Query gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 586
No_of_seqs 146 out of 2930
Neff 7.5
Searched_HMMs 23785
Date Tue May 24 14:09:50 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780285.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1f7u_A Arginyl-tRNA synthetase 100.0 0 0 999.1 45.3 532 1-585 29-607 (607)
2 2zue_A Arginyl-tRNA synthetase 100.0 0 0 986.2 48.9 550 1-585 3-629 (629)
3 1iq0_A Arginyl-tRNA synthetase 100.0 0 0 938.2 41.0 526 7-585 2-592 (592)
4 3fnr_A Arginyl-tRNA synthetase 100.0 0 0 860.5 40.3 455 91-586 1-455 (464)
5 1irx_A Lysyl-tRNA synthetase; 99.9 8.2E-24 3.5E-28 184.5 11.2 295 118-441 17-321 (523)
6 3gdz_A Arginyl-tRNA synthetase 99.9 1.2E-21 5E-26 169.3 12.5 106 1-113 4-109 (109)
7 3kfl_A Methionyl-tRNA syntheta 99.9 9.1E-19 3.8E-23 149.1 25.8 399 113-584 18-520 (564)
8 3h99_A Methionyl-tRNA syntheta 99.9 2.9E-19 1.2E-23 152.5 22.1 351 112-539 10-471 (560)
9 2x1l_A Methionyl-tRNA syntheta 99.8 5E-18 2.1E-22 143.9 25.5 351 118-539 9-439 (524)
10 2csx_A Methionyl-tRNA syntheta 99.8 9.3E-18 3.9E-22 142.0 23.7 348 119-539 3-419 (497)
11 2d5b_A Methionyl-tRNA syntheta 99.8 3E-18 1.3E-22 145.4 20.4 344 120-539 2-421 (500)
12 1rqg_A Methionyl-tRNA syntheta 99.8 1E-16 4.4E-21 134.6 25.7 351 122-540 3-474 (722)
13 3c8z_A Cysteinyl-tRNA syntheta 99.8 1.6E-16 6.9E-21 133.3 24.3 316 120-535 37-391 (414)
14 1gax_A Valrs, valyl-tRNA synth 99.7 5E-15 2.1E-19 122.8 20.1 163 354-538 485-651 (862)
15 1ffy_A Isoleucyl-tRNA syntheta 99.7 4.2E-14 1.8E-18 116.4 22.5 170 353-538 551-722 (917)
16 1li5_A Cysrs, cysteinyl-tRNA s 99.6 4.4E-12 1.8E-16 102.2 25.8 349 118-579 18-393 (461)
17 1wkb_A Leucyl-tRNA synthetase; 99.5 4.7E-10 2E-14 88.0 30.5 129 383-537 638-768 (810)
18 1ile_A Ilers, isoleucyl-tRNA s 99.5 1.7E-11 7E-16 98.1 21.8 172 352-537 546-720 (821)
19 1wz2_A Leucyl-tRNA synthetase; 99.5 2.8E-10 1.2E-14 89.5 26.7 121 394-537 647-768 (967)
20 3al0_C Glutamyl-tRNA(Gln) amid 99.4 2.8E-12 1.2E-16 103.6 13.6 126 306-445 279-428 (592)
21 2o5r_A Glutamyl-tRNA synthetas 99.4 2.1E-11 8.8E-16 97.4 15.7 278 127-445 17-332 (481)
22 3afh_A Glutamyl-tRNA synthetas 99.3 5.2E-11 2.2E-15 94.7 13.6 237 124-445 26-324 (488)
23 1j09_A Glutamyl-tRNA synthetas 99.3 3.3E-10 1.4E-14 89.1 15.3 273 125-445 3-313 (468)
24 1nzj_A Hypothetical protein YA 99.3 9E-11 3.8E-15 93.0 11.9 200 125-407 7-236 (298)
25 2ja2_A Glutamyl-tRNA synthetas 99.1 6.9E-09 2.9E-13 79.8 16.1 276 129-446 12-328 (498)
26 3aii_A Glutamyl-tRNA synthetas 99.0 1.7E-08 7.2E-13 77.0 14.4 77 321-408 262-338 (553)
27 2cfo_A Glutamyl-tRNA synthetas 98.9 1.4E-08 5.9E-13 77.6 11.4 152 281-445 136-318 (492)
28 1qtq_A GLNRS, protein (glutami 98.8 2.5E-07 1.1E-11 68.8 12.9 77 321-407 199-275 (553)
29 2hz7_A Glutaminyl-tRNA synthet 98.7 5E-07 2.1E-11 66.7 13.3 49 96-154 49-97 (851)
30 2v0c_A Aminoacyl-tRNA syntheta 98.6 1.3E-07 5.4E-12 70.9 7.5 126 397-538 635-761 (878)
31 2v0c_A Aminoacyl-tRNA syntheta 97.9 0.0005 2.1E-08 45.7 12.7 57 121-177 33-89 (878)
32 1h3f_A Tyrosyl-tRNA synthetase 96.7 0.012 5E-07 36.0 9.3 76 329-416 171-249 (432)
33 2cya_A Tyrosyl-tRNA synthetase 96.0 0.085 3.6E-06 30.0 11.5 81 327-417 159-257 (364)
34 1n3l_A Tyrosyl-tRNA synthetase 95.6 0.092 3.9E-06 29.8 8.8 62 351-417 179-241 (372)
35 2cyc_A Tyrosyl-tRNA synthetase 93.8 0.33 1.4E-05 25.9 13.3 85 327-417 162-270 (375)
36 1r6u_A Tryptophanyl-tRNA synth 89.4 0.96 4E-05 22.6 8.9 65 351-418 257-322 (437)
37 1r6t_A Tryptophanyl-tRNA synth 89.1 1 4.2E-05 22.5 8.3 65 351-418 304-369 (477)
38 2dlc_X Tyrosyl-tRNA synthetase 88.1 0.16 6.9E-06 28.0 1.7 77 329-417 166-246 (394)
39 2cyb_A Tyrosyl-tRNA synthetase 87.9 0.29 1.2E-05 26.2 2.9 76 329-417 154-232 (323)
40 3m5w_A Tryptophanyl-tRNA synth 87.8 0.19 7.9E-06 27.6 1.8 79 329-417 123-210 (322)
41 3i05_A Tryptophanyl-tRNA synth 86.2 0.29 1.2E-05 26.3 2.0 64 351-417 225-288 (395)
42 1yi8_B Tryptophanyl-tRNA synth 86.0 0.38 1.6E-05 25.4 2.6 79 329-417 146-233 (351)
43 2cyb_A Tyrosyl-tRNA synthetase 85.4 0.36 1.5E-05 25.7 2.2 43 127-175 36-78 (323)
44 3jxe_A Tryptophanyl-tRNA synth 84.1 0.4 1.7E-05 25.3 2.0 61 355-417 212-272 (392)
45 2ip1_A Tryptophanyl-tRNA synth 83.3 0.61 2.6E-05 24.0 2.7 66 350-418 249-315 (432)
46 2pid_A Tyrosyl-tRNA synthetase 82.9 0.8 3.4E-05 23.2 3.1 69 335-412 199-267 (356)
47 2ts1_A Tyrosyl-tRNA synthetase 82.7 0.81 3.4E-05 23.1 3.1 45 126-176 33-78 (419)
48 3hv0_A Tryptophanyl-tRNA synth 81.2 0.51 2.1E-05 24.6 1.6 66 350-418 220-286 (393)
49 2el7_A Tryptophanyl-tRNA synth 80.2 2.5 0.0001 19.7 8.0 79 329-417 125-213 (337)
50 2jan_A Tyrosyl-tRNA synthetase 80.0 0.82 3.5E-05 23.1 2.3 45 126-176 35-80 (432)
51 1jil_A Tyrrs, tyrosyl-tRNA syn 79.8 1.3 5.4E-05 21.7 3.3 46 125-176 34-80 (420)
52 3foc_A Tryptophanyl-tRNA synth 78.4 2.8 0.00012 19.4 8.6 64 352-418 289-353 (451)
53 2g36_A Tryptophanyl-tRNA synth 73.6 3.7 0.00016 18.5 8.2 81 329-417 137-223 (340)
54 2zp1_A Tyrosyl-tRNA synthetase 70.5 1.9 7.8E-05 20.6 2.1 73 329-417 147-222 (314)
55 3n9i_A Tryptophanyl-tRNA synth 69.5 2.9 0.00012 19.2 3.0 81 329-417 136-228 (346)
56 1y42_X Tyrosyl-tRNA synthetase 69.4 4.6 0.00019 17.9 4.8 45 126-176 67-112 (392)
57 3hzr_A Tryptophanyl-tRNA synth 67.3 5 0.00021 17.6 10.4 65 350-418 224-289 (386)
58 2j5b_A Tyrosyl-tRNA synthetase 65.2 5.5 0.00023 17.3 3.8 84 327-417 165-251 (348)
59 1iio_A Conserved hypothetical 52.2 1.3 5.7E-05 21.6 -1.3 66 1-71 6-81 (84)
60 2yy5_A Tryptophanyl-tRNA synth 49.3 6.7 0.00028 16.7 1.9 81 329-417 131-223 (348)
61 2ekd_A Hypothetical protein PH 49.2 10 0.00042 15.5 3.6 39 117-168 12-50 (207)
62 1sjq_A Polypyrimidine tract-bi 48.2 4.4 0.00019 18.0 0.8 47 120-167 3-49 (105)
63 1i6k_A TRPRS, tryptophanyl-tRN 47.7 7.9 0.00033 16.2 2.0 79 329-417 121-213 (328)
64 1d4a_A DT-diaphorase, quinone 46.8 11 0.00046 15.3 3.7 39 120-165 2-40 (273)
65 2dew_X Protein-arginine deimin 46.5 7.7 0.00032 16.3 1.8 11 120-130 97-107 (671)
66 2v7f_A RPS19, RPS19E SSU ribos 43.1 8.3 0.00035 16.1 1.6 16 271-286 96-111 (150)
67 2yxn_A Tyrosyl-tRNA synthetase 43.0 12 0.00052 14.9 4.4 59 349-412 190-248 (322)
68 3jyv_T S19E protein; eukaryoti 42.3 8.7 0.00037 15.9 1.6 13 273-285 98-110 (141)
69 1sw5_A Osmoprotection protein 41.9 13 0.00054 14.7 3.0 37 142-178 17-53 (275)
70 2b7l_A Glycerol-3-phosphate cy 34.6 9.9 0.00041 15.5 0.9 24 133-162 10-33 (132)
71 1od6_A PPAT, phosphopantethein 33.2 11 0.00045 15.3 0.8 10 133-142 9-18 (160)
72 2rin_A Putative glycine betain 30.8 19 0.00079 13.6 2.8 41 134-176 7-50 (298)
73 3do8_A Phosphopantetheine aden 29.3 14 0.00058 14.5 0.9 10 133-142 9-18 (148)
74 1r9l_A Glycine betaine-binding 27.9 21 0.00089 13.2 2.5 42 116-167 3-44 (309)
75 1coz_A Protein (glycerol-3-pho 27.8 15 0.00063 14.3 0.9 10 133-142 10-19 (129)
76 3k9w_A Phosphopantetheine aden 27.2 16 0.00066 14.1 0.8 18 122-142 6-23 (170)
77 1vlh_A Phosphopantetheine aden 26.5 16 0.00069 14.0 0.8 11 132-142 20-30 (173)
78 1i7w_B E-cadherin, epithelial- 26.1 21 0.00089 13.2 1.4 17 163-179 127-143 (151)
79 1wj5_A Hypothetical protein (r 25.8 23 0.00096 13.0 2.4 18 271-288 78-95 (120)
80 1ej2_A Nicotinamide mononucleo 24.9 18 0.00077 13.7 0.8 10 134-143 13-22 (181)
81 1kam_A Deamido-NAD(+), nicotin 24.7 24 0.001 12.8 3.1 37 117-162 3-39 (194)
