HHsearch results for GI: 254780285 and protein with PDBid: 2ja2_A
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=99.12 E-value=6.9e-09 Score=79.79 Aligned_cols=276 Identities=22% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 443224411777778568999999998506664102014775314------55567898753222102450006601102
Q gi|254780285|r 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPEGYYP 202 (586)
Q Consensus 129 SpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e~~~~ 202 (586)
-|+|||+||+||+|+|++..-+||- .-|-=+.| +.|.-.. ...+...+.|...++ ++.+.. .+. .
T Consensus 12 APsPtG~lHiG~~rtal~n~~~Ak~--~~g~fiLR---ieDtD~~R~~~~~~~~I~~~l~wlgl~~--De~~~~-~g~-~ 82 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFR---IEDTDAQRDSEESYLALLDALRWLGLDW--DEGPEV-GGP-Y 82 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCTTTCCHHHHHHHHHHHHHHTCCC--SBBTTT-BCT-T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCC-CCC-C
T ss_conf 8798973128999999999999998--29989998---7889987488899999999999869987--768676-888-8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf 4100001278888875764134302----3799999997899887545558-8708752100015887301045799999
Q gi|254780285|r 203 GVYLKHVGKELADKYSSELLNFPEE----KWLPIVKDYSVQAMMKIIRDDL-KALNIQHDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 203 ~~y~~~~~~e~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~l-~~l~i~fD~~~~Es~~~~~~~~~i~~~i 277 (586)
+.|......+.+.++..++.+..-. -..+.+.. .+... ..-...+|. .+ .....+..
T Consensus 83 ~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~---------~~~~~~~~~~~~y~~---~~------~~~~~~~~ 144 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---------RHVAAGRNPKLGYDN---FD------RHLTDAQR 144 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHH---------HHHHTTCCTTSCCCC---GG------GGCCHHHH
T ss_pred CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHCCCCCCCCCCH---HH------CCCCHHHH
T ss_conf 7730975999999999999877997343687788887---------542104688777740---10------13444667
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997498511342675556542000247815651011022222221024652135688899999975225554333677
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~ 357 (586)
......|..+.-.+..+.. ....-+.-.+.+.+.....+ |.|+.|+||.+|| ++|...+=...+.+.+| -|
T Consensus 145 ~~~~~~g~~~viR~k~~~~-~~~~~D~v~g~~~~~~~~~~---D~vi~r~dg~PtY---~~a~vvDD~~~~ithvi--Rg 215 (498)
T 2ja2_A 145 AAYLAEGRQPVVRLRMPDD-DLAWNDLVRGPVTFAAGSVP---DFALTRASGDPLY---TLVNPCDDALMKITHVL--RG 215 (498)
T ss_dssp HHHHHTTCCCEEEECCCSS-CEEEEETTTEEEEECTTCSC---CCBSBCTTSCBCH---HHHHHHHHHHTTCCEEE--EE
T ss_pred HHHHHCCCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCC---CCEEECCCCCCCE---EECEECCCCCCCCCEEC--CC
T ss_conf 8776469980699845998-85113430420797046689---8444020585331---41545134467875550--78
Q ss_pred CCHHH-HHHH--HHHHHHHH--CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH
Q ss_conf 76136-8999--99999972--266345115311011012211000001223302456777776-------------321
Q gi|254780285|r 358 SDHSG-YVKR--LEAVAAAV--SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS 419 (586)
Q Consensus 358 ~~Q~~-h~~~--v~~~~~~l--g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~ 419 (586)
.||-. -.+| ++.++... |++.+.+.|+.. + +..+|+ |||+|.|.. ++.++-++ +|-
T Consensus 216 ~d~~~~t~~q~~l~~~l~~~~~~~~~p~~~h~~l--~-~~~~g~--klskr~~~~-~~~~~r~~GylPeAl~NyLa~LGw 289 (498)
T 2ja2_A 216 EDLLPSTPRQLALHQALIRIGVAERIPKFAHLPT--V-LGEGTK--KLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp GGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECC--E-ECSSSS--BCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECHH--H-HCCCCC--CCCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 7657741689999999985166888844875323--3-054566--254569851-399999869988999999999679
Q ss_pred ------------HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf ------------123455542000123334477765320
Q gi|254780285|r 420 ------------DSVRFMMLWRKNSELLDFDFCKVKEQS 446 (586)
Q Consensus 420 ------------~aiky~~L~~~~~~~~~Fd~d~~l~~~ 446 (586)
..+.-|+|+.=..+.-.||++++..++
T Consensus 290 s~~~~~Ei~sl~eli~~F~l~~i~ks~a~FD~~KL~wlN 328 (498)
T 2ja2_A 290 SIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALN 328 (498)
T ss_dssp CSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHH
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 888875000002034530534477777300288889999