HHsearch alignment for GI: 254780285 and conserved domain: pfam01406
>pfam01406 tRNA-synt_1e tRNA synthetases class I (C) catalytic domain. This family includes only cysteinyl tRNA synthetases.
Probab=99.65 E-value=6.3e-15 Score=123.66 Aligned_cols=266 Identities=23% Similarity=0.246 Sum_probs=141.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
T Consensus 6 ~~~~v~~YicgPt~Y~~pHIGHa~t~I~~Dvi~R~~r~~G~~V~fv~g~ddhgdKI~~~A~~------~g~--------- 70 (301)
T pfam01406 6 HQGKVNMYVCGPTVYDDSHIGHARSAVAFDVLRRYLQALGYDVQFVQNFTDIDDKIIKRAQQ------QGE--------- 70 (301)
T ss_pred CCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH------HCC---------
T ss_conf 79937899789906899752233689999999999997499469996778631799999998------098---------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-CCEECHHHHHHCCHHHHHHHH
Q ss_conf 1102410000127888887576413430237999999978998875455588708752-100015887301045799999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQH-DIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~f-D~~~~Es~~~~~~~~~i~~~i 277 (586)
T Consensus 71 ----------~p~e~~d------------------------~~~~~F~~~~~~L~I~~~d~~~rtTeh----i~~v~~~i 112 (301)
T pfam01406 71 ----------SFRELAA------------------------RFITAYTKDMDALNVLPPDLEPRVTEH----IDEIIEFI 112 (301)
T ss_pred ----------CHHHHHH------------------------HHHHHHHHHHHHHCCCCCCCCCCCCCC----HHHHHHHH
T ss_conf ----------6537999------------------------999999988998498289868775435----79999999
Q ss_pred HHHHHCCCCCCCCCCC-----CCCCCCCCCC------CCCCCEEEEHHHCCCCCCCCCCC--CCCCHHHHHH--------
Q ss_conf 9999749851134267-----5556542000------24781565101102222222102--4652135688--------
Q gi|254780285|r 278 DNLARQGYVYEGILPP-----PKSKTTQKCD------MDRKQLLFRSTMVGDDVDRPLLK--SDGSYTYFAA-------- 336 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~-----~~~~~~~~~~------~~~~~~~~~~~~~g~~~d~vl~r--sDGt~~Y~t~-------- 336 (586)
T Consensus 113 ~~L~~kG~~Y~~~~~~~Yf~~~~~~~yg~l~~~~~~~~~~~~~~~~~~~k~~~~df~Lwk~~~~~~~~~~~pwg~~~PgW 192 (301)
T pfam01406 113 ERLIKKGYAYVSDNGDVYFDVSSFPDYGKLSGQNLEQLEAGARGEVGEGKRDPLDFALWKASKEGEPSWDSPWGKGRPGW 192 (301)
T ss_pred HHHHHCCCEEECCCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCHHHEECCCCCCCCCCCCCCCCCCCCC
T ss_conf 99997797687269988996667465440464357777525776644332580353321145667877557777898975
Q ss_pred --HHHHH-HHHHHCCCCCCCCCCCCCHH-HHHHHHHHHHHHHC-CCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHH
Q ss_conf --89999-99752255543336777613-68999999999722-663451153110110122110000012233024567
Q gi|254780285|r 337 --DLAYF-KCKYERGFDNMIYVMGSDHS-GYVKRLEAVAAAVS-EKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLR 411 (586)
Q Consensus 337 --DiA~~-~~k~e~~~d~~iyVv~~~Q~-~h~~~v~~~~~~lg-~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~ 411 (586)
T Consensus 193 hie~~~~~~~~~g~~~D--iH~~G~Di~~pH~~~~~A~~~a~~~~~~~~-~~~h~G~l~~--~G~--KMSKSlGNvv~~~ 265 (301)
T pfam01406 193 HIECSAMARKYLGSQID--IHGGGVDLKFPHHENEIAQSEAAFDQQLAK-YWLHNGHLMI--EGE--KMSKSLGNFLTIR 265 (301)
T ss_pred CEEEEHHHHHHCCCCCC--EECCCEEECCCCCHHHHHHHHHHHCCCCCE-EEEEEEEEEE--CCE--ECCCCCCCCCCHH
T ss_conf 46650677874189873--302765101355241999999851999514-9998527987--883--8666478737799
Q ss_pred HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Q ss_conf 777763211234555420001233344777653
Q gi|254780285|r 412 HVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKE 444 (586)
Q Consensus 412 dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~ 444 (586)
T Consensus 266 dl~~~~g~d~~Ryfll~~~y~~~~~fs~~~l~~ 298 (301)
T pfam01406 266 DVLKRYDPRILRYFLLSVHYRSPLDFSEELLEQ 298 (301)
T ss_pred HHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHH
T ss_conf 998768999999999846589987879999997