HHsearch alignment for GI: 254780285 and conserved domain: pfam05746
>pfam05746 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain in Arginyl and glycyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids.
Probab=99.97 E-value=5.8e-30 Score=229.16 Aligned_cols=117 Identities=38% Similarity=0.629 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88888889999875332002468322342235521149989999999984218999999985281279999999999889
Q gi|254780285|r 454 VQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn 533 (586)
T Consensus 1 iqYa~aRi~SIl~k~~~~~~~~~--------~~~~~~~~~~E~~Li~~l~~f~~~l~~a~~~~~P~~l~~Yl~~La~~f~ 72 (117)
T pfam05746 1 LQYAHARICSILRKAGELGINLD--------IDALLLLEEEEKELLKALLQFPEVVEEAAEELEPHRLANYLYDLASAFH 72 (117)
T ss_pred CCHHHHHHHHHHHHCCCCCCCCC--------CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 97889999999984676677655--------4300129999999999880529999999986686999999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9987068666665435787899999999999999999998731587985445
Q gi|254780285|r 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 534 ~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
T Consensus 73 ~fY~~~------~Il~~-~~~~~~~RL~L~~~~~~vl~~gl~lLGI~~~ekM 117 (117)
T pfam05746 73 SFYNNC------RVLDE-DDEERNARLALLKAVRQVLKNGLDLLGIEAPEKM 117 (117)
T ss_pred HHHHHC------CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 999719------67489-8899999999999999999999786198976779