HHsearch results for GI: 254780285 and protein with PDBid: 1irx_A
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.90 E-value=8.2e-24 Score=184.48 Aligned_cols=295 Identities=16% Similarity=0.132 Sum_probs=146.3
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
++..+|||+ +||+|||||||||+|++++||+|+|+|.+.||+|..+.+|+|.|.+-. +.-++...+.+.+.....+.|
T Consensus 17 ~~~~~~v~~-~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~~~filrieDtD~~R~-~~~~~~~~~~~~lg~~~~e~p 94 (523)
T 1irx_A 17 GEKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRK-VPRNVPQEWKDYLGMPISEVP 94 (523)
T ss_dssp CCCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCC-CCSSSCGGGGGGTTSBGGGSC
T ss_pred CCCCEEEEE-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHC-CCHHHHHHHHHHCCCCHHHCC
T ss_conf 898739994-378899863024782628999999999976968699999989851201-300099999997699766558
Q ss_pred H-HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHH
Q ss_conf 0-110241000012788888757641343023799999997899887545558870875210001588730104579999
Q gi|254780285|r 198 E-GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e-~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~ 276 (586)
+ +...+.|......... .+.+.+....+..... ..++....++..+.............. .
T Consensus 95 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 156 (523)
T 1irx_A 95 DPWGCHESYAEHFMRKFE-EEVEKLGIEVDLLYAS--ELYKRGEYSEEIRLAFEKRDKIMEILN---------------K 156 (523)
T ss_dssp CTTSSSSSHHHHHHHHHH-HHHHTTTCCCEEEEHH--HHHHTTTTHHHHHHHHHTHHHHHHHHH---------------H
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHCCC---------------C
T ss_conf 988775449999998889-9999838754444627--887515899999999997402231144---------------2
Q ss_pred HHHHHHC---CCCCCCC--CCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999974---9851134--2675556542000247815651011022222221024652135688899999975225554
Q gi|254780285|r 277 IDNLARQ---GYVYEGI--LPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDN 351 (586)
Q Consensus 277 i~~l~~~---g~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~ 351 (586)
....... ...+... ..............+...........+...+.++.++||.++|..---+++. .++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~v 231 (523)
T 1irx_A 157 YREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWS-----HFGV 231 (523)
T ss_dssp HHHHTTCCCCCTTCCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHH-----HSCC
T ss_pred HHEEEECCCCCCCCCCCCCHHCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHHHC-----CCCC
T ss_conf 01023123233454455521114575541477627853799866887320464069873555326202112-----7873
Q ss_pred CCCCCCCCHHHH----HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333677761368----9999999997226634511531101101221100000122330245677777632112345554
Q gi|254780285|r 352 MIYVMGSDHSGY----VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMML 427 (586)
Q Consensus 352 ~iyVv~~~Q~~h----~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L 427 (586)
-+.+.|.+|-.. ......+...+|+..+.+.|+. ++.+ ++...|||+|.|++++++++++.++.++++|.++
T Consensus 232 ~~~~~g~dh~~~~~~~~~~~~~~~~~~~~~~p~~~h~~--~l~~--~~~~~KmSKr~g~~~~~~~~~~~~~~~~~~~~~~ 307 (523)
T 1irx_A 232 DFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYE--FVGI--KGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYA 307 (523)
T ss_dssp CBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEEC--CEEE--SCC---------CCCCHHHHHTTSCHHHHHHHHH
T ss_pred EEECCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEE--EEEC--CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 68757121037840678889999860688886578983--5761--7755456666666214999987079999899873
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 20001233344777
Q gi|254780285|r 428 WRKNSELLDFDFCK 441 (586)
Q Consensus 428 ~~~~~~~~~Fd~d~ 441 (586)
+....+.+.||.+.
T Consensus 308 ~~~~~~~~~~~~~~ 321 (523)
T 1irx_A 308 RHRPNKEIKIDLGL 321 (523)
T ss_dssp SSCTTSCEEECCST
T ss_pred CCCCCCCCCCCCCH
T ss_conf 78876565502101