HHsearch alignment for GI: 254780285 and conserved domain: cd07956
>cd07956 Anticodon_Ia_Arg Anticodon-binding domain of arginyl tRNA synthetases. This domain is found in arginyl tRNA synthetases (ArgRS), which belong to the class Ia aminoacyl tRNA synthetases. It lies C-terminal to the catalytic core domain, and recognizes and specifically binds to the tRNA anticodon. ArgRS catalyzes the transfer of arginine to the 3'-end of its tRNA.
Probab=100.00 E-value=3.4e-44 Score=329.05 Aligned_cols=156 Identities=31% Similarity=0.473 Sum_probs=139.0
Q ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 76321123455542000123334477765320244367888888889999875332002468322342235521149989
Q gi|254780285|r 415 DEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTS 494 (586)
Q Consensus 415 ~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (586)
T Consensus 1 e~Ig~~Airy~~L~~~~~~~~~FD~d~~~~~-~gnt~~YiQYa~aR~~SIl~k~~~~~~~~-------~~~~~~~l~~~~ 72 (156)
T cd07956 1 EEVGVGAVKYQDLSNKRIKDYTFDWERMLSF-EGDTGPYLQYAHARLCSILRKAGETIEAE-------ADADLSLLPEPD 72 (156)
T ss_pred CCCCHHHHHHHHHHCCCCCCCEECHHHHHCC-CCCCCEEHHHHHHHHHHHHHHCCCCCCCC-------CCCCHHCCCCHH
T ss_conf 9642357888998638999845529998623-68985112489999999999724545332-------225420049989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999998421899999998528127999999999988999870686666654357878999999999999999999987
Q gi|254780285|r 495 ELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGL 574 (586)
Q Consensus 495 E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L 574 (586)
T Consensus 73 e~~Li~~l~~fp~vl~~a~~~~~P~~l~~YL~~La~~F~~fY~~~------~Ii~-~~~~~~~~RL~L~~a~~~vL~~gL 145 (156)
T cd07956 73 ERDLILLLAKFPEVVKNAAETLEPHTIATYLFDLAHAFSKFYNAC------PVLG-AEEELRNARLALVAAARQVLANGL 145 (156)
T ss_pred HHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC------CCCC-CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999996572899999997070699999999999999999749------8878-988999999999999999999986
Q ss_pred HHCCCCCCCCC
Q ss_conf 31587985445
Q gi|254780285|r 575 NIIGVESPNEM 585 (586)
Q Consensus 575 ~LLGI~~perM 585 (586)
T Consensus 146 ~lLGI~~~ekM 156 (156)
T cd07956 146 DLLGIEAPERM 156 (156)
T ss_pred HHCCCCCCCCC
T ss_conf 51198966669