HHsearch results for GI: 254780285 and protein with PDBid: 3kfl_A

>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.86  E-value=9.1e-19  Score=149.09  Aligned_cols=399  Identities=15%  Similarity=0.200  Sum_probs=227.0

Q ss_pred             CCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf             88765655410002234432244117777785689999999985066641020147753145556789875322210245
Q gi|254780285|r  113 GRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNN  192 (586)
Q Consensus       113 G~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~  192 (586)
                      |...+.+.++.+|+-.=|.||+++|+||+|+.++.|+++|-++..||+|.-..-.+|-|+.+..-+.       +     
T Consensus        18 ~~~~~~~~~~~~itt~~pY~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~hG~~i~~~A~-------~-----   85 (564)
T 3kfl_A           18 GPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAA-------K-----   85 (564)
T ss_dssp             ------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHH-------H-----
T ss_pred             CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------H-----
T ss_conf             9977677998899489988888523566688999999999999369970340836876199999999-------8-----


Q ss_pred             CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHH
Q ss_conf             00066011024100001278888875764134302379999999789988754555887087521000158873010457
Q gi|254780285|r  193 DSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSP  272 (586)
Q Consensus       193 ~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~  272 (586)
                           +    |..    .+++                        .+...+.+++++++|||.||.+..-++-  .....
T Consensus        86 -----~----g~~----~~e~------------------------~~~~~~~~~~~~~~lgi~~D~~~~T~~~--~~~~~  126 (564)
T 3kfl_A           86 -----Q----GVS----PMDF------------------------TTSVSSEFKQCFQEMNYDMNYFIRTTNP--THEKL  126 (564)
T ss_dssp             -----T----TCC----HHHH------------------------HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHH
T ss_pred             -----C----CCC----HHHH------------------------HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHH
T ss_conf             -----5----999----9999------------------------9999999999999939817878215988--99999


Q ss_pred             HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------------------------CCCCCCEEEEHHHCCCC-----
Q ss_conf             999999999749851134267555654200----------------------------02478156510110222-----
Q gi|254780285|r  273 IRDIIDNLARQGYVYEGILPPPKSKTTQKC----------------------------DMDRKQLLFRSTMVGDD-----  319 (586)
Q Consensus       273 i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~g~~-----  319 (586)
                      +.+++.+|.++|++|++.....-+..+...                            ..+....+++.....+.     
T Consensus       127 v~~~f~~l~~~g~i~~~~~~~~~~~~~~~~l~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~  206 (564)
T 3kfl_A          127 VQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF  206 (564)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHH
T ss_pred             HHHHHHHHCCCCCEEEECCEEEEECCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHHHHH
T ss_conf             99999971215207960331011113422032777522121013333212356875434145750100245699999999


Q ss_pred             ------------------------CCCCCCCC------CCC--------HHHHHHHHH--HHH---HHHH----------
Q ss_conf             ------------------------22221024------652--------135688899--999---9752----------
Q gi|254780285|r  320 ------------------------VDRPLLKS------DGS--------YTYFAADLA--YFK---CKYE----------  346 (586)
Q Consensus       320 ------------------------~d~vl~rs------DGt--------~~Y~t~DiA--~~~---~k~e----------  346 (586)
                                              .|..+-+.      =|.        ..|.=-|..  |.-   +...          
T Consensus       207 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~~WGipvP~~~~~~~~vw~da~~~~~s~~~~~~~~~g~~~~~~~  286 (564)
T 3kfl_A          207 HDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDED  286 (564)
T ss_dssp             HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSS
T ss_pred             HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf             84877547378888888876300120256676778899887578899855899616676778876530123566444401


Q ss_pred             ----CCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             ----25554333677761368-9999999997226634511531101101221100000122330245677777632112
Q gi|254780285|r  347 ----RGFDNMIYVMGSDHSGY-VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDS  421 (586)
Q Consensus       347 ----~~~d~~iyVv~~~Q~~h-~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~a  421 (586)
                          ...-..++++|.|+-.+ .-..-..+...+...++ .++..+++.+  ||+  |||+-.||+|..+|++++.|.++
T Consensus       287 ~~~~~~~p~~i~~~G~D~~~fh~~~~~~~~~~~~~~~P~-~~~~~~~l~~--dg~--KMSKS~GN~i~~~d~i~~ygaD~  361 (564)
T 3kfl_A          287 HHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPE-RLVSHGWWTK--DHK--KISKSLGNAFDPVEKAKEFGIDA  361 (564)
T ss_dssp             STTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCS-CEEEECCEEE--TTE--ECCTTTTCCCCHHHHHHHHCHHH
T ss_pred             HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH--HHH--HHHHCCCCCCCHHHHHHCCCHHH
T ss_conf             666254864023436662001145888887762258996-1100034312--034--32002588788556543189899


Q ss_pred             HHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf             3455542000-123334477765320244367888888889999875332002468322342235521149989999999
Q gi|254780285|r  422 VRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIV  500 (586)
Q Consensus       422 iky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~  500 (586)
                      +||++++..+ ..+..|+++........+.+--+.-..-|+.+...+...             ..+.....++....++.
T Consensus       362 lR~~l~~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~-------------~~~~~~~~~~~d~~il~  428 (564)
T 3kfl_A          362 LKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNG-------------MWPEPAEYSESDKTLIA  428 (564)
T ss_dssp             HHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-------------BCCCCCCCCHHHHHHHH
T ss_pred             HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCCCHHHHHHHHHHHHH
T ss_conf             99999962986666420168999999888887788999999987652168-------------88851221157887788


Q ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHH---------
Q ss_conf             9842189999999852812799999999998899987068666665435787899999999-999999999---------
Q gi|254780285|r  501 HLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQ-LVHAVASII---------  570 (586)
Q Consensus       501 ~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~-L~~a~~~vL---------  570 (586)
                      .+..+...+..+.+++..+..+.-+++++...|.|++..+  | -+... ++++...+=|. +..+++.++         
T Consensus       429 ~~~~~~~~v~~~~e~~~f~~a~~~i~~~~~~~N~yi~~~~--p-w~l~k-~d~~~~~~vl~~~~~~l~~l~~ll~P~~P~  504 (564)
T 3kfl_A          429 SLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA--P-WKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQ  504 (564)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC--H-HHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-HHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             8998999999999867999999999999999999999769--8-64426-899999999999999999999999989769


Q ss_pred             --HHHHHHCCCCCCCC
Q ss_conf             --99873158798544
Q gi|254780285|r  571 --NSGLNIIGVESPNE  584 (586)
Q Consensus       571 --~~~L~LLGI~~per  584 (586)
                        +..+..||++..++
T Consensus       505 ~ae~i~~~Lg~~~~~~  520 (564)
T 3kfl_A          505 KAKEIMDALGVPEAAR  520 (564)
T ss_dssp             HHHHHHHHHTCCGGGS
T ss_pred             HHHHHHHHCCCCCCCC
T ss_conf             9999999859996334