HHsearch results for GI: 254780285 and protein with PDBid: 2ja2_A

>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=99.12  E-value=6.9e-09  Score=79.79  Aligned_cols=276  Identities=22%  Similarity=0.159  Sum_probs=127.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf             443224411777778568999999998506664102014775314------55567898753222102450006601102
Q gi|254780285|r  129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPEGYYP  202 (586)
Q Consensus       129 SpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e~~~~  202 (586)
                      -|+|||+||+||+|+|++..-+||-  .-|-=+.|   +.|.-..      ...+...+.|...++  ++.+.. .+. .
T Consensus        12 APsPtG~lHiG~~rtal~n~~~Ak~--~~g~fiLR---ieDtD~~R~~~~~~~~I~~~l~wlgl~~--De~~~~-~g~-~   82 (498)
T 2ja2_A           12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFR---IEDTDAQRDSEESYLALLDALRWLGLDW--DEGPEV-GGP-Y   82 (498)
T ss_dssp             CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCTTTCCHHHHHHHHHHHHHHTCCC--SBBTTT-BCT-T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCC-CCC-C
T ss_conf             8798973128999999999999998--29989998---7889987488899999999999869987--768676-888-8


Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf             4100001278888875764134302----3799999997899887545558-8708752100015887301045799999
Q gi|254780285|r  203 GVYLKHVGKELADKYSSELLNFPEE----KWLPIVKDYSVQAMMKIIRDDL-KALNIQHDIFISEDDFHRGDPSPIRDII  277 (586)
Q Consensus       203 ~~y~~~~~~e~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~l-~~l~i~fD~~~~Es~~~~~~~~~i~~~i  277 (586)
                      +.|......+.+.++..++.+..-.    -..+.+..         .+... ..-...+|.   .+      .....+..
T Consensus        83 ~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~---------~~~~~~~~~~~~y~~---~~------~~~~~~~~  144 (498)
T 2ja2_A           83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---------RHVAAGRNPKLGYDN---FD------RHLTDAQR  144 (498)
T ss_dssp             CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHH---------HHHHTTCCTTSCCCC---GG------GGCCHHHH
T ss_pred             CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHCCCCCCCCCCH---HH------CCCCHHHH
T ss_conf             7730975999999999999877997343687788887---------542104688777740---10------13444667


Q ss_pred             HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf             99997498511342675556542000247815651011022222221024652135688899999975225554333677
Q gi|254780285|r  278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG  357 (586)
Q Consensus       278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~  357 (586)
                      ......|..+.-.+..+.. ....-+.-.+.+.+.....+   |.|+.|+||.+||   ++|...+=...+.+.+|  -|
T Consensus       145 ~~~~~~g~~~viR~k~~~~-~~~~~D~v~g~~~~~~~~~~---D~vi~r~dg~PtY---~~a~vvDD~~~~ithvi--Rg  215 (498)
T 2ja2_A          145 AAYLAEGRQPVVRLRMPDD-DLAWNDLVRGPVTFAAGSVP---DFALTRASGDPLY---TLVNPCDDALMKITHVL--RG  215 (498)
T ss_dssp             HHHHHTTCCCEEEECCCSS-CEEEEETTTEEEEECTTCSC---CCBSBCTTSCBCH---HHHHHHHHHHTTCCEEE--EE
T ss_pred             HHHHHCCCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCC---CCEEECCCCCCCE---EECEECCCCCCCCCEEC--CC
T ss_conf             8776469980699845998-85113430420797046689---8444020585331---41545134467875550--78


Q ss_pred             CCHHH-HHHH--HHHHHHHH--CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH
Q ss_conf             76136-8999--99999972--266345115311011012211000001223302456777776-------------321
Q gi|254780285|r  358 SDHSG-YVKR--LEAVAAAV--SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS  419 (586)
Q Consensus       358 ~~Q~~-h~~~--v~~~~~~l--g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~  419 (586)
                      .||-. -.+|  ++.++...  |++.+.+.|+..  + +..+|+  |||+|.|.. ++.++-++             +|-
T Consensus       216 ~d~~~~t~~q~~l~~~l~~~~~~~~~p~~~h~~l--~-~~~~g~--klskr~~~~-~~~~~r~~GylPeAl~NyLa~LGw  289 (498)
T 2ja2_A          216 EDLLPSTPRQLALHQALIRIGVAERIPKFAHLPT--V-LGEGTK--KLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW  289 (498)
T ss_dssp             GGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECC--E-ECSSSS--BCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECHH--H-HCCCCC--CCCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf             7657741689999999985166888844875323--3-054566--254569851-399999869988999999999679


Q ss_pred             ------------HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf             ------------123455542000123334477765320
Q gi|254780285|r  420 ------------DSVRFMMLWRKNSELLDFDFCKVKEQS  446 (586)
Q Consensus       420 ------------~aiky~~L~~~~~~~~~Fd~d~~l~~~  446 (586)
                                  ..+.-|+|+.=..+.-.||++++..++
T Consensus       290 s~~~~~Ei~sl~eli~~F~l~~i~ks~a~FD~~KL~wlN  328 (498)
T 2ja2_A          290 SIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALN  328 (498)
T ss_dssp             CSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHH
T ss_pred             CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf             888875000002034530534477777300288889999