HHsearch results for GI: 254780285 and protein with PDBid: 3fnr_A

>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00  E-value=0  Score=860.49  Aligned_cols=455  Identities=32%  Similarity=0.609  Sum_probs=403.8

Q ss_pred             EEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf             88888899999999985622138876565541000223443224411777778568999999998506664102014775
Q gi|254780285|r   91 LYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDA  170 (586)
Q Consensus        91 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~  170 (586)
                      +.|+++|+.+++++++.++.+||.+. ++++|||||||||||+|||||||+|||||||+|+|||+|+||+|+|+||||||
T Consensus         1 ~~L~~~~l~~~~~~~l~~~~~~g~~~-~~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~   79 (464)
T 3fnr_A            1 MSLSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA   79 (464)
T ss_dssp             --CCHHHHHHHHHHHHHSGGGTTCCC-CCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred             CEECHHHHHHHHHHHHHCHHHCCCCC-CCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf             97779999999999995815228667-88987999755999898752520041699999999999869927899987885


Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             31455567898753222102450006601102410000127888887576413430237999999978998875455588
Q gi|254780285|r  171 GAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK  250 (586)
Q Consensus       171 G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~  250 (586)
                      |+|||++++++..+..+.....+.+.++..|++.+..+.+++..++..+....   +.....++++.++.+++.++++|.
T Consensus        80 G~Q~g~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~l~~~~~~~~  156 (464)
T 3fnr_A           80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFS---EENIPSLADWAKDKMLVLIKQNLE  156 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCS---GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99999999999998555530455210455424666668999999987775311---556999999999999999998799


Q ss_pred             HCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf             70875210001588730104579999999997498511342675556542000247815651011022222221024652
Q gi|254780285|r  251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGS  330 (586)
Q Consensus       251 ~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt  330 (586)
                      ++|++||.|.+||+++.    .+..+++.|.++|.+++                +++++|+..+..|++.|++++|||||
T Consensus       157 ~l~v~fD~~~~ES~~~~----~~~~~~~~l~~~~~~~e----------------~~ga~~~~~~~~~d~~~~~l~ksdG~  216 (464)
T 3fnr_A          157 QAKIKIDSYVSERSYYD----ALNATLESLKEHKGIYE----------------QEGKIWLASSQKGDEKDRVIIREDGR  216 (464)
T ss_dssp             HTTCCCSCEEEGGGGST----THHHHHHHHHHTTCEEE----------------ETTEEEECGGGGTCSSCEEEECTTSC
T ss_pred             HHCCEEEEEHHHHHHHH----HHHHHHHHHHHCCCEEE----------------ECCCEEEECCCCCCCCCCEEEECCCC
T ss_conf             70851000011578887----79999998864598685----------------37987750110378878527960797


Q ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf             13568889999997522555433367776136899999999972266345115311011012211000001223302456
Q gi|254780285|r  331 YTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL  410 (586)
Q Consensus       331 ~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l  410 (586)
                      ++|.|+||||+++|+++++|++|||+|++|.+||+|++.+++.+|+......++.++++.+.++|++.|||||+|+++++
T Consensus       217 ~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l  296 (464)
T 3fnr_A          217 GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILM  296 (464)
T ss_dssp             BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBH
T ss_pred             CCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCH
T ss_conf             41014589999998722897289998660466776799999975677556405898888997698023441478883559


Q ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf             77777632112345554200012333447776532024436788888888999987533200246832234223552114
Q gi|254780285|r  411 RHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESE  490 (586)
Q Consensus       411 ~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~  490 (586)
                      +||+++||++|+||++|++++.++|+|||++++..++|||+||||||||||||||||++....+...       . ....
T Consensus       297 ~dll~evg~~airy~~L~~~~~~~~~Fd~~~~~~~~~gn~~~YiqYa~aR~~SIlrk~~~~~~~~~~-------~-~~~~  368 (464)
T 3fnr_A          297 SDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMK-------A-DLQS  368 (464)
T ss_dssp             HHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTT-------C-CCTT
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C-CCCC
T ss_conf             9999997477876665314655555346687754132214789999999999999971534331112-------5-5421


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf             99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r  491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII  570 (586)
Q Consensus       491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL  570 (586)
                      +++.|++|+++|++||++|.+|+++++||+||+|||+||++||+||++|      +|+.++++   .+||+||.++++||
T Consensus       369 l~~~e~~L~~~l~~fp~vl~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~------~Vl~~~~~---~~RL~L~~~~~~vl  439 (464)
T 3fnr_A          369 LNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNEN------KVVGSANE---NDLLKLFSLVALSI  439 (464)
T ss_dssp             CCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHC------CCTTSTTH---HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC------CCCCCCCH---HHHHHHHHHHHHHH
T ss_conf             8988999999998489999999983781489999999999999887138------98999799---99999999999999


Q ss_pred             HHHHHHCCCCCCCCCC
Q ss_conf             9987315879854459
Q gi|254780285|r  571 NSGLNIIGVESPNEMS  586 (586)
Q Consensus       571 ~~~L~LLGI~~perM~  586 (586)
                      ++||+||||+|||||.
T Consensus       440 ~~gl~LLGI~~~erM~  455 (464)
T 3fnr_A          440 KTAFSLMGIEAKNKME  455 (464)
T ss_dssp             HHHHHHTTCCCCSCC-
T ss_pred             HHHHHCCCCCCHHHHC
T ss_conf             9852202989267636