HHsearch alignment for GI: 254780285 and conserved domain: smart00836
>smart00836 DALR_1 DALR anticodon binding domain. This all alpha helical domain is the anticodon binding domain of Arginyl tRNA synthetase. This domain is known as the DALR domain after characteristic conserved amino acids PUBMED:10447505.
Probab=99.97 E-value=5.1e-31 Score=236.59 Aligned_cols=122 Identities=38% Similarity=0.543 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 88888889999875332002468322342235521149989999999984218999999985281279999999999889
Q gi|254780285|r 454 VQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFH 533 (586)
Q Consensus 454 iqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn 533 (586)
T Consensus 1 iQYa~aRi~SIl~k~~~~~~~~~~----~~~~~~~~l~~~~E~~Li~~l~~f~~vl~~a~~~~~P~~l~~Yl~~La~~f~ 76 (122)
T smart00836 1 VQYAHARICSILRKAGEAGLTLPD----IADADLSLLTEPEELALLRLLARFPEVLEAAAETLEPHRLANYLYDLASAFH 76 (122)
T ss_pred CCHHHHHHHHHHHHHCCCCCCCCC----CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 958899999999961223778643----2313353259999999999999778999999997695899999999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9987068666665435787899999999999999999998731587985445
Q gi|254780285|r 534 GHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 534 ~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
T Consensus 77 ~fY~~~------~Il~~~~~~~~~~RL~L~~~~~~vl~~~l~lLGI~~~ekM 122 (122)
T smart00836 77 SFYNKC------RVLGEENPELRAARLALLKAVRQVLANGLRLLGISAPERM 122 (122)
T ss_pred HHHHCC------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 998438------4236898999999999999999999999874199976779