HHsearch results for GI: 254780285 and protein with PDBid: 2d5b_A

>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.83  E-value=3e-18  Score=145.44  Aligned_cols=344  Identities=14%  Similarity=0.120  Sum_probs=187.5

Q ss_pred             CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r  120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG  199 (586)
Q Consensus       120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~  199 (586)
                      +|+.+|.-.=|-|++++|+||+|+.++.|.++|.++..||+|.-.--.+|-|..+-.-+.       +.           
T Consensus         2 ~k~~~it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~V~~v~g~D~~g~~I~~~a~-------~~-----------   63 (500)
T 2d5b_A            2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------AA-----------   63 (500)
T ss_dssp             CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH-------HH-----------
T ss_pred             CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH-------HC-----------
T ss_conf             987898079988899723340587899999999999359956820862740699999999-------85-----------


Q ss_pred             HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf             10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r  200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN  279 (586)
Q Consensus       200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~  279 (586)
                         |.                    .       .+++ .+...+.+++++++|||.+|.+..-++..  ....+.+++..
T Consensus        64 ---g~--------------------~-------~~e~-~~~~~~~~~~~~~~lgi~~D~~~~t~~~~--~~~~v~~~~~~  110 (500)
T 2d5b_A           64 ---GE--------------------D-------PKAF-VDRVSGRFKRAWDLLGIAYDDFIRTTEER--HKKVVQLVLKK  110 (500)
T ss_dssp             ---TS--------------------C-------HHHH-HHHHHHHHHHHHHHTTCCCSEEEETTSHH--HHHHHHHHHHH
T ss_pred             ---CC--------------------C-------HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf             ---99--------------------9-------9999-99999999999999599888785369878--87789998888


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCC-----------------C--CCCCCCEEEEHHHCCCCCCCC-----------------
Q ss_conf             9974985113426755565420-----------------0--024781565101102222222-----------------
Q gi|254780285|r  280 LARQGYVYEGILPPPKSKTTQK-----------------C--DMDRKQLLFRSTMVGDDVDRP-----------------  323 (586)
Q Consensus       280 l~~~g~~~e~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~g~~~d~v-----------------  323 (586)
                      |.++|++|+......-+..+..                 .  ....+..++....+.+.....                 
T Consensus       111 l~~~G~~y~~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (500)
T 2d5b_A          111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV  190 (500)
T ss_dssp             HHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHH
T ss_pred             HHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             98669831342674121254432248876420012356773773154134446666567888765175324606668888


Q ss_pred             ------------CC--C-----------CCCCHHHHHHHHH--HH-------HHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf             ------------10--2-----------4652135688899--99-------9975225554333677761368999999
Q gi|254780285|r  324 ------------LL--K-----------SDGSYTYFAADLA--YF-------KCKYERGFDNMIYVMGSDHSGYVKRLEA  369 (586)
Q Consensus       324 ------------l~--r-----------sDGt~~Y~t~DiA--~~-------~~k~e~~~d~~iyVv~~~Q~~h~~~v~~  369 (586)
                                  +.  +           .++-.+|..-|-.  ++       ...+.......+.+.|.++..+ ..++.
T Consensus       191 ~~~~~~~l~d~~~~~~~~~~~wg~~~P~~~~~~~~vWfds~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~-~~~~~  269 (500)
T 2d5b_A          191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKP-HAVFW  269 (500)
T ss_dssp             HHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHH-HHTHH
T ss_pred             HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHCCCCHHEEEECCCCCCC-CCHHH
T ss_conf             86665315002777766668876668899887777536543331556357606566503501212302344665-00577


Q ss_pred             H--HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH-
Q ss_conf             9--997226634511531101101221100000122330245677777632112345554200-012333447776532-
Q gi|254780285|r  370 V--AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQ-  445 (586)
Q Consensus       370 ~--~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~-  445 (586)
                      .  +..+|..... .++..+++ |..+|+  |||+..||+|..+|+++..|.+++||..++.. ...+..|+++..... 
T Consensus       270 ~~~~~~~~~~~~~-~~~~hg~~-l~~~G~--KMSKS~gN~i~~~ell~~~g~D~lR~~l~~~~~~~~~~~~~~~~~~~~~  345 (500)
T 2d5b_A          270 PTMLKAAGIPMYR-HLNVGGFL-LGPDGR--KMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRY  345 (500)
T ss_dssp             HHHHHHHTCCCCS-EEEEECCE-ECTTSS--CCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred             HHHHHHCCCCCCC-CEECCCCE-EEECCC--EEECCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf             6787743887774-11114644-542564--5505488738899998722359899987613787776555789999999


Q ss_pred             --CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf             --024436788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r  446 --SKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF  523 (586)
Q Consensus       446 --~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~  523 (586)
                        .--|.   +.....|+.+...+.......   +..     ..         .++..+..+...+.++.+++..+..+.
T Consensus       346 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-----~~---------~~l~~~~~~~~~~~~~~d~~~~~~a~~  405 (500)
T 2d5b_A          346 EADLADD---LGNLVQRTRAMLFRFAEGRIP---EPV-----AG---------EELAEGTGLAGRLRPLVRELKFHVALE  405 (500)
T ss_dssp             HHHCCCC---CHHHHHHHHHHHHHHSTTBCC---CCC-----CC---------GGGGGGGGHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHH---HHHHHHHHHHHHHHHCCCCCC---CCC-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             9999999---989999999976640267788---731-----07---------888889999999999999889999999


Q ss_pred             HHHHHHHHHHHHHHHC
Q ss_conf             9999999889998706
Q gi|254780285|r  524 YLYDLASVFHGHWSHG  539 (586)
Q Consensus       524 Yl~~La~~Fn~fY~~~  539 (586)
                      -+++++...|.|.+..
T Consensus       406 ~i~~~v~~~N~yi~~~  421 (500)
T 2d5b_A          406 EAMAYVKALNRYINEK  421 (500)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999999999999966