HHsearch results for GI: 254780285 and protein with PDBid: 2d5b_A
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.83 E-value=3e-18 Score=145.44 Aligned_cols=344 Identities=14% Similarity=0.120 Sum_probs=187.5
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
+|+.+|.-.=|-|++++|+||+|+.++.|.++|.++..||+|.-.--.+|-|..+-.-+. +.
T Consensus 2 ~k~~~it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~V~~v~g~D~~g~~I~~~a~-------~~----------- 63 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------AA----------- 63 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH-------HH-----------
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH-------HC-----------
T ss_conf 987898079988899723340587899999999999359956820862740699999999-------85-----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
|. . .+++ .+...+.+++++++|||.+|.+..-++.. ....+.+++..
T Consensus 64 ---g~--------------------~-------~~e~-~~~~~~~~~~~~~~lgi~~D~~~~t~~~~--~~~~v~~~~~~ 110 (500)
T 2d5b_A 64 ---GE--------------------D-------PKAF-VDRVSGRFKRAWDLLGIAYDDFIRTTEER--HKKVVQLVLKK 110 (500)
T ss_dssp ---TS--------------------C-------HHHH-HHHHHHHHHHHHHHTTCCCSEEEETTSHH--HHHHHHHHHHH
T ss_pred ---CC--------------------C-------HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf ---99--------------------9-------9999-99999999999999599888785369878--87789998888
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC-----------------C--CCCCCCEEEEHHHCCCCCCCC-----------------
Q ss_conf 9974985113426755565420-----------------0--024781565101102222222-----------------
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQK-----------------C--DMDRKQLLFRSTMVGDDVDRP----------------- 323 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~g~~~d~v----------------- 323 (586)
|.++|++|+......-+..+.. . ....+..++....+.+.....
T Consensus 111 l~~~G~~y~~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (500)
T 2d5b_A 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190 (500)
T ss_dssp HHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHH
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 98669831342674121254432248876420012356773773154134446666567888765175324606668888
Q ss_pred ------------CC--C-----------CCCCHHHHHHHHH--HH-------HHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ------------10--2-----------4652135688899--99-------9975225554333677761368999999
Q gi|254780285|r 324 ------------LL--K-----------SDGSYTYFAADLA--YF-------KCKYERGFDNMIYVMGSDHSGYVKRLEA 369 (586)
Q Consensus 324 ------------l~--r-----------sDGt~~Y~t~DiA--~~-------~~k~e~~~d~~iyVv~~~Q~~h~~~v~~ 369 (586)
+. + .++-.+|..-|-. ++ ...+.......+.+.|.++..+ ..++.
T Consensus 191 ~~~~~~~l~d~~~~~~~~~~~wg~~~P~~~~~~~~vWfds~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~-~~~~~ 269 (500)
T 2d5b_A 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKP-HAVFW 269 (500)
T ss_dssp HHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHH-HHTHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHCCCCHHEEEECCCCCCC-CCHHH
T ss_conf 86665315002777766668876668899887777536543331556357606566503501212302344665-00577
Q ss_pred H--HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH-
Q ss_conf 9--997226634511531101101221100000122330245677777632112345554200-012333447776532-
Q gi|254780285|r 370 V--AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQ- 445 (586)
Q Consensus 370 ~--~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~- 445 (586)
. +..+|..... .++..+++ |..+|+ |||+..||+|..+|+++..|.+++||..++.. ...+..|+++.....
T Consensus 270 ~~~~~~~~~~~~~-~~~~hg~~-l~~~G~--KMSKS~gN~i~~~ell~~~g~D~lR~~l~~~~~~~~~~~~~~~~~~~~~ 345 (500)
T 2d5b_A 270 PTMLKAAGIPMYR-HLNVGGFL-LGPDGR--KMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRY 345 (500)
T ss_dssp HHHHHHHTCCCCS-EEEEECCE-ECTTSS--CCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred HHHHHHCCCCCCC-CEECCCCE-EEECCC--EEECCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 6787743887774-11114644-542564--5505488738899998722359899987613787776555789999999
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf --024436788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 446 --SKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 446 --~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
.--|. +.....|+.+...+....... +.. .. .++..+..+...+.++.+++..+..+.
T Consensus 346 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-----~~---------~~l~~~~~~~~~~~~~~d~~~~~~a~~ 405 (500)
T 2d5b_A 346 EADLADD---LGNLVQRTRAMLFRFAEGRIP---EPV-----AG---------EELAEGTGLAGRLRPLVRELKFHVALE 405 (500)
T ss_dssp HHHCCCC---CHHHHHHHHHHHHHHSTTBCC---CCC-----CC---------GGGGGGGGHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHCCCCCC---CCC-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999---989999999976640267788---731-----07---------888889999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999889998706
Q gi|254780285|r 524 YLYDLASVFHGHWSHG 539 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~ 539 (586)
-+++++...|.|.+..
T Consensus 406 ~i~~~v~~~N~yi~~~ 421 (500)
T 2d5b_A 406 EAMAYVKALNRYINEK 421 (500)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999966