HHsearch alignment for GI: 254780285 and conserved domain: pfam00749

>pfam00749 tRNA-synt_1c tRNA synthetases class I (E and Q), catalytic domain. Other tRNA synthetase sub-families are too dissimilar to be included. This family includes only glutamyl and glutaminyl tRNA synthetases. In some organisms, a single glutamyl-tRNA synthetase aminoacylates both tRNA(Glu) and tRNA(Gln).
Probab=99.22  E-value=4.8e-11  Score=96.43  Aligned_cols=238  Identities=20%  Similarity=0.206  Sum_probs=100.8

Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH------HHHHHHHHHHHHHCCCCCCCCCHHHC
Q ss_conf             344322441177777856899999999850666410201477531455------56789875322210245000660110
Q gi|254780285|r  128 VSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQIN------TLALSVFWRYQQALYNNDSDLPEGYY  201 (586)
Q Consensus       128 sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~------~li~~~~~~~~~~~~~~~~~~~e~~~  201 (586)
T Consensus         6 FAPSPTG~lHiG~~rtAl~n~l~Ar~~--~G~fiLR---IEDtD~~R~~~e~~~~I~~dL~wLGl~w--D------e---   69 (314)
T pfam00749         6 FAPSPTGYLHIGHARTALFNYLFAKNY--NGKFILR---FDDTDPEREKPEYEESILEDLKWLGIKW--D------E---   69 (314)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHH--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHHCCCC--C------C---
T ss_conf             288989864489999999999999980--9989999---6878988687689999999999953789--9------8---


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf             241000012788888757641343023799999997899887545558870875-2100015887301045799999999
Q gi|254780285|r  202 PGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQ-HDIFISEDDFHRGDPSPIRDIIDNL  280 (586)
Q Consensus       202 ~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~-fD~~~~Es~~~~~~~~~i~~~i~~l  280 (586)
T Consensus        70 -~~~~QS~r~~~Y~~~~~~L~~~g~-a----Y~C~cs~~el~~~r~~~~~~~~~~~~~y~~~~~------~l~~~~~~~~  137 (314)
T pfam00749        70 -KPYYQSDRFDIYYKYAEELIEKGL-A----YVCFCTPEELEEEREEQEALGSPERPRYDEECL------RLFEEEMRKG  137 (314)
T ss_pred             -CCEEHHCCHHHHHHHHHHHHHCCC-C----CCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHC------CCCHHHHHCC
T ss_conf             -835520209999999999997499-5----225899999999998776359998998832202------2799998615


Q ss_pred             HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC-CCCCC
Q ss_conf             97498511342675556542000247815651011022222221024652135688899999975225554333-67776
Q gi|254780285|r  281 ARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIY-VMGSD  359 (586)
Q Consensus       281 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iy-Vv~~~  359 (586)
T Consensus       138 ~~~~~~~~~R~k~~~~~~~~~~D~v~G~i~~~~~~~~---D~vi~R~dg~ptY~---lA~vVDD~---~~~IThViRG~D  208 (314)
T pfam00749       138 EAEGGKATLRFKIPMESPYVMRDLVRGRIKFEPSALH---DRTGLKWDGYPTYD---FAVVIDDA---IMGITHVLRGEE  208 (314)
T ss_pred             CCCCCCCEEEEECCCCCCEEEECCCCCEEEECHHHCC---CCEEECCEEEEEEE---EEEEECCC---CCCCCEEECCCC
T ss_conf             0258872278850688862676576653884445388---61764460545652---30587255---688883756601


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH
Q ss_conf             136899999999972266345115311011012211000001223302
Q gi|254780285|r  360 HSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF  407 (586)
Q Consensus       360 Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~  407 (586)
T Consensus       209 ~l~~T~~Q~~l~~aLg~~~P~y~H~pl---i~~~~G~--kLSKR~~~~  251 (314)
T pfam00749       209 HLDNTPKQIWIYQALGWEVPPFIHEYL---RLNLDGT--KLSKRKLSL  251 (314)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCEEEEEE---EECCCCC--CCCCCCCHH
T ss_conf             001889999999963999985698870---8989998--533727621