleotide at the 3' of the appropriate tRNA. MetRS, which consists of the core domain and a anti-codon binding domain functions as a monomer. However, in some species, the anti-codon binding domain is followed by an EMAP domain. In this case, MetRS functions as a homodimer. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. It contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. As a result of a deletion event, MetRS has a significantly shorter core domain insertion that IleRS, ValRS, and LeuR. Consequently, the MetRS insertion lacks the editing function.
Probab=99.70  E-value=1.1e-15  Score=128.87  Aligned_cols=256  Identities=20%  Similarity=0.321  Sum_probs=140.8

Q ss_pred             CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf             10002234432244117777785689999999985066641020147753145556789875322210245000660110
Q gi|254780285|r  122 KVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYY  201 (586)
Q Consensus       122 kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~  201 (586)
T Consensus         1 ~~~v~~~~Ptv~g~lHiGHar~~v~~Dil~R~lr~~G~~V~~vt~~Dd~~~kIi~-------------------------   55 (319)
T cd00814           1 KVLITTALPYVNGVPHLGHLYGTVLADVFARYQRLRGYDVLFVTGTDEHGTKIEQ-------------------------   55 (319)
T ss_pred             CEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHH-------------------------
T ss_conf             9899689987889855330688999999999999659956996877787089999-------------------------


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHH
Q ss_conf             24100001278888875764134302379999999789988754555887087521000158873010457999999999
Q gi|254780285|r  202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLA  281 (586)
Q Consensus       202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~  281 (586)
T Consensus        56 --------------kA~~~--g~~----~~---el-~~~y~~~~~~~~~~L~I~~d~~~r~~~~~--~~~~v~~~i~~L~  109 (319)
T cd00814          56 --------------KAEEE--GVT----PQ---EL-CDKYHEIFKELFKWLNISFDYFGRTTSPR--HKEIVQEFFKKLY  109 (319)
T ss_pred             --------------HHHHC--CCC----HH---HH-HHHHHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHHHHHHHH
T ss_conf             --------------99983--998----79---99-99999999999998499878676678806--8999999999999


Q ss_pred             HCCCCCCCCCCCCCCCCCC--CCC-CCCCCEEEEHHHCCCC-----------------------------CCCCCCCC--
Q ss_conf             7498511342675556542--000-2478156510110222-----------------------------22221024--
Q gi|254780285|r  282 RQGYVYEGILPPPKSKTTQ--KCD-MDRKQLLFRSTMVGDD-----------------------------VDRPLLKS--  327 (586)
Q Consensus       282 ~~g~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~g~~-----------------------------~d~vl~rs--  327 (586)
T Consensus       110 ~~G~~y~~~~~~~y~~~~~~~~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~isR~~~  189 (319)
T cd00814         110 ENGYIYEGEYEGLYCVSCERFLPEWREEEHYFFRLSKFQDKLLEWLEENPDFIWPENARNEVLSWLKEGLKDLSITRDLF  189 (319)
T ss_pred             HCCCEEEECCEEEECCCCCCCCCEEEECCCEEEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCHHHCCCCC
T ss_conf             78988884102636588764564664226378788997899999996098764680577888776543777200103555


Q ss_pred             ---------CCCHHHHHHHH--HHH------HHHHHC------CCCCCCCCCCCCHHHHHHHHH-HHHHHHCCCCCCCEE
Q ss_conf             ---------65213568889--999------997522------555433367776136899999-999972266345115
Q gi|254780285|r  328 ---------DGSYTYFAADL--AYF------KCKYER------GFDNMIYVMGSDHSGYVKRLE-AVAAAVSEKKAQINV  383 (586)
Q Consensus       328 ---------DGt~~Y~t~Di--A~~------~~k~e~------~~d~~iyVv~~~Q~~h~~~v~-~~~~~lg~~~~~~~~  383 (586)
T Consensus       190 ~WG~~~P~~~~~~~yvW~da~~gy~~~~~~~~~~~~~~~~~~~~~~~~ih~~G~Di~~~H~~~~~a~~~a~~~~~~~-~~  268 (319)
T cd00814         190 KWGIPVPLDPDKVIYVWFDALIGYISATGYYTDEWGNSWWWNDPWPELVHFIGKDIVPFHAIYWPAMLLGAGLPLPT-RI  268 (319)
T ss_pred             CCCCCCCCCCCCEEECCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCCCC-EE
T ss_conf             45898889888543002101234000146666656876444568841267844764318887899999856998786-88


Q ss_pred             EECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHH
Q ss_conf             31101101221100000122330245677777632112345554200012
Q gi|254780285|r  384 LLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKNSE  433 (586)
Q Consensus       384 ~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~~~  433 (586)
T Consensus       269 ~~~g~l~~--~Ge--KMSKSlGN~i~~~dll~~~~~d~lR~~lls~~p~~  314 (319)
T cd00814         269 FAHGYLTV--EGK--KMSKSRGNVVDPDDLLERYGADALRYYLLRERPEG  314 (319)
T ss_pred             EECCEEEE--CCE--ECCCCCCCCCCHHHHHHHCCCHHEHHHHHCCCCCC
T ss_conf             87023998--994--63772997445999998779135668776168888