HHsearch results for GI: 254780285 and protein with PDBid: 3h99_A
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.86 E-value=2.9e-19 Score=152.54 Aligned_cols=351 Identities=18% Similarity=0.189 Sum_probs=202.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 38876565541000223443224411777778568999999998506664102014775314555678987532221024
Q gi|254780285|r 112 YGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYN 191 (586)
Q Consensus 112 yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~ 191 (586)
-|+. +...||++|=..-|+||+++|+||+|+.++.|.++|-++..||+|.=.--.+|.|+.+-.-+.. +
T Consensus 10 ~~~~-~~~~~~~~vt~~~P~~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~v~~~~G~D~~g~~i~~~a~~------~---- 78 (560)
T 3h99_A 10 HGSM-TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ------L---- 78 (560)
T ss_dssp --------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH------H----
T ss_pred CCCC-CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHHH------C----
T ss_conf 5666-5577887997699888896113255879999999999994699545507045573999999998------5----
Q ss_pred CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHH
Q ss_conf 50006601102410000127888887576413430237999999978998875455588708752100015887301045
Q gi|254780285|r 192 NDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPS 271 (586)
Q Consensus 192 ~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~ 271 (586)
|.- .+ ++ .+...+.+++++++|||.+|.+..-++-. ...
T Consensus 79 -----------g~~----p~-----------------------e~-~~~~~~~~~~~~~~l~i~~d~~~~T~~~~--~~~ 117 (560)
T 3h99_A 79 -----------GIT----PE-----------------------QM-IGEMSQEHQTDFAGFNISYDNYHSTHSEE--NRQ 117 (560)
T ss_dssp -----------TSC----HH-----------------------HH-HHHHHHHHHHHHHHTTCCCSEEEESSSHH--HHH
T ss_pred -----------CCC----HH-----------------------HH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHH
T ss_conf -----------999----99-----------------------99-99999999999997498278886179889--999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC-------------------------------CCCCC--C---------------
Q ss_conf 79999999997498511342675556-------------------------------54200--0---------------
Q gi|254780285|r 272 PIRDIIDNLARQGYVYEGILPPPKSK-------------------------------TTQKC--D--------------- 303 (586)
Q Consensus 272 ~i~~~i~~l~~~g~~~e~~~~~~~~~-------------------------------~~~~~--~--------------- 303 (586)
.+.+++.+|.++|++|.+.....-+. +.... +
T Consensus 118 ~v~~if~~L~~~G~iy~~~~~~~~~p~~~~~l~d~~v~g~~~~~~~~~~~gd~~e~~g~~~~~~eli~~~~~~~~~~~~~ 197 (560)
T 3h99_A 118 LSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVM 197 (560)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEE
T ss_pred HHHHHHHHHHHCCCEECEEEEEEECCCCCCCCCHHHEEEECCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCE
T ss_conf 99999999997797202035788606777356225244135777761006886632587698577307755555577610
Q ss_pred CCCCCEEEEHHHCCCC--------------------------CCC-----------CCCCCCCCHHHHHHHHH--H----
Q ss_conf 2478156510110222--------------------------222-----------21024652135688899--9----
Q gi|254780285|r 304 MDRKQLLFRSTMVGDD--------------------------VDR-----------PLLKSDGSYTYFAADLA--Y---- 340 (586)
Q Consensus 304 ~~~~~~~~~~~~~g~~--------------------------~d~-----------vl~rsDGt~~Y~t~DiA--~---- 340 (586)
......+++.....+. .|. ++-..++...|.--|-. |
T Consensus 198 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~~~g~~~~~~~~~~~~vW~d~~~~~~~~~ 277 (560)
T 3h99_A 198 RDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSF 277 (560)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHH
T ss_pred EECCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 46411122317899999997643742488999998766438887787887676898788789861365036211136665
Q ss_pred --HHHHHH-----------CCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCC
Q ss_conf --999752-----------2555433367776136-89999999997226634511531101101221100000122330
Q gi|254780285|r 341 --FKCKYE-----------RGFDNMIYVMGSDHSG-YVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGD 406 (586)
Q Consensus 341 --~~~k~e-----------~~~d~~iyVv~~~Q~~-h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~ 406 (586)
...... ...-..++++|.|+.- |.-.....+...+.+..+ .++..+++. .+|+ |||+..||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Di~~fh~~~~~a~l~~~~~~~~~-~i~~~g~l~--~~G~--KMSKS~GN 352 (560)
T 3h99_A 278 KNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPS-NLFVHGYVT--VNGA--KMSKSRGT 352 (560)
T ss_dssp HHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCS-EEEEECCEE--ETTE--ECCTTTTC
T ss_pred HCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEEE--CCCC--CCCCCCCC
T ss_conf 313576665055765045667774155447730003998999998605568983-675300450--4888--60246886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 24567777763211234555420001--23334477765320----2443678888888899998753320024683223
Q gi|254780285|r 407 FITLRHVVDEVGSDSVRFMMLWRKNS--ELLDFDFCKVKEQS----KENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 (586)
Q Consensus 407 ~v~l~dll~evg~~aiky~~L~~~~~--~~~~Fd~d~~l~~~----~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~ 480 (586)
+|...|++++.|.+++||++++..+. .+..|+++.+.... -.+-+-++ .|+.+...+......
T Consensus 353 ~i~p~~~i~~ygaD~lR~~ll~~~~~~~~d~~fs~~~~~~~~n~~~~~~~~n~~----~~~~~~~~~~~~~~~------- 421 (560)
T 3h99_A 353 FIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA----SRNAGFINKRFDGVL------- 421 (560)
T ss_dssp CCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH----HTTHHHHHHHSTTBC-------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCC-------
T ss_conf 788999987418189999999856777777666899999999999985157899----988877764058854-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 42235521149989999999984218999999985281279999999999889998706
Q gi|254780285|r 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 481 ~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
+. ... ...++..+......+.++.++++++..++.+++++...|.|-+..
T Consensus 422 ~~------~~~---~~~~~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~i~~~N~Yi~~~ 471 (560)
T 3h99_A 422 AS------ELA---DPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQ 471 (560)
T ss_dssp CS------SCS---CHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 41------012---477899999999999999986699999999999999999999835