HHsearch results for GI: 254780285 and protein with PDBid: 3fnr_A
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=0 Score=860.49 Aligned_cols=455 Identities=32% Similarity=0.609 Sum_probs=403.8
Q ss_pred EEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 88888899999999985622138876565541000223443224411777778568999999998506664102014775
Q gi|254780285|r 91 LYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDA 170 (586)
Q Consensus 91 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~ 170 (586)
+.|+++|+.+++++++.++.+||.+. ++++|||||||||||+|||||||+|||||||+|+|||+|+||+|+|+||||||
T Consensus 1 ~~L~~~~l~~~~~~~l~~~~~~g~~~-~~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCC-CCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHCHHHCCCCC-CCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 97779999999999995815228667-88987999755999898752520041699999999999869927899987885
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31455567898753222102450006601102410000127888887576413430237999999978998875455588
Q gi|254780285|r 171 GAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK 250 (586)
Q Consensus 171 G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~ 250 (586)
|+|||++++++..+..+.....+.+.++..|++.+..+.+++..++..+.... +.....++++.++.+++.++++|.
T Consensus 80 G~Q~g~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ 156 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFS---EENIPSLADWAKDKMLVLIKQNLE 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCS---GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998555530455210455424666668999999987775311---556999999999999999998799
Q ss_pred HCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf 70875210001588730104579999999997498511342675556542000247815651011022222221024652
Q gi|254780285|r 251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGS 330 (586)
Q Consensus 251 ~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt 330 (586)
++|++||.|.+||+++. .+..+++.|.++|.+++ +++++|+..+..|++.|++++|||||
T Consensus 157 ~l~v~fD~~~~ES~~~~----~~~~~~~~l~~~~~~~e----------------~~ga~~~~~~~~~d~~~~~l~ksdG~ 216 (464)
T 3fnr_A 157 QAKIKIDSYVSERSYYD----ALNATLESLKEHKGIYE----------------QEGKIWLASSQKGDEKDRVIIREDGR 216 (464)
T ss_dssp HTTCCCSCEEEGGGGST----THHHHHHHHHHTTCEEE----------------ETTEEEECGGGGTCSSCEEEECTTSC
T ss_pred HHCCEEEEEHHHHHHHH----HHHHHHHHHHHCCCEEE----------------ECCCEEEECCCCCCCCCCEEEECCCC
T ss_conf 70851000011578887----79999998864598685----------------37987750110378878527960797
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 13568889999997522555433367776136899999999972266345115311011012211000001223302456
Q gi|254780285|r 331 YTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 331 ~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
++|.|+||||+++|+++++|++|||+|++|.+||+|++.+++.+|+......++.++++.+.++|++.|||||+|+++++
T Consensus 217 ~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l 296 (464)
T 3fnr_A 217 GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILM 296 (464)
T ss_dssp BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBH
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCH
T ss_conf 41014589999998722897289998660466776799999975677556405898888997698023441478883559
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200012333447776532024436788888888999987533200246832234223552114
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~ 490 (586)
+||+++||++|+||++|++++.++|+|||++++..++|||+||||||||||||||||++....+... . ....
T Consensus 297 ~dll~evg~~airy~~L~~~~~~~~~Fd~~~~~~~~~gn~~~YiqYa~aR~~SIlrk~~~~~~~~~~-------~-~~~~ 368 (464)
T 3fnr_A 297 SDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMK-------A-DLQS 368 (464)
T ss_dssp HHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTT-------C-CCTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C-CCCC
T ss_conf 9999997477876665314655555346687754132214789999999999999971534331112-------5-5421
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL 570 (586)
+++.|++|+++|++||++|.+|+++++||+||+|||+||++||+||++| +|+.++++ .+||+||.++++||
T Consensus 369 l~~~e~~L~~~l~~fp~vl~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~------~Vl~~~~~---~~RL~L~~~~~~vl 439 (464)
T 3fnr_A 369 LNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNEN------KVVGSANE---NDLLKLFSLVALSI 439 (464)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHC------CCTTSTTH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC------CCCCCCCH---HHHHHHHHHHHHHH
T ss_conf 8988999999998489999999983781489999999999999887138------98999799---99999999999999
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 9987315879854459
Q gi|254780285|r 571 NSGLNIIGVESPNEMS 586 (586)
Q Consensus 571 ~~~L~LLGI~~perM~ 586 (586)
++||+||||+|||||.
T Consensus 440 ~~gl~LLGI~~~erM~ 455 (464)
T 3fnr_A 440 KTAFSLMGIEAKNKME 455 (464)
T ss_dssp HHHHHHTTCCCCSCC-
T ss_pred HHHHHCCCCCCHHHHC
T ss_conf 9852202989267636