82 3nbk_A Phosphopantetheine aden 24.3 19 0.0008 13.5 0.8 22 118-142 18-39 (177)
83 2c1x_A UDP-glucose flavonoid 3 23.3 25 0.0011 12.7 1.6 17 40-58 16-32 (456)
84 3igz_B Cofactor-independent ph 22.5 26 0.0011 12.6 2.1 18 569-586 528-545 (561)
85 2px6_A Thioesterase domain; th 22.2 27 0.0011 12.5 1.5 34 134-167 105-139 (316)
86 2v78_A Fructokinase; transfera 21.3 12 0.00051 14.9 -0.7 58 122-181 9-68 (313)
87 3hl4_A Choline-phosphate cytid 20.2 26 0.0011 12.6 0.8 12 359-370 88-99 (236)
No 1
>1f7u_A Arginyl-tRNA synthetase; RNA-protein complex, aminoacylation, ligase, ligase/RNA complex; HET: PSU 1MG 2MG H2U M2G 5MC 5MU 1MA ARG; 2.20A {Saccharomyces cerevisiae} SCOP: a.27.1.1 c.26.1.1 d.67.2.1 PDB: 1bs2_A* 1f7v_A*
Probab=100.00 E-value=0 Score=999.14 Aligned_cols=532 Identities=23% Similarity=0.347 Sum_probs=446.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
||+.+.+++.|.+.|+++. +++...+. ..||+|++++||||+||+||.++| |+||++||++|+++++.++.|++
T Consensus 29 ~n~~d~~r~~i~~~l~~~~---g~~~~~~~-~~ie~p~~~~~GD~a~~~a~~~~k--~knP~~iA~~i~~~l~~~~~i~~ 102 (607)
T 1f7u_A 29 VNIVDLMRNYISQELSKIS---GVDSSLIF-PALEWTNTMERGDLLIPIPRLRIK--GANPKDLAVQWAEKFPCGDFLEK 102 (607)
T ss_dssp TCHHHHHHHHHHHHHHHHH---CCCHHHHG-GGCEECSSGGGCSEEEEGGGGCCT--TCCHHHHHHHHHHTCCCTTTEEE
T ss_pred CCHHHHHHHHHHHHHHHHH---CCCHHHHH-HHCCCCCCCCCCCCHHHHHHHHHC--CCCHHHHHHHHHHHCCCCCCEEE
T ss_conf 6878999999999999872---99988888-755699999885839999999966--99999999999983788786757
Q ss_pred EEEECCCEEEEEECHHHHHH-HHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 88547976878888889999-99999856221388765655410002234432244117777785689999999985066
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRK-ILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGY 159 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~-~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~ 159 (586)
+|++|| ||||+|+++++.+ ++.+++..+..||++..++++||+||||||||||||||||+|||+|||+|+|||+++||
T Consensus 103 vevagp-FINf~l~~~~l~~~vl~~il~~~~~~g~~~~~~~kkViVEf~SaNptkplHvGHlR~aiiGd~Lanll~~~G~ 181 (607)
T 1f7u_A 103 VEANGP-FIQFFFNPQFLAKLVIPDILTRKEDYGSCKLVENKKVIIEFSSPNIAKPFHAGHLRSTIIGGFLANLYEKLGW 181 (607)
T ss_dssp EEEETT-EEEEEECHHHHHHHHHHHHHHHGGGTTCCCCSSCCEEEEECCCCBTTSCCBGGGHHHHHHHHHHHHHHHHTTC
T ss_pred EEEECC-EEEEEECHHHHHHHHHHHHHHCHHHCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 998788-7889999999999999999853031287756899879998517989988633135627999999999998799
Q ss_pred CCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHH------------HHH---HHHHHHHHHHHCC
Q ss_conf 6410201477531455567898753222102450006601102410000------------127---8888875764134
Q gi|254780285|r 160 EVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKH------------VGK---ELADKYSSELLNF 224 (586)
Q Consensus 160 ~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~------------~~~---e~~~~~~~~~~~~ 224 (586)
+|+|+|||||||+|||++++++..+..+.... ..+..++...|... ..+ +...++...+..
T Consensus 182 ~V~re~YinD~G~Qi~~l~~s~~~~~~~~~~~---~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~- 257 (607)
T 1f7u_A 182 EVIRMNYLGDWGKQFGLLAVGFERYGNEEALV---KDPIHHLFDVYVRINKDIEEEGDSIPLEQSTNGKAREYFKRMED- 257 (607)
T ss_dssp EEEEEEEEBCCSHHHHHHHHHHHHHCCHHHHH---HCHHHHHHHHHHHHHHHHHHSTTSSCHHHHSSHHHHHHHHHHHH-
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHCCCCCCC---CCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHC-
T ss_conf 18885424755418899999999844545555---55412478899987775301210100334568999999997751-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 30237999999978998875455588708752100015887301045799999999974985113426755565420002
Q gi|254780285|r 225 PEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDM 304 (586)
Q Consensus 225 ~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~ 304 (586)
.+....+. |+..++++++.++++|++|||+||.|.+||+++. ..+..+++.|+++|++++
T Consensus 258 ~d~~~~~~-w~~~~~~s~~~~~~~~~~l~V~fD~~~~Es~~~~---~~~~~~~~~l~~~g~~~e---------------- 317 (607)
T 1f7u_A 258 GDEEALKI-WKRFREFSIEKYIDTYARLNIKYDVYSGESQVSK---ESMLKAIDLFKEKGLTHE---------------- 317 (607)
T ss_dssp TCHHHHHH-HHHHHHHHHHHHHHHHHHTTCCCSEEEEGGGCCH---HHHHHHHHHHHHTTCEEE----------------
T ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCC---HHHHHHHHHHHHCCCCCC----------------
T ss_conf 57999999-8766666799999998625702122221221100---006889999986598220----------------
Q ss_pred CCCCEEEEHHHCCCCCCC-CCCCCCCCHHHHHHHHHHHHHHHHC-CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC-CCC
Q ss_conf 478156510110222222-2102465213568889999997522-5554333677761368999999999722663-451
Q gi|254780285|r 305 DRKQLLFRSTMVGDDVDR-PLLKSDGSYTYFAADLAYFKCKYER-GFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK-AQI 381 (586)
Q Consensus 305 ~~~~~~~~~~~~g~~~d~-vl~rsDGt~~Y~t~DiA~~~~k~e~-~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~-~~~ 381 (586)
+++++|++.+.++++.++ +++|||||+||+|+|||||++|+++ +||++|||||++|.+||+|++.+++.||++. ..+
T Consensus 318 ~~ga~~~~~~~~~~~~~~~vl~ksDGt~tY~t~DIAyh~~K~~r~~fD~~I~V~gadq~~h~~~l~~~l~~lg~~~~~~~ 397 (607)
T 1f7u_A 318 DKGAVLIDLTKFNKKLGKAIVQKSDGTTLYLTRDVGAAMDRYEKYHFDKMIYVIASQQDLHAAQFFEILKQMGFEWAKDL 397 (607)
T ss_dssp ETTEEEEEGGGTCTTTCEEEEECTTSCCCHHHHHHHHHHHHHHHHCCSEEEEECCGGGHHHHHHHHHHHHHTTCGGGGGE
T ss_pred CCCCHHCCHHHHHCCCCCEEEEECCCCEEECHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCHHHCC
T ss_conf 03440001154413566425881699610020088999998871077756651460365799999999998289721034
Q ss_pred EEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH----------------------------HHHHHHHHHHHHHCCHH
Q ss_conf 15311011012211000001223302456777776----------------------------32112345554200012
Q gi|254780285|r 382 NVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE----------------------------VGSDSVRFMMLWRKNSE 433 (586)
Q Consensus 382 ~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e----------------------------vg~~aiky~~L~~~~~~ 433 (586)
.|+.+|++. +||||+|++|+|+|++++ ||++|+||++|++++.+
T Consensus 398 ~hv~~g~~~--------~mstR~G~~v~L~dll~e~~~~~~~~~~~~~~~~~~~~~~~~~a~~vg~~avr~~~l~~~~~~ 469 (607)
T 1f7u_A 398 QHVNFGMVQ--------GMSTRKGTVVFLDNILEETKEKMHEVMKKNENKYAQIEHPEEVADLVGISAVMIQDMQGKRIN 469 (607)
T ss_dssp EEECCCCEE--------SCCGGGTCCCBHHHHHHHHHHHHHHHHHTCHHHHTTCSCHHHHHHHHHHHHHHHHHHSSCTTC
T ss_pred CEEEECCCC--------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 134311222--------455300024338999999999999999850233103578889999972558899998604455
Q ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 33344777653202443678888888899998753320024683223422355211499899999999842189999999
Q gi|254780285|r 434 LLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENAT 513 (586)
Q Consensus 434 ~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~ 513 (586)
+|+|||++++++ +|||+|||||||||||||||||+....+. ....+.+.+.++.|++|++.|++||++|..|+
T Consensus 470 ~~~Fd~d~~~~~-~g~t~pYvQYahARi~SIlrka~~~~~~~------~~~~d~~~L~~~~e~~L~~~L~~fp~vv~~a~ 542 (607)
T 1f7u_A 470 NYEFKWERMLSF-EGDTGPYLQYAHSRLRSVERNASGITQEK------WINADFSLLKEPAAKLLIRLLGQYPDVLRNAI 542 (607)
T ss_dssp CEECCHHHHHCC-SSSSHHHHHHHHHHHHHHHHHTTTSCHHH------HTTSCGGGCCSHHHHHHHHHHTTHHHHHHHHH
T ss_pred CCCCCHHHHHHC-CCCCHHHHHHHHHHHHHHHHHHCCCCCCC------CCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 544579998640-48854769999999999998720466200------14555321599999999999998999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 852812799999999998899987068666665435787899999999999999999998731587985445
