HHsearch results for GI: 254780285 and protein with PDBid: 1f7u_A
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=0 Score=999.14 Aligned_cols=532 Identities=23% Similarity=0.347 Sum_probs=446.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
||+.+.+++.|.+.|+++. +++...+. ..||+|++++||||+||+||.++| |+||++||++|+++++.++.|++
T Consensus 29 ~n~~d~~r~~i~~~l~~~~---g~~~~~~~-~~ie~p~~~~~GD~a~~~a~~~~k--~knP~~iA~~i~~~l~~~~~i~~ 102 (607)
T 1f7u_A 29 VNIVDLMRNYISQELSKIS---GVDSSLIF-PALEWTNTMERGDLLIPIPRLRIK--GANPKDLAVQWAEKFPCGDFLEK 102 (607)
T ss_dssp TCHHHHHHHHHHHHHHHHH---CCCHHHHG-GGCEECSSGGGCSEEEEGGGGCCT--TCCHHHHHHHHHHTCCCTTTEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCHHHHH-HHCCCCCCCCCCCCHHHHHHHHHC--CCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 6878999999999999872---99988888-755699999885839999999966--99999999999983788786757
Q ss_pred EEEECCCEEEEEECHHHHHH-HHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88547976878888889999-99999856221388765655410002234432244117777785689999999985066
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGY 159 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~-~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~ 159 (586)
+|++|| ||||+|+++++.+ ++.+++..+..||++..++++||+||||||||||||||||+|||+|||+|+|||+++||
T Consensus 103 vevagp-FINf~l~~~~l~~~vl~~il~~~~~~g~~~~~~~kkViVEf~SaNptkplHvGHlR~aiiGd~Lanll~~~G~ 181 (607)
T 1f7u_A 103 VEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGW 181 (607)
T ss_dssp EEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECC-EEEEEECHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998788-7889999999999999999853031287756899879998517989988633135627999999999998799
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH------------HHH---HHHHHHHHHHHCC
Q ss_conf 6410201477531455567898753222102450006601102410000------------127---8888875764134
Q gi|254780285|r 160 EVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKH------------VGK---ELADKYSSELLNF 224 (586)
Q Consensus 160 ~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~------------~~~---e~~~~~~~~~~~~ 224 (586)
+|+|+|||||||+|||++++++..+..+.... ..+..++...|... ..+ +...++...+..
T Consensus 182 ~V~re~YinD~G~Qi~~l~~s~~~~~~~~~~~---~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~- 257 (607)
T 1f7u_A 182 EVIRMNYLGDWGKQFGLLAVGFERYGNEEALV---KDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMED- 257 (607)
T ss_dssp EEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHH---HCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHH-
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-
T ss_conf 18885424755418899999999844545555---55412478899987775301210100334568999999997751-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30237999999978998875455588708752100015887301045799999999974985113426755565420002
Q gi|254780285|r 225 PEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDM 304 (586)
Q Consensus 225 ~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~ 304 (586)
.+....+. |+..++++++.++++|++|||+||.|.+||+++. ..+..+++.|+++|++++
T Consensus 258 ~d~~~~~~-w~~~~~~s~~~~~~~~~~l~V~fD~~~~Es~~~~---~~~~~~~~~l~~~g~~~e---------------- 317 (607)
T 1f7u_A 258 GDEEALKI-WKRFREFSIEKYIDTYARLNIKYDVYSGESQVSK---ESMLKAIDLFKEKGLTHE---------------- 317 (607)
T ss_dssp TCHHHHHH-HHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCH---HHHHHHHHHHHHTTCEEE----------------
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC---HHHHHHHHHHHHCCCCCC----------------
T ss_conf 57999999-8766666799999998625702122221221100---006889999986598220----------------
Q ss_pred CCCCEEEEHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 478156510110222222-2102465213568889999997522-5554333677761368999999999722663-451
Q gi|254780285|r 305 DRKQLLFRSTMVGDDVDR-PLLKSDGSYTYFAADLAYFKCKYER-GFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK-AQI 381 (586)
Q Consensus 305 ~~~~~~~~~~~~g~~~d~-vl~rsDGt~~Y~t~DiA~~~~k~e~-~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~-~~~ 381 (586)
+++++|++.+.++++.++ +++|||||+||+|+|||||++|+++ +||++|||||++|.+||+|++.+++.||++. ..+
T Consensus 318 ~~ga~~~~~~~~~~~~~~~vl~ksDGt~tY~t~DIAyh~~K~~r~~fD~~I~V~gadq~~h~~~l~~~l~~lg~~~~~~~ 397 (607)
T 1f7u_A 318 DKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDL 397 (607)
T ss_dssp ETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGE
T ss_pred CCCCHHCCHHHHHCCCCCEEEEECCCCEEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 03440001154413566425881699610020088999998871077756651460365799999999998289721034
Q ss_pred EEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH----------------------------HHHHHHHHHHHHHCCHH
Q ss_conf 15311011012211000001223302456777776----------------------------32112345554200012
Q gi|254780285|r 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE----------------------------VGSDSVRFMMLWRKNSE 433 (586)
Q Consensus 382 ~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e----------------------------vg~~aiky~~L~~~~~~ 433 (586)
.|+.+|++. +||||+|++|+|+|++++ ||++|+||++|++++.+
T Consensus 398 ~hv~~g~~~--------~mstR~G~~v~L~dll~e~~~~~~~~~~~~~~~~~~~~~~~~~a~~vg~~avr~~~l~~~~~~ 469 (607)
T 1f7u_A 398 QHVNFGMVQ--------GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRIN 469 (607)
T ss_dssp EEECCCCEE--------SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CEEEECCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 134311222--------455300024338999999999999999850233103578889999972558899998604455
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33344777653202443678888888899998753320024683223422355211499899999999842189999999
Q gi|254780285|r 434 LLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENAT 513 (586)
Q Consensus 434 ~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~ 513 (586)
+|+|||++++++ +|||+|||||||||||||||||+....+. ....+.+.+.++.|++|++.|++||++|..|+
T Consensus 470 ~~~Fd~d~~~~~-~g~t~pYvQYahARi~SIlrka~~~~~~~------~~~~d~~~L~~~~e~~L~~~L~~fp~vv~~a~ 542 (607)
T 1f7u_A 470 NYEFKWERMLSF-EGDTGPYLQYAHSRLRSVERNASGITQEK------WINADFSLLKEPAAKLLIRLLGQYPDVLRNAI 542 (607)
T ss_dssp CEECCHHHHHCC-SSSSHHHHHHHHHHHHHHHHHTTTSCHHH------HTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 544579998640-48854769999999999998720466200------14555321599999999999998999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 852812799999999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 514 IAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 514 ~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
++++||+||.||++||++||+||++|+ |+. ++++++.+||+||.||++||++||+||||+|||||
T Consensus 543 ~~~ePh~l~~YL~~LA~~f~sfY~~~~------Vl~-~~~e~~~aRL~L~~a~~~vl~~gL~LLGI~~~erM 607 (607)
T 1f7u_A 543 KTHEPTTVVTYLFKLTHQVSSCYDVLW------VAG-QTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHCC------STT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCC------CCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 959848999999999999999870187------789-99899999999999999999998661498844669