HHsearch results for GI: 254780285 and protein with PDBid: 3kfl_A
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.86 E-value=9.1e-19 Score=149.09 Aligned_cols=399 Identities=15% Similarity=0.200 Sum_probs=227.0
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88765655410002234432244117777785689999999985066641020147753145556789875322210245
Q gi|254780285|r 113 GRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNN 192 (586)
Q Consensus 113 G~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~ 192 (586)
|...+.+.++.+|+-.=|.||+++|+||+|+.++.|+++|-++..||+|.-..-.+|-|+.+..-+. +
T Consensus 18 ~~~~~~~~~~~~itt~~pY~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~hG~~i~~~A~-------~----- 85 (564)
T 3kfl_A 18 GPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAA-------K----- 85 (564)
T ss_dssp ------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHH-------H-----
T ss_pred CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------H-----
T ss_conf 9977677998899489988888523566688999999999999369970340836876199999999-------8-----
Q ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHH
Q ss_conf 00066011024100001278888875764134302379999999789988754555887087521000158873010457
Q gi|254780285|r 193 DSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSP 272 (586)
Q Consensus 193 ~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~ 272 (586)
+ |.. .+++ .+...+.+++++++|||.||.+..-++- .....
T Consensus 86 -----~----g~~----~~e~------------------------~~~~~~~~~~~~~~lgi~~D~~~~T~~~--~~~~~ 126 (564)
T 3kfl_A 86 -----Q----GVS----PMDF------------------------TTSVSSEFKQCFQEMNYDMNYFIRTTNP--THEKL 126 (564)
T ss_dssp -----T----TCC----HHHH------------------------HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHH
T ss_pred -----C----CCC----HHHH------------------------HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHH
T ss_conf -----5----999----9999------------------------9999999999999939817878215988--99999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------------------------CCCCCCEEEEHHHCCCC-----
Q ss_conf 999999999749851134267555654200----------------------------02478156510110222-----
Q gi|254780285|r 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKC----------------------------DMDRKQLLFRSTMVGDD----- 319 (586)
Q Consensus 273 i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~g~~----- 319 (586)
+.+++.+|.++|++|++.....-+..+... ..+....+++.....+.
T Consensus 127 v~~~f~~l~~~g~i~~~~~~~~~~~~~~~~l~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 206 (564)
T 3kfl_A 127 VQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF 206 (564)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCEEEEECCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHHHHH
T ss_conf 99999971215207960331011113422032777522121013333212356875434145750100245699999999
Q ss_pred ------------------------CCCCCCCC------CCC--------HHHHHHHHH--HHH---HHHH----------
Q ss_conf ------------------------22221024------652--------135688899--999---9752----------
Q gi|254780285|r 320 ------------------------VDRPLLKS------DGS--------YTYFAADLA--YFK---CKYE---------- 346 (586)
Q Consensus 320 ------------------------~d~vl~rs------DGt--------~~Y~t~DiA--~~~---~k~e---------- 346 (586)
.|..+-+. =|. ..|.=-|.. |.- +...
T Consensus 207 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~~WGipvP~~~~~~~~vw~da~~~~~s~~~~~~~~~g~~~~~~~ 286 (564)
T 3kfl_A 207 HDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDED 286 (564)
T ss_dssp HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSS
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 84877547378888888876300120256676778899887578899855899616676778876530123566444401
Q ss_pred ----CCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ----25554333677761368-9999999997226634511531101101221100000122330245677777632112
Q gi|254780285|r 347 ----RGFDNMIYVMGSDHSGY-VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDS 421 (586)
Q Consensus 347 ----~~~d~~iyVv~~~Q~~h-~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~a 421 (586)
...-..++++|.|+-.+ .-..-..+...+...++ .++..+++.+ ||+ |||+-.||+|..+|++++.|.++
T Consensus 287 ~~~~~~~p~~i~~~G~D~~~fh~~~~~~~~~~~~~~~P~-~~~~~~~l~~--dg~--KMSKS~GN~i~~~d~i~~ygaD~ 361 (564)
T 3kfl_A 287 HHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPE-RLVSHGWWTK--DHK--KISKSLGNAFDPVEKAKEFGIDA 361 (564)
T ss_dssp STTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCS-CEEEECCEEE--TTE--ECCTTTTCCCCHHHHHHHHCHHH
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH--HHH--HHHHCCCCCCCHHHHHHCCCHHH
T ss_conf 666254864023436662001145888887762258996-1100034312--034--32002588788556543189899
Q ss_pred HHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3455542000-123334477765320244367888888889999875332002468322342235521149989999999
Q gi|254780285|r 422 VRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIV 500 (586)
Q Consensus 422 iky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~ 500 (586)
+||++++..+ ..+..|+++........+.+--+.-..-|+.+...+... ..+.....++....++.
T Consensus 362 lR~~l~~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~-------------~~~~~~~~~~~d~~il~ 428 (564)
T 3kfl_A 362 LKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNG-------------MWPEPAEYSESDKTLIA 428 (564)
T ss_dssp HHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-------------BCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCCCHHHHHHHHHHHHH
T ss_conf 99999962986666420168999999888887788999999987652168-------------88851221157887788
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHH---------
Q ss_conf 9842189999999852812799999999998899987068666665435787899999999-999999999---------
Q gi|254780285|r 501 HLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQ-LVHAVASII--------- 570 (586)
Q Consensus 501 ~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~-L~~a~~~vL--------- 570 (586)
.+..+...+..+.+++..+..+.-+++++...|.|++..+ | -+... ++++...+=|. +..+++.++
T Consensus 429 ~~~~~~~~v~~~~e~~~f~~a~~~i~~~~~~~N~yi~~~~--p-w~l~k-~d~~~~~~vl~~~~~~l~~l~~ll~P~~P~ 504 (564)
T 3kfl_A 429 SLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA--P-WKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQ 504 (564)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC--H-HHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-HHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998999999999867999999999999999999999769--8-64426-899999999999999999999999989769
Q ss_pred --HHHHHHCCCCCCCC
Q ss_conf --99873158798544
Q gi|254780285|r 571 --NSGLNIIGVESPNE 584 (586)
Q Consensus 571 --~~~L~LLGI~~per 584 (586)
+..+..||++..++
T Consensus 505 ~ae~i~~~Lg~~~~~~ 520 (564)
T 3kfl_A 505 KAKEIMDALGVPEAAR 520 (564)
T ss_dssp HHHHHHHHHTCCGGGS
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999999859996334