Q gi|254780285|r 514 IAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 514 ~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~perM 585 (586)
++++||+||.||++||++||+||++|+ |+. ++++++.+||+||.||++||++||+||||+|||||
T Consensus 543 ~~~ePh~l~~YL~~LA~~f~sfY~~~~------Vl~-~~~e~~~aRL~L~~a~~~vl~~gL~LLGI~~~erM 607 (607)
T 1f7u_A 543 KTHEPTTVVTYLFKLTHQVSSCYDVLW------VAG-QTEELATARLALYGAARQVLYNGMRLLGLTPVERM 607 (607)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHCC------STT-SCHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCSCC
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHHHCC------CCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 959848999999999999999870187------789-99899999999999999999998661498844669
No 2
>2zue_A Arginyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding, protein biosynthesis, ligase/RNA complex; HET: ANP; 2.00A {Pyrococcus horikoshii} PDB: 2zuf_A
Probab=100.00 E-value=0 Score=986.23 Aligned_cols=550 Identities=26% Similarity=0.407 Sum_probs=437.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCC--CCE
Q ss_conf 986899999999999999860488821224527741788012741104899988882899799999999834578--973
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKID--PDV 78 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~--~~i 78 (586)
|++...+++.|.++++++..+. ...+.|++||+++|||||||+||.+||.+|++|++||++|++.|+.+ +.+
T Consensus 3 ~~~~~~i~~~i~~~~~~~~~~~------~~~i~~~~~~~~~~GD~s~nva~~laK~~~~~P~~iA~~i~~~l~~~~~~~i 76 (629)
T 2zue_A 3 MEIRESVKERIEEIIKEIAPQW------EGEIELKETPDPKLGDFGTPIAFKLAKLLKRPPIEIAEKIVEKLKLNLPEGI 76 (629)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTC------CCCCCCEECSSGGGCSEEECHHHHHHHHHTSCHHHHHHHHHHHHTTSCCTTE
T ss_pred HHHHHHHHHHHHHHHHHHCCCC------CCCEEEECCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCE
T ss_conf 7899999999999999736665------6865775499697746558999999998598999999999996311684405
Q ss_pred EEEEEECCCEEEEEECHHHHHHH-HHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHC
Q ss_conf 14885479768788888899999-99998562213887656554100022344322441177777856899999999850
Q gi|254780285|r 79 DSVFIAGKGFINLYLSPSYLRKI-LSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFS 157 (586)
Q Consensus 79 ~~vevagpGfIN~~l~~~~~~~~-l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~ 157 (586)
++++ ++||||||+|+++++.+. +.+++..+.+||+++.++++||+||||||||||||||||+|||+|||+|||||+|+
T Consensus 77 ~~~~-a~~GFINf~l~~~~~~~~l~~~il~~~~~~G~~~~~~~kkV~VEf~SpNptkplHVGHlRsaiiGd~larlle~~ 155 (629)
T 2zue_A 77 KDVK-AVNGYINVFIDYPHFARILINDILAKGDRFGSSEIGKGKKVIVEHTSVNPTKPLHMGHARNAILGDVMARILRFL 155 (629)
T ss_dssp EEEE-EETTEEEEEECHHHHHHHHHHHHHHHGGGTTCCCTTTTCEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEE-ECCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8999-659779999999999999999999626642977467997799985289899986500047478889999999976
Q ss_pred CCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCC--HHHHHHHH-
Q ss_conf 666410201477531455567898753222102450006601102410000127888887576413430--23799999-
Q gi|254780285|r 158 GYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPE--EKWLPIVK- 234 (586)
Q Consensus 158 G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e--~~~~~~~~- 234 (586)
||+|+|+|||||||+|||++++++.....+.. ....+.+..++.+.+......+.+.+..+.....++ +...+..+
T Consensus 156 G~~V~r~~yvnD~G~Qi~~l~~~~~~~~~~~~-~~~~e~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~ 234 (629)
T 2zue_A 156 GYEVEVQNYIDDLGIQFAQVYWGYLRLKEEFE-RIMNELRERGLKDNPIDHALGLLYVEVNRRLEDNPELENEIRDIMKK 234 (629)
T ss_dssp TCEEEEEEEECTTSHHHHHHHHHHHHCHHHHH-HHHHHHHHHTSCSCCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHH-HCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99687988558875567898998998777764-10101012210232046776667777899864016589999999998
Q ss_pred --------HHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf --------997899887545558870875210001588730104579999999997498511342675556542000247
Q gi|254780285|r 235 --------DYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDR 306 (586)
Q Consensus 235 --------~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~ 306 (586)
....+.+++.+.+++.++||+||.|.+||+++. .+.++.+++.|.+.+.+|.... ....
T Consensus 235 le~~~~~~~~~~~~~~~~~~~~~~~l~i~fd~~~~Es~~~~--~~~~e~~~~~L~~~~~~~~~~~-----------~~~~ 301 (629)
T 2zue_A 235 LESGELYGRKLAEEVVRAQMVTTYKLGVKYDLLVWESDIVR--RKLFEIALELLSKNENFYIPSD-----------GKYR 301 (629)
T ss_dssp HHHSSSCCHHHHHHHHHHHHHHHHHHTCCCSEEEEHHHHHH--TTHHHHHHHHHHTSTTEECCSS-----------STTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCHHHHHHCC--CCCHHHHHHHHHHCCCCCCCCC-----------CCCC
T ss_conf 65100788888999999999865440440455312655302--5615788999986045114533-----------4643
Q ss_pred CCEEEEHHHC-CCCCC--CCCCCCCCCHHHHHHHHHHHHHHHHC-----------------------------CCCCCCC
Q ss_conf 8156510110-22222--22102465213568889999997522-----------------------------5554333
Q gi|254780285|r 307 KQLLFRSTMV-GDDVD--RPLLKSDGSYTYFAADLAYFKCKYER-----------------------------GFDNMIY 354 (586)
Q Consensus 307 ~~~~~~~~~~-g~~~d--~vl~rsDGt~~Y~t~DiA~~~~k~e~-----------------------------~~d~~iy 354 (586)
++++++.+.. +++++ +||+|||||+||+|+|||||++|+++ ++|++||
T Consensus 302 ga~~~~~~~~~~d~~~~~~vl~ksDGt~tY~t~DIA~~~~K~~r~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iI~ 381 (629)
T 2zue_A 302 GAFVMDLRKLFPDMKNPILVLRRSDGTATYTGKDIAYHLWKFGKIDVDLLYKEWDSTTWTTAPDGKSMPNKFGNANIVIN 381 (629)
T ss_dssp TCEEEECTTTCSSSSCCEEEEECTTSCBCHHHHHHHHHHHHTTCSCCCCEEEECSSSCEEEEEEEEECTTSSCCCSEEEE
T ss_pred CCHHHHHHHHCCCCCCCCEEEECCCCCEEEEHHHHHHHHHHHHCCCCCHHHCCCCCCCEEECCCHHHHHHHHCCCCEEEE
T ss_conf 32012211105655654003781499545631678877766501342012002455430453530455543046357988
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCC--CCCEEEECCHHHCCCCCCCCCCCCCCCCHH--HHHHHHH---------------
Q ss_conf 677761368999999999722663--451153110110122110000012233024--5677777---------------
Q gi|254780285|r 355 VMGSDHSGYVKRLEAVAAAVSEKK--AQINVLLCELVRLYRDGMPIKMSKRAGDFI--TLRHVVD--------------- 415 (586)
Q Consensus 355 Vv~~~Q~~h~~~v~~~~~~lg~~~--~~~~~~~~~~v~l~~dg~~~kmstR~G~~v--~l~dll~--------------- 415 (586)
|||++|+.||+|++.+++.||+.. .++.|+.|++|.+. +| |||||+|+++ +++|+++
T Consensus 382 V~g~~q~~~~~~l~~~l~~lg~~~~~~~l~h~~~g~v~~~-~~---kms~r~g~~v~~~l~dll~e~~~r~~~~i~~~~~ 457 (629)
T 2zue_A 382 VIGAEQKHPQLAIKYALQLLGFEDAAANLYHLAYEHVERP-EG---KFSGRKGTWVGFTVDEVIQEAVKRARELIEEKNP 457 (629)
T ss_dssp EEEGGGHHHHHHHHHHHHHTTCHHHHHTEEEEEECCEEBT-TB---CCCTTTTTTTTCBHHHHHHHHHHHHHHHHHHHCT
T ss_pred ECCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECC-CC---CCCEEECCEEHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 5476303379999999998279960035378887678627-77---6200011200113777999999999999985065
Q ss_pred ------------HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ------------63211234555420001233344777653202443678888888899998753320024683223422
Q gi|254780285|r 416 ------------EVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRN 483 (586)
Q Consensus 416 ------------evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~ 483 (586)
+||+||+||+||++++.++|+|||++++++ +|||+|||||||||||||||||++.+..++.+.+...
T Consensus 458 ~~~~~~~~~~a~~vg~~Airy~~L~~~~~~~~~FD~d~~l~~-~gnt~~YiQYa~AR~~SIlrKa~~~~~~~~~~~~~~~ 536 (629)
T 2zue_A 458 ALSDEEKAEVAEKVGIGAIRYNLIKYSPDKKIIFRWEDVLNF-EGESAPYIQYAHARCSSILRKAEEEGIKVDPETLFKN 536 (629)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHSSCTTSCEECCHHHHSCC-SSSSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHEEEEEHCCCCCCCCCCCHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCC
T ss_conf 322889999998735002351100026553435579999631-3898310668999999999975640678885564224
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 35521149989999999984218999999985281279999999999889998706866666543578789999999999
Q gi|254780285|r 484 VIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLV 563 (586)
Q Consensus 484 ~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~ 563 (586)
. ....+++.|++|+++|++||++|.+|+++++||+||.|||+||+.||+||++| +|+.++ ++++.+||+||
T Consensus 537 ~--~~~~l~~~E~~L~~~l~~f~~vv~~a~~~~~Ph~l~~Yl~~La~~f~~fY~~~------~Vl~~~-~~~~~~RL~L~ 607 (629)
T 2zue_A 537 A--DFTKLSERERELVIMLSKFPRIVEQAGKDVKPHLIAWFANELASLFNKFYMDH------PVLKAE-EGVREARLLLV 607 (629)
T ss_dssp C--CCSSCCHHHHHHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHHHHHC------CSTTSC-TTHHHHHHHHH
T ss_pred C--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHC------CCCCCC-HHHHHHHHHHH
T ss_conf 3--23349989999999998689999999996981899999999999999999629------867899-89999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 9999999998731587985445
Q gi|254780285|r 564 HAVASIINSGLNIIGVESPNEM 585 (586)
Q Consensus 564 ~a~~~vL~~~L~LLGI~~perM 585 (586)
.|+++||++||.||||+|||||
T Consensus 608 ~a~~~vL~~gL~lLGI~~~e~M 629 (629)
T 2zue_A 608 MAVEQVLKNALYLMGIEAPERM 629 (629)
T ss_dssp HHHHHHHHHHHHHTTCCCCSCC
T ss_pred HHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999998660398855779
No 3
>1iq0_A Arginyl-tRNA synthetase; riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; 2.30A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 d.67.2.1
Probab=100.00 E-value=0 Score=938.16 Aligned_cols=526 Identities=24% Similarity=0.335 Sum_probs=424.3
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEEECC
Q ss_conf 99999999999986048882122452774178801274110489998888289979999999983457897314885479
Q gi|254780285|r 7 FSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDSVFIAGK 86 (586)
Q Consensus 7 l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~vevagp 86 (586)
+++.|.++|.+++.+.+++. .+.|++||+++|||||||+ |.|||.+|++|++||++|++.|+.++.+++++++|
T Consensus 2 l~~~l~~~i~~~l~~~~~~~----~~~i~~~~~~~~GD~s~~~-~~laK~~~~~P~~iA~~i~~~l~~~~~i~~~~~~~- 75 (592)
T 1iq0_A 2 LRRALEEAIAQALKEMGVPV----RLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKDRLPLPEFVEEAVPVG- 75 (592)
T ss_dssp CHHHHHHHHHHHHHTTSCCC----CCCCEECSTTSSCSEEEEC-SHHHHHTTSCHHHHHHHHHHTCCCCTTEEEEEEET-
T ss_pred HHHHHHHHHHHHHHHCCCCC----CEEEECCCCCCCCCCHHHH-HHHHHHHCCCHHHHHHHHHHHCCCCCCEEEEEECC-
T ss_conf 58999999999998549997----5156669989886439899-99998859799999999998479877456886348-
Q ss_pred CEEEEEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
Q ss_conf 76878888889999999998562213887656554100022344322441177777856899999999850666410201
Q gi|254780285|r 87 GFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYY 166 (586)
Q Consensus 87 GfIN~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~ny 166 (586)
|||||+|+++++.+ +++..+..||. ++++|+||||||||||||||||+|||+|||+|||||+++||+|+|+||
T Consensus 76 GfIN~~l~~~~l~~---~i~~~~~~~~~----~~~~v~VEf~SpNp~k~lHvGHlRstiiGd~laril~~~G~~V~r~ny 148 (592)
T 1iq0_A 76 GYLNFRLRTEALLR---EALRPKAPFPR----RPGVVLVEHTSVNPNKELHVGHLRNIALGDAIARILAYAGREVLVLNY 148 (592)
T ss_dssp TEEEEEECHHHHHH---HHHSCCCCCCC----EEEEEEEECCCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred CEEEEEECHHHHHH---HHHHHCCCCCC----CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 66999997999999---99861311377----787799984589899986401278789889999999707998768875
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHH-----HHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 477531455567898753222102450006601102410000127-----888887576413430237999999978998
Q gi|254780285|r 167 INDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGK-----ELADKYSSELLNFPEEKWLPIVKDYSVQAM 241 (586)
Q Consensus 167 vgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~-----e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~ 241 (586)
|||||+|||++++++.......... + ..+.+.+.+.....+ +..+. ..+.....+... .+ ...+.+
T Consensus 149 igD~G~Qi~~~~~~~~~~~~~~~~~---~-~~~~~~~~~y~~~~~~~~~~~~~~~-~~e~~~~~e~~~---~~-e~~~~~ 219 (592)
T 1iq0_A 149 IDDTGRQAAETLFALRHYGLTWDGK---E-KYDHFAGRAYVRLHQDPEYERLQPA-IEEVLHALERGE---LR-EEVNRI 219 (592)
T ss_dssp ECTTSHHHHHHHHHHHHTTCCCCSS---S-CHHHHHHHHHHHHHHCTTTGGGHHH-HHHHHHHHHTTT---TH-HHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCC---H-HHHHHHCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HH-HHHHHH
T ss_conf 2887335379999999856432332---2-4566502036665234677788877-999999987767---99-999999
Q ss_pred HHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHC---CC
Q ss_conf 875455588708752100015887301045799999999974985113426755565420002478156510110---22
Q gi|254780285|r 242 MKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMV---GD 318 (586)
Q Consensus 242 ~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~ 318 (586)
+..+.+++.++|++||.|.+||+++. .+.+..+++.|.+.+..++.... ...++.|++.+.. ++
T Consensus 220 l~~~~~~l~~l~i~fD~~~~Es~~~~--~~~~~~~~~~l~~~~~~~~~~~~-----------~~~g~~~~~~~~~~~~~~ 286 (592)
T 1iq0_A 220 LLAQMATMHALNARYDLLVWESDIVR--AGLLQKALALLEQSPHVFRPREG-----------KYAGALVMDASPVIPGLE 286 (592)
T ss_dssp HHHHHHHHHHTTCCCSEEEEHHHHHH--TTHHHHHHHHHTTSTTEECCSSS-----------TTTTCEEEECTTTSCSCS
T ss_pred HHHHHHHHHHHCCEECCCCEECCCCC--CCCHHHHHHHHHHCCCEEECCCC-----------CCCEEEEEECCCEECCCC
T ss_conf 99888789874544120320133223--76338888999862302312455-----------654279983230211577
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHH-----------------------------CCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 2222210246521356888999999752-----------------------------25554333677761368999999
Q gi|254780285|r 319 DVDRPLLKSDGSYTYFAADLAYFKCKYE-----------------------------RGFDNMIYVMGSDHSGYVKRLEA 369 (586)
Q Consensus 319 ~~d~vl~rsDGt~~Y~t~DiA~~~~k~e-----------------------------~~~d~~iyVv~~~Q~~h~~~v~~ 369 (586)
++++|++||||++||.|+|||||.||++ .++|++|||||.+|..||+|++.
T Consensus 287 ~~~~vl~rsdG~~tY~~~DiA~~~~k~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~I~vvd~~Q~~h~~~v~~ 366 (592)
T 1iq0_A 287 DPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPEGEAYTPKAEETINVVDVRQSHPQALVRA 366 (592)
T ss_dssp CCEEEEECTTSCBCHHHHHHHHHHHHTTSSCCCEEEECCCSSCTTCEEEEEEEEECCCCCSEEEEEEESSSCCCHHHHHH
T ss_pred CCEEEEECCCCCEEEECHHHHHHHHHHCCCCCCCEECCCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 76058982689557752037888885044211000022334237777765420200122003454440242038999999
Q ss_pred HHHHHCCC--CCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------------------HHHHHH
Q ss_conf 99972266--345115311011012211000001223302456777776-------------------------321123
Q gi|254780285|r 370 VAAAVSEK--KAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------------------VGSDSV 422 (586)
Q Consensus 370 ~~~~lg~~--~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------------------vg~~ai 422 (586)
+++.+|++ ..++.|+.||+|.+ +|+ |||||+|++++++||+++ ||+||+
T Consensus 367 ~l~~~g~~~~~~~~~hi~~g~v~~--~g~--kMStR~G~~i~l~dll~e~~~~~~~~~~~~~~~~~~~~~~a~~vg~~ai 442 (592)
T 1iq0_A 367 ALALAGYPALAEKAHHLAYETVLL--EGR--QMSGRKGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAI 442 (592)
T ss_dssp HHHHTTCHHHHTTEEEEEECCEEE--TTB--CSCC----CCBHHHHHHHHHHHHHHHHHHHCTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHCEEEEEEEEEEC--CCE--EEECCCCCEEEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHE
T ss_conf 999857871331102466789972--763--4431477546899999999999999876402320345679988532036
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 45554200012333447776532024436788888888999987533200246832234223552114998999999998
Q gi|254780285|r 423 RFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHL 502 (586)
Q Consensus 423 ky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l 502 (586)
||++|++++.++|+|||++++++ +|||+||||||||||||||||+++... +...+.++.|++|++.|
T Consensus 443 ry~~L~~~~~~~~~Fd~~~~l~~-~g~t~~YiqYa~AR~~SIlrKa~~~~~------------~~~~~~~~~E~~L~~~l 509 (592)
T 1iq0_A 443 RFSMVKTEPKKQIDFRYQEALSF-EGDTGPYVQYAHARAHSILRKAGEWGA------------PDLSQATPYERALALDL 509 (592)
T ss_dssp HHHHHHSCTTSCEEECHHHHHCS-SSSSHHHHHHHHHHHHHHHHHHCCCCC------------CCGGGCCHHHHHHHHHH
T ss_pred EEEEECCCCCCCCCCCHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHCCC------------CCCCCCCHHHHHHHHHH
T ss_conf 87632157655667699999653-289299999999999999997543278------------76553898999999999
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 4218999999985281279999999999889998706866-666543578789999999999999999999873158798
Q gi|254780285|r 503 AEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGREN-PRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVES 581 (586)
Q Consensus 503 ~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~-~~~~v~~~~~~~~~~~RL~L~~a~~~vL~~~L~LLGI~~ 581 (586)
++||++|..|+++++||+||.|||+||+.||+||++|+++ +.++|+. ++++++.+||+||.+|++||++||.||||+|
T Consensus 510 ~~f~~~v~~a~~~~~P~~l~~Yl~~La~~f~~fY~~~~~~~~~~~v~~-~~~~~~~~RL~L~~a~~~vl~~gL~lLGI~~ 588 (592)
T 1iq0_A 510 LDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLT-APEGLRELRLSLVQSLQRTLATGLDLLGIPA 588 (592)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCEETTEESSCSTT-SCTTHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 758999999998688589999999999999988625766655586206-8899999999999999999999754039885
Q ss_pred CCCC
Q ss_conf 5445
Q gi|254780285|r 582 PNEM 585 (586)
Q Consensus 582 perM 585 (586)
||||
T Consensus 589 ~e~M 592 (592)
T 1iq0_A 589 PEVM 592 (592)
T ss_dssp CSCC
T ss_pred CCCC
T ss_conf 5679
No 4
>3fnr_A Arginyl-tRNA synthetase; transferase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Campylobacter jejuni}
Probab=100.00 E-value=0 Score=860.49 Aligned_cols=455 Identities=32% Similarity=0.609 Sum_probs=403.8
Q ss_pred EEECHHHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCC
Q ss_conf 88888899999999985622138876565541000223443224411777778568999999998506664102014775
Q gi|254780285|r 91 LYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDA 170 (586)
Q Consensus 91 ~~l~~~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~ 170 (586)
+.|+++|+.+++++++.++.+||.+. ++++|||||||||||+|||||||+|||||||+|+|||+|+||+|+|+||||||
T Consensus 1 ~~L~~~~l~~~~~~~l~~~~~~g~~~-~~~~~vvve~sSpN~~K~lHVGHlRstiIGdslaRil~~~G~~V~r~nylgD~ 79 (464)
T 3fnr_A 1 MSLSKTFLNELANQALTNPNDFTKGE-KKQESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFNTEYYVNDA 79 (464)
T ss_dssp --CCHHHHHHHHHHHHHSGGGTTCCC-CCSCEEEEECCCCCSSSSCBGGGHHHHHHHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred CEECHHHHHHHHHHHHHCHHHCCCCC-CCCCEEEEEECCCCCCCCCCHHCCHHHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 97779999999999995815228667-88987999755999898752520041699999999999869927899987885
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 31455567898753222102450006601102410000127888887576413430237999999978998875455588
Q gi|254780285|r 171 GAQINTLALSVFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK 250 (586)
Q Consensus 171 G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~ 250 (586)
|+|||++++++..+..+.....+.+.++..|++.+..+.+++..++..+.... +.....++++.++.+++.++++|.
T Consensus 80 G~Q~g~l~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~k~~~~---~~~~~~~~~~~~~~~l~~~~~~~~ 156 (464)
T 3fnr_A 80 GNQIYLLGLSILLSVKESILHENVEYPEQYYKGEYIVDLAKEAFEKFGKEFFS---EENIPSLADWAKDKMLVLIKQNLE 156 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCCCCCCSSCCCSHHHHHHHHHHHHHHCGGGCS---GGGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998555530455210455424666668999999987775311---556999999999999999998799
Q ss_pred HCCCCCCCEECHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCC
Q ss_conf 70875210001588730104579999999997498511342675556542000247815651011022222221024652
Q gi|254780285|r 251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGS 330 (586)
Q Consensus 251 ~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt 330 (586)
++|++||.|.+||+++. .+..+++.|.++|.+++ +++++|+..+..|++.|++++|||||
T Consensus 157 ~l~v~fD~~~~ES~~~~----~~~~~~~~l~~~~~~~e----------------~~ga~~~~~~~~~d~~~~~l~ksdG~ 216 (464)
T 3fnr_A 157 QAKIKIDSYVSERSYYD----ALNATLESLKEHKGIYE----------------QEGKIWLASSQKGDEKDRVIIREDGR 216 (464)
T ss_dssp HTTCCCSCEEEGGGGST----THHHHHHHHHHTTCEEE----------------ETTEEEECGGGGTCSSCEEEECTTSC
T ss_pred HHCCEEEEEHHHHHHHH----HHHHHHHHHHHCCCEEE----------------ECCCEEEECCCCCCCCCCEEEECCCC
T ss_conf 70851000011578887----79999998864598685----------------37987750110378878527960797
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf 13568889999997522555433367776136899999999972266345115311011012211000001223302456
Q gi|254780285|r 331 YTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 331 ~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
++|.|+||||+++|+++++|++|||+|++|.+||+|++.+++.+|+......++.++++.+.++|++.|||||+|+++++
T Consensus 217 ~~Y~t~Dia~~~~k~~~~~d~~I~v~g~dq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~kmS~R~G~~~~l 296 (464)
T 3fnr_A 217 GTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFLGFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILM 296 (464)
T ss_dssp BCHHHHHHHHHHHHHTSSCSEEEEEEEGGGGGGHHHHHHHHHTTTCCGGGEEEEEECCEEEEETTEECCC---CCSSCBH
T ss_pred CCCCHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCEEEEEECCCCCCCCH
T ss_conf 41014589999998722897289998660466776799999975677556405898888997698023441478883559
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200012333447776532024436788888888999987533200246832234223552114
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~ 490 (586)
+||+++||++|+||++|++++.++|+|||++++..++|||+||||||||||||||||++....+... . ....
T Consensus 297 ~dll~evg~~airy~~L~~~~~~~~~Fd~~~~~~~~~gn~~~YiqYa~aR~~SIlrk~~~~~~~~~~-------~-~~~~ 368 (464)
T 3fnr_A 297 SDVVDEIGSDALRYIFLSKKCDTHLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMK-------A-DLQS 368 (464)
T ss_dssp HHHHHHHCHHHHHHHTTSSCTTSCEEEEGGGGGCCSTTSHHHHHHHHHHHHHHHHHHTTCCTTTSTT-------C-CCTT
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCC-------C-CCCC
T ss_conf 9999997477876665314655555346687754132214789999999999999971534331112-------5-5421
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL 570 (586)
+++.|++|+++|++||++|.+|+++++||+||+|||+||++||+||++| +|+.++++ .+||+||.++++||
T Consensus 369 l~~~e~~L~~~l~~fp~vl~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~------~Vl~~~~~---~~RL~L~~~~~~vl 439 (464)
T 3fnr_A 369 LNQDGVNLLFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNEN------KVVGSANE---NDLLKLFSLVALSI 439 (464)
T ss_dssp CCHHHHHHHHHHHTHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHC------CCTTSTTH---HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCC------CCCCCCCH---HHHHHHHHHHHHHH
T ss_conf 8988999999998489999999983781489999999999999887138------98999799---99999999999999
Q ss_pred HHHHHHCCCCCCCCCC
Q ss_conf 9987315879854459
Q gi|254780285|r 571 NSGLNIIGVESPNEMS 586 (586)
Q Consensus 571 ~~~L~LLGI~~perM~ 586 (586)
++||+||||+|||||.
T Consensus 440 ~~gl~LLGI~~~erM~ 455 (464)
T 3fnr_A 440 KTAFSLMGIEAKNKME 455 (464)
T ss_dssp HHHHHHTTCCCCSCC-
T ss_pred HHHHHCCCCCCHHHHC
T ss_conf 9852202989267636
No 5
>1irx_A Lysyl-tRNA synthetase; beta sandwitch, zinc-binding structure, rossmann fold, alpha-helix CAGE; 2.60A {Pyrococcus horikoshii} SCOP: a.97.1.2 c.26.1.1
Probab=99.90 E-value=8.2e-24 Score=184.48 Aligned_cols=295 Identities=16% Similarity=0.132 Sum_probs=146.3
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
++..+|||+ +||+|||||||||+|++++||+|+|+|.+.||+|..+.+|+|.|.+-. +.-++...+.+.+.....+.|
T Consensus 17 ~~~~~~v~~-~g~SPTG~lHIG~~R~av~~daL~n~L~a~g~~~~filrieDtD~~R~-~~~~~~~~~~~~lg~~~~e~p 94 (523)
T 1irx_A 17 GEKEKYVVE-SGITPSGYVHVGNFRELFTAYIVGHALRDKGYEVRHIHMWDDYDRFRK-VPRNVPQEWKDYLGMPISEVP 94 (523)
T ss_dssp CCCSEEEEE-EEECCSSCCCHHHHHHHHHHHHHHHHHHTTTCEEEEEEEECTTSBCCC-CCSSSCGGGGGGTTSBGGGSC
T ss_pred CCCCEEEEE-ECCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHC-CCHHHHHHHHHHCCCCHHHCC
T ss_conf 898739994-378899863024782628999999999976968699999989851201-300099999997699766558
Q ss_pred H-HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHH
Q ss_conf 0-110241000012788888757641343023799999997899887545558870875210001588730104579999
Q gi|254780285|r 198 E-GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e-~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~ 276 (586)
+ +...+.|......... .+.+.+....+..... ..++....++..+.............. .
T Consensus 95 ~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~ 156 (523)
T 1irx_A 95 DPWGCHESYAEHFMRKFE-EEVEKLGIEVDLLYAS--ELYKRGEYSEEIRLAFEKRDKIMEILN---------------K 156 (523)
T ss_dssp CTTSSSSSHHHHHHHHHH-HHHHTTTCCCEEEEHH--HHHHTTTTHHHHHHHHHTHHHHHHHHH---------------H
T ss_pred CCCCCCCHHHHHHHHHHH-HHHHHHCCCCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHCCC---------------C
T ss_conf 988775449999998889-9999838754444627--887515899999999997402231144---------------2
Q ss_pred HHHHHHC---CCCCCCC--CCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999974---9851134--2675556542000247815651011022222221024652135688899999975225554
Q gi|254780285|r 277 IDNLARQ---GYVYEGI--LPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDN 351 (586)
Q Consensus 277 i~~l~~~---g~~~e~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~ 351 (586)
....... ...+... ..............+...........+...+.++.++||.++|..---+++. .++-
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-----~~~v 231 (523)
T 1irx_A 157 YREIAKQPPLPENWWPAMVYCPEHRREAEIIEWDGGWKVKYKCPEGHEGWVDIRSGNVKLRWRVDWPMRWS-----HFGV 231 (523)
T ss_dssp HHHHTTCCCCCTTCCSEEEECTTTCCEECEEEECSSSCEEECCSSSCCCEECTTSSCEEECHHHHHHHHHH-----HSCC
T ss_pred HHEEEECCCCCCCCCCCCCHHCCCCCCCCEEEECCCCEEEEEECCCCCCCEEEECCCCCEEEECCCCHHHC-----CCCC
T ss_conf 01023123233454455521114575541477627853799866887320464069873555326202112-----7873
Q ss_pred CCCCCCCCHHHH----HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333677761368----9999999997226634511531101101221100000122330245677777632112345554
Q gi|254780285|r 352 MIYVMGSDHSGY----VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMML 427 (586)
Q Consensus 352 ~iyVv~~~Q~~h----~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L 427 (586)
-+.+.|.+|-.. ......+...+|+..+.+.|+. ++.+ ++...|||+|.|++++++++++.++.++++|.++
T Consensus 232 ~~~~~g~dh~~~~~~~~~~~~~~~~~~~~~~p~~~h~~--~l~~--~~~~~KmSKr~g~~~~~~~~~~~~~~~~~~~~~~ 307 (523)
T 1irx_A 232 DFEPAGKDHLVAGSSYDTGKEIIKEVYGKEAPLSLMYE--FVGI--KGQKGKMSGSKGNVILLSDLYEVLEPGLVRFIYA 307 (523)
T ss_dssp CBCCEEHHHHSTTSHHHHHHHHHHHHHCCCCCBCCEEC--CEEE--SCC---------CCCCHHHHHTTSCHHHHHHHHH
T ss_pred EEECCCEEECCCCHHHHHHHHHHHHCCCCCCCEEEEEE--EEEC--CCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 68757121037840678889999860688886578983--5761--7755456666666214999987079999899873
Q ss_pred HHCCHHHHHHHHHH
Q ss_conf 20001233344777
Q gi|254780285|r 428 WRKNSELLDFDFCK 441 (586)
Q Consensus 428 ~~~~~~~~~Fd~d~ 441 (586)
+....+.+.||.+.
T Consensus 308 ~~~~~~~~~~~~~~ 321 (523)
T 1irx_A 308 RHRPNKEIKIDLGL 321 (523)
T ss_dssp SSCTTSCEEECCST
T ss_pred CCCCCCCCCCCCCH
T ss_conf 78876565502101
No 6
>3gdz_A Arginyl-tRNA synthetase; klebsiella pneumoniae subsp. pneumoniae MGH 78578, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Klebsiella pneumoniae subsp}
Probab=99.87 E-value=1.2e-21 Score=169.30 Aligned_cols=106 Identities=23% Similarity=0.417 Sum_probs=92.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCEEE
Q ss_conf 98689999999999999986048882122452774178801274110489998888289979999999983457897314
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVARIKIDPDVDS 80 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk~P~~iA~~i~~~l~~~~~i~~ 80 (586)
||+...+.+.|..++.++ +.+.. ..+.|++|++++|||||||+||.+||.+|++|++||++|++.+..++.+++
T Consensus 4 MnI~~~l~~~i~~al~~~----~~~~~--~~~~i~~~~~~~~GD~~~n~a~~lak~~~~~P~~iA~~i~~~l~~~~~~~~ 77 (109)
T 3gdz_A 4 MNIQALLSEKVSQALIAA----GAPAD--CEPQVRQSAKVQFGDYQANGVMAVAKKLGMAPRQLAEQVLSHLDLNGIANK 77 (109)
T ss_dssp CCHHHHHHHHHHHHHHHT----TCCTT--CCCCEEECSSGGGCSEEECCHHHHHHHTTSCHHHHHHHHHHHCCCTTTEEE
T ss_pred CCHHHHHHHHHHHHHHHC----CCCCC--CCCCEECCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCEEE
T ss_conf 179999999999999975----89767--885234489987665135999999988279889999999986255898899
Q ss_pred EEEECCCEEEEEECHHHHHHHHHHHHHCCHHCC
Q ss_conf 885479768788888899999999985622138
Q gi|254780285|r 81 VFIAGKGFINLYLSPSYLRKILSSIVVSGIEYG 113 (586)
Q Consensus 81 vevagpGfIN~~l~~~~~~~~l~~i~~~~~~yG 113 (586)
++++|||||||+|+++|+.+.|.+++. .++||
T Consensus 78 v~va~pGFIN~~l~~~~~~~~l~~il~-~~~~G 109 (109)
T 3gdz_A 78 VEIAGPGFINIFLDPAFLADNVNRALQ-SERLG 109 (109)
T ss_dssp EEEETTTEEEEEECHHHHHHHHHHHHT-TC---
T ss_pred EEEECCCEEEEEECHHHHHHHHHHHHH-CCCCC
T ss_conf 998579878999889999999999984-86798
No 7
>3kfl_A Methionyl-tRNA synthetase; parasite, aminoacyl-tRNA synthetase, tRNA ligase metrs, methionine, translation, ATP-binding; HET: ME8; 2.00A {Leishmania major}
Probab=99.86 E-value=9.1e-19 Score=149.09 Aligned_cols=399 Identities=15% Similarity=0.200 Sum_probs=227.0
Q ss_pred CCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 88765655410002234432244117777785689999999985066641020147753145556789875322210245
Q gi|254780285|r 113 GRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNN 192 (586)
Q Consensus 113 G~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~ 192 (586)
|...+.+.++.+|+-.=|.||+++|+||+|+.++.|+++|-++..||+|.-..-.+|-|+.+..-+. +
T Consensus 18 ~~~~~~~~~~~~itt~~pY~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~V~~v~G~D~hG~~i~~~A~-------~----- 85 (564)
T 3kfl_A 18 GPGSMKKQKVFFATTPIYYVNASPHIGHVYSTLIVDVLGRYHRVKGEEVFVMTGTDEHGQKVAEAAA-------K----- 85 (564)
T ss_dssp ------CCCCEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEECCSHHHHHHHH-------H-----
T ss_pred CCCCCCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHH-------H-----
T ss_conf 9977677998899489988888523566688999999999999369970340836876199999999-------8-----
Q ss_pred CCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHH
Q ss_conf 00066011024100001278888875764134302379999999789988754555887087521000158873010457
Q gi|254780285|r 193 DSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSP 272 (586)
Q Consensus 193 ~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~ 272 (586)
+ |.. .+++ .+...+.+++++++|||.||.+..-++- .....
T Consensus 86 -----~----g~~----~~e~------------------------~~~~~~~~~~~~~~lgi~~D~~~~T~~~--~~~~~ 126 (564)
T 3kfl_A 86 -----Q----GVS----PMDF------------------------TTSVSSEFKQCFQEMNYDMNYFIRTTNP--THEKL 126 (564)
T ss_dssp -----T----TCC----HHHH------------------------HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHH
T ss_pred -----C----CCC----HHHH------------------------HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHH
T ss_conf -----5----999----9999------------------------9999999999999939817878215988--99999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCC----------------------------CCCCCCEEEEHHHCCCC-----
Q ss_conf 999999999749851134267555654200----------------------------02478156510110222-----
Q gi|254780285|r 273 IRDIIDNLARQGYVYEGILPPPKSKTTQKC----------------------------DMDRKQLLFRSTMVGDD----- 319 (586)
Q Consensus 273 i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~g~~----- 319 (586)
+.+++.+|.++|++|++.....-+..+... ..+....+++.....+.
T Consensus 127 v~~~f~~l~~~g~i~~~~~~~~~~~~~~~~l~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~~~~ 206 (564)
T 3kfl_A 127 VQDIWKKLAAKGDIYLGKYEGWYSVSDESFLTAQNVADGVDRDGKPCKVSLESGHVVTWVEEENYMFRLSAFRERLLKYF 206 (564)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEETTTTEEECGGGEEEEECTTSCEEEEETTTSCBCEEEEEEEEEECGGGGHHHHHHHH
T ss_pred HHHHHHHHCCCCCEEEECCEEEEECCCCCCCCHHHHCCCHHCCCCCCCCCCCCCCCCEEECCCCEEHHHHHHHHHHHHHH
T ss_conf 99999971215207960331011113422032777522121013333212356875434145750100245699999999
Q ss_pred ------------------------CCCCCCCC------CCC--------HHHHHHHHH--HHH---HHHH----------
Q ss_conf ------------------------22221024------652--------135688899--999---9752----------
Q gi|254780285|r 320 ------------------------VDRPLLKS------DGS--------YTYFAADLA--YFK---CKYE---------- 346 (586)
Q Consensus 320 ------------------------~d~vl~rs------DGt--------~~Y~t~DiA--~~~---~k~e---------- 346 (586)
.|..+-+. =|. ..|.=-|.. |.- +...
T Consensus 207 ~~~~~~~~p~~~~~~~~~~~~~~~~d~~~~~~~~~~~~WGipvP~~~~~~~~vw~da~~~~~s~~~~~~~~~g~~~~~~~ 286 (564)
T 3kfl_A 207 HDHPNCIVPEFRRREVIKTVEKGLFDLSISRKRESVMNWSIPVPGDERHCIYVWLDALFNYYTGALTRVATDGTETLDED 286 (564)
T ss_dssp HHCTTSEESHHHHHHHHHHHHHCCCCEECEEEGGGGTTCSCEETTEEEEEECHHHHHHTHHHHHHHEEECTTSCEEECSS
T ss_pred HHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 84877547378888888876300120256676778899887578899855899616676778876530123566444401
Q ss_pred ----CCCCCCCCCCCCCHHHH-HHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf ----25554333677761368-9999999997226634511531101101221100000122330245677777632112
Q gi|254780285|r 347 ----RGFDNMIYVMGSDHSGY-VKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDS 421 (586)
Q Consensus 347 ----~~~d~~iyVv~~~Q~~h-~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~a 421 (586)
...-..++++|.|+-.+ .-..-..+...+...++ .++..+++.+ ||+ |||+-.||+|..+|++++.|.++
T Consensus 287 ~~~~~~~p~~i~~~G~D~~~fh~~~~~~~~~~~~~~~P~-~~~~~~~l~~--dg~--KMSKS~GN~i~~~d~i~~ygaD~ 361 (564)
T 3kfl_A 287 HHALNRWPADVHVVGKDILKFHAIYWPAFLMSAELPLPE-RLVSHGWWTK--DHK--KISKSLGNAFDPVEKAKEFGIDA 361 (564)
T ss_dssp STTTTCCSCSEEEEEGGGHHHHHTHHHHHHHHTTCCCCS-CEEEECCEEE--TTE--ECCTTTTCCCCHHHHHHHHCHHH
T ss_pred HHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHH--HHH--HHHHCCCCCCCHHHHHHCCCHHH
T ss_conf 666254864023436662001145888887762258996-1100034312--034--32002588788556543189899
Q ss_pred HHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHH
Q ss_conf 3455542000-123334477765320244367888888889999875332002468322342235521149989999999
Q gi|254780285|r 422 VRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIV 500 (586)
Q Consensus 422 iky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~ 500 (586)
+||++++..+ ..+..|+++........+.+--+.-..-|+.+...+... ..+.....++....++.
T Consensus 362 lR~~l~~~~~~~~d~~f~~~~~~~~~~~~~~~~l~n~~~r~~~~~~~~~~-------------~~~~~~~~~~~d~~il~ 428 (564)
T 3kfl_A 362 LKYFLMRESNFQDDGDYSDKNMVARLNGELADTLGNLVSRCVAPKINVNG-------------MWPEPAEYSESDKTLIA 428 (564)
T ss_dssp HHHHHHHHCCSSCCEECCHHHHHHHHHHTTTTTHHHHHHHHHCTTTSTTS-------------BCCCCCCCCHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------CCCCHHHHHHHHHHHHH
T ss_conf 99999962986666420168999999888887788999999987652168-------------88851221157887788
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHH---------
Q ss_conf 9842189999999852812799999999998899987068666665435787899999999-999999999---------
Q gi|254780285|r 501 HLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQ-LVHAVASII--------- 570 (586)
Q Consensus 501 ~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~-L~~a~~~vL--------- 570 (586)
.+..+...+..+.+++..+..+.-+++++...|.|++..+ | -+... ++++...+=|. +..+++.++
T Consensus 429 ~~~~~~~~v~~~~e~~~f~~a~~~i~~~~~~~N~yi~~~~--p-w~l~k-~d~~~~~~vl~~~~~~l~~l~~ll~P~~P~ 504 (564)
T 3kfl_A 429 SLNNLAGTVDHYYCLPDIQHALIAIFDVLRSLNAYVTENA--P-WKLVK-MDTARLGTVLYVTMEGLRICTMFLQPVMPQ 504 (564)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC--H-HHHTT-TCHHHHHHHHHHHHHHHHHHHHHHTTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--C-HHHHC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8998999999999867999999999999999999999769--8-64426-899999999999999999999999989769
Q ss_pred --HHHHHHCCCCCCCC
Q ss_conf --99873158798544
Q gi|254780285|r 571 --NSGLNIIGVESPNE 584 (586)
Q Consensus 571 --~~~L~LLGI~~per 584 (586)
+..+..||++..++
T Consensus 505 ~ae~i~~~Lg~~~~~~ 520 (564)
T 3kfl_A 505 KAKEIMDALGVPEAAR 520 (564)
T ss_dssp HHHHHHHHHTCCGGGS
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999999859996334
No 8
>3h99_A Methionyl-tRNA synthetase; rossmann fold, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, metal-binding, nucleotide-binding; HET: CIT; 1.40A {Escherichia coli k-12} PDB: 3h97_A* 3h9b_A* 1f4l_A 3h9c_A* 1pfv_A* 1pfu_A 1p7p_A* 1pfw_A* 1pfy_A* 1pg0_A* 1pg2_A* 1qqt_A 1mea_A 1med_A
Probab=99.86 E-value=2.9e-19 Score=152.54 Aligned_cols=351 Identities=18% Similarity=0.189 Sum_probs=202.7
Q ss_pred CCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 38876565541000223443224411777778568999999998506664102014775314555678987532221024
Q gi|254780285|r 112 YGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYN 191 (586)
Q Consensus 112 yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~ 191 (586)
-|+. +...||++|=..-|+||+++|+||+|+.++.|.++|-++..||+|.=.--.+|.|+.+-.-+.. +
T Consensus 10 ~~~~-~~~~~~~~vt~~~P~~nG~lHlGHa~~~~~~Di~~Ry~r~~G~~v~~~~G~D~~g~~i~~~a~~------~---- 78 (560)
T 3h99_A 10 HGSM-TQVAKKILVTCASPYANGSIHLGHMLEHIQADVWVRYQRMRGHEVNFICADDAHGTPIMLKAQQ------L---- 78 (560)
T ss_dssp --------CCEEEEEECCCBTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHHH------H----
T ss_pred CCCC-CCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHHH------C----
T ss_conf 5666-5577887997699888896113255879999999999994699545507045573999999998------5----
Q ss_pred CCCCCCHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHH
Q ss_conf 50006601102410000127888887576413430237999999978998875455588708752100015887301045
Q gi|254780285|r 192 NDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPS 271 (586)
Q Consensus 192 ~~~~~~e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~ 271 (586)
|.- .+ ++ .+...+.+++++++|||.+|.+..-++-. ...
T Consensus 79 -----------g~~----p~-----------------------e~-~~~~~~~~~~~~~~l~i~~d~~~~T~~~~--~~~ 117 (560)
T 3h99_A 79 -----------GIT----PE-----------------------QM-IGEMSQEHQTDFAGFNISYDNYHSTHSEE--NRQ 117 (560)
T ss_dssp -----------TSC----HH-----------------------HH-HHHHHHHHHHHHHHTTCCCSEEEESSSHH--HHH
T ss_pred -----------CCC----HH-----------------------HH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHH
T ss_conf -----------999----99-----------------------99-99999999999997498278886179889--999
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCC-------------------------------CCCCC--C---------------
Q ss_conf 79999999997498511342675556-------------------------------54200--0---------------
Q gi|254780285|r 272 PIRDIIDNLARQGYVYEGILPPPKSK-------------------------------TTQKC--D--------------- 303 (586)
Q Consensus 272 ~i~~~i~~l~~~g~~~e~~~~~~~~~-------------------------------~~~~~--~--------------- 303 (586)
.+.+++.+|.++|++|.+.....-+. +.... +
T Consensus 118 ~v~~if~~L~~~G~iy~~~~~~~~~p~~~~~l~d~~v~g~~~~~~~~~~~gd~~e~~g~~~~~~eli~~~~~~~~~~~~~ 197 (560)
T 3h99_A 118 LSELIYSRLKENGFIKNRTISQLYDPEKGMFLPDRFVKGTCPKCKSPDQYGDNCEVCGATYSPTELIEPKSVVSGATPVM 197 (560)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEEETTTTEECCGGGEEEECTTTCCSSEETTBCTTTCCBCCGGGCEEEEETTTCCCCEE
T ss_pred HHHHHHHHHHHCCCEECEEEEEEECCCCCCCCCHHHEEEECCCCCCCCCCCCCCEECCCCCCHHHHCCCCCCCCCCCCCE
T ss_conf 99999999997797202035788606777356225244135777761006886632587698577307755555577610
Q ss_pred CCCCCEEEEHHHCCCC--------------------------CCC-----------CCCCCCCCHHHHHHHHH--H----
Q ss_conf 2478156510110222--------------------------222-----------21024652135688899--9----
Q gi|254780285|r 304 MDRKQLLFRSTMVGDD--------------------------VDR-----------PLLKSDGSYTYFAADLA--Y---- 340 (586)
Q Consensus 304 ~~~~~~~~~~~~~g~~--------------------------~d~-----------vl~rsDGt~~Y~t~DiA--~---- 340 (586)
......+++.....+. .|. ++-..++...|.--|-. |
T Consensus 198 ~~~~~~f~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~d~~isr~~~~~g~~~~~~~~~~~~vW~d~~~~~~~~~ 277 (560)
T 3h99_A 198 RDSEHFFFDLPSFSEMLQAWTRSGALQEQVANKMQEWFESGLQQWDISRDAPYFGFEIPNAPGKYFYVWLDAPIGLMGSF 277 (560)
T ss_dssp EEEEEEEECGGGGHHHHHHHHHTSCSCHHHHHHHHHHHHHCCCCEECEEESSCSSCBCTTCTTEEECHHHHHHHHHHHHH
T ss_pred EECCCHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHH
T ss_conf 46411122317899999997643742488999998766438887787887676898788789861365036211136665
Q ss_pred --HHHHHH-----------CCCCCCCCCCCCCHHH-HHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCC
Q ss_conf --999752-----------2555433367776136-89999999997226634511531101101221100000122330
Q gi|254780285|r 341 --FKCKYE-----------RGFDNMIYVMGSDHSG-YVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGD 406 (586)
Q Consensus 341 --~~~k~e-----------~~~d~~iyVv~~~Q~~-h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~ 406 (586)
...... ...-..++++|.|+.- |.-.....+...+.+..+ .++..+++. .+|+ |||+..||
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~Di~~fh~~~~~a~l~~~~~~~~~-~i~~~g~l~--~~G~--KMSKS~GN 352 (560)
T 3h99_A 278 KNLCDKRGDSVSFDEYWKKDSTAELYHFIGKDIVYFLSLFWPAMLEGSNFRKPS-NLFVHGYVT--VNGA--KMSKSRGT 352 (560)
T ss_dssp HHHHHHHTCSSHHHHHHBTTCCSEEEEEEEGGGHHHHHTHHHHHHHHTTBCCCS-EEEEECCEE--ETTE--ECCTTTTC
T ss_pred HCCCCCCCCHHHHHHCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCC-EEEEEEEEE--CCCC--CCCCCCCC
T ss_conf 313576665055765045667774155447730003998999998605568983-675300450--4888--60246886
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 24567777763211234555420001--23334477765320----2443678888888899998753320024683223
Q gi|254780285|r 407 FITLRHVVDEVGSDSVRFMMLWRKNS--ELLDFDFCKVKEQS----KENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 (586)
Q Consensus 407 ~v~l~dll~evg~~aiky~~L~~~~~--~~~~Fd~d~~l~~~----~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~ 480 (586)
+|...|++++.|.+++||++++..+. .+..|+++.+.... -.+-+-++ .|+.+...+......
T Consensus 353 ~i~p~~~i~~ygaD~lR~~ll~~~~~~~~d~~fs~~~~~~~~n~~~~~~~~n~~----~~~~~~~~~~~~~~~------- 421 (560)
T 3h99_A 353 FIKASTWLNHFDADSLRYYYTAKLSSRIDDIDLNLEDFVQRVNADIVNKVVNLA----SRNAGFINKRFDGVL------- 421 (560)
T ss_dssp CCBHHHHHHHSCHHHHHHHHHHHCCSSCCCEEECHHHHHHHHHHHCCCCCTHHH----HTTHHHHHHHSTTBC-------
T ss_pred CCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHCCCCC-------
T ss_conf 788999987418189999999856777777666899999999999985157899----988877764058854-------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 42235521149989999999984218999999985281279999999999889998706
Q gi|254780285|r 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 481 ~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
+. ... ...++..+......+.++.++++++..++.+++++...|.|-+..
T Consensus 422 ~~------~~~---~~~~~~~~~~~~~~v~~~~e~~~~~~Al~~i~~~i~~~N~Yi~~~ 471 (560)
T 3h99_A 422 AS------ELA---DPQLYKTFTDAAEVIGEAWESREFGKAVREIMALADLANRYVDEQ 471 (560)
T ss_dssp CS------SCS---CHHHHHHHHHTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC------CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 41------012---477899999999999999986699999999999999999999835
No 9
>2x1l_A Methionyl-tRNA synthetase; nucleotide-binding, protein biosynthesis, ligase, aminoacyl- synthetase; HET: ADN CXS; 2.30A {Mycobacterium smegmatis} PDB: 2x1m_A*
Probab=99.85 E-value=5e-18 Score=143.90 Aligned_cols=351 Identities=18% Similarity=0.208 Sum_probs=203.4
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
|..++..|.-.=|+|++++|+||+|+.++.|.++|-++..||+|.=.--.++.|+.+-.-+ .+
T Consensus 9 ~~~~~~~i~~~~Py~nG~lHiGHa~~~~~~Dii~R~~r~~G~~v~~v~G~D~hG~~i~~~A-------~k---------- 71 (524)
T 2x1l_A 9 GGSEPFYITTAIAYPNGVPHIGHAYEYIATDAIARFKRLDGYDVRYLTGTDVHGQKMAETA-------AK---------- 71 (524)
T ss_dssp --CCEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCCSHHHHHHH-------HH----------
T ss_pred CCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCHHHHHHHHH-------HH----------
T ss_conf 9999989958998888971004027799999999999823997142581173479999999-------98----------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf 01102410000127888887576413430237999999978998875455588708752100015887301045799999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i 277 (586)
+ |. . . +++ .+...+.+++++++|||.||.+..-++- .....+.+++
T Consensus 72 ~----g~--------------------~----~---~e~-~~~~~~~~~~~~~~l~i~~D~~~~T~~~--~~~~~~~~~~ 117 (524)
T 2x1l_A 72 E----GI--------------------P----A---AEL-ARRNSDVFQRLQEKLNISFDRFIRTSDA--DHYEASKAIW 117 (524)
T ss_dssp H----TS--------------------C----H---HHH-HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHHHHHHH
T ss_pred C----CC--------------------C----H---HHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCH--HHHHHHHHHH
T ss_conf 4----99--------------------9----9---999-9999999999999969947888116988--9999999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCC------------------------CCCCCCCCCEEEEHHHCCCC--------------
Q ss_conf 9999749851134267555654------------------------20002478156510110222--------------
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTT------------------------QKCDMDRKQLLFRSTMVGDD-------------- 319 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~g~~-------------- 319 (586)
.+|.++|++|++.....-+... .....+....+++.+...+.
T Consensus 118 ~~l~~~G~iy~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~p 197 (524)
T 2x1l_A 118 KRMADAGDIYLDAYKGWYSIRDERFFTENETTEQPDGTRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEFIGP 197 (524)
T ss_dssp HHHHHTTCEEEEEEEEEEETTTTEEECGGGEEECTTSCEEETTTCCBEEEEEEEEEEECGGGSHHHHHHHHHHCGGGEES
T ss_pred HHHHHCCCEEEECCCCCCCCCCCEEEECCCCCCCCCCCEECCCCCCCCEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 88986494897054145532453352000114568851000336986656405642013077799999999848654585
Q ss_pred ---------------CCCCCCC-----------CCCCHHHHHHHHH--H---HHHHH------HCCCCCCCCCCCCCHHH
Q ss_conf ---------------2222102-----------4652135688899--9---99975------22555433367776136
Q gi|254780285|r 320 ---------------VDRPLLK-----------SDGSYTYFAADLA--Y---FKCKY------ERGFDNMIYVMGSDHSG 362 (586)
Q Consensus 320 ---------------~d~vl~r-----------sDGt~~Y~t~DiA--~---~~~k~------e~~~d~~iyVv~~~Q~~ 362 (586)
.+..+-| -++..+|.--|-. + ..|.. +...-..+.+.|.|+..
T Consensus 198 ~~~~~~~~~~~~~~l~~~~~~r~~~~~~~~~~~~~~~v~~~Wfds~~~~~~~~~~~~~~~~~~~~~~p~di~~~G~D~~~ 277 (524)
T 2x1l_A 198 DARRNEIVSFVSGGLKDLSISRTTFDWGVPVPDHPDHVMYVWVDALTNYLTGVGFPDTESESFRRYWPADLHMIGKDIIR 277 (524)
T ss_dssp HHHHHHHHHHHTTCCCCEECEESSCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTCTTSHHHHHHCSCSEEEEEGGGHH
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECHHHCCCCCCCCCCCCCCHHHHHCCCCEEEEECCEEHH
T ss_conf 66665468876554644455677788899999975633333101002311336888657576772488507883123007
Q ss_pred -HHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHH
Q ss_conf -89999999997226634511531101101221100000122330245677777632112345554200-0123334477
Q gi|254780285|r 363 -YVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFC 440 (586)
Q Consensus 363 -h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d 440 (586)
|.-..-+.+...|.+.++ .++..|++.+ +|+ |||+..||+|.++|++++.|.+++||++++.. ...+..|+++
T Consensus 278 fh~~~~~a~~~~~~~~~~~-~i~~~g~l~~--~G~--KMSKSlGN~i~~~~~l~~ygaD~lR~~l~~~~~~~~d~~f~~~ 352 (524)
T 2x1l_A 278 FHTVYWPAFLMSAGLPLPK-RIFAHGWLLN--RGE--KMSKSIGNVVDPVNLVDTFGLDQVRYFLLREVPFGQDGSYNED 352 (524)
T ss_dssp HHHTHHHHHHHHHTCCCCS-CEEEECCEEE--CSC--SEETTTEESSCHHHHHHHHCHHHHHHHHHHHSCTTSCEEECHH
T ss_pred HHHHHHHHHHHHCCCCCCC-EEEECEEEEC--CCC--EECCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCHH
T ss_conf 9999999999847999885-8996418963--885--7137799547869999863943999999870876777656689
Q ss_pred HHHHHC---CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 765320---24436788888888999987533200246832234223552114998999999998421899999998528
Q gi|254780285|r 441 KVKEQS---KENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQE 517 (586)
Q Consensus 441 ~~l~~~---~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~ 517 (586)
...... --|.. ....-|+.....+.... ........++....++..+......+..+...+.
T Consensus 353 ~~~~~~n~~l~~~~---~n~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~d~~~ 417 (524)
T 2x1l_A 353 AIIGRVNADLANEL---GNLAQRSLSMVAKNLGA------------AVPDPGEFTDEDTALLAAADALLERVREHFDVPA 417 (524)
T ss_dssp HHHHHHHHCCCCCC---HHHHHHHHHHHHHHSTT------------BCCCCCCCCHHHHHHHHHHHTHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHCCCC------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999---99998888876521466------------5565200134565665556777777666677678
Q ss_pred CHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 1279999999999889998706
Q gi|254780285|r 518 PYKLAFYLYDLASVFHGHWSHG 539 (586)
Q Consensus 518 P~~l~~Yl~~La~~Fn~fY~~~ 539 (586)
++..++.+++++...|.|++..
T Consensus 418 ~~~Al~~i~~~i~~~N~Yl~~~ 439 (524)
T 2x1l_A 418 MHLALEAIWSVLGAANRYFSAQ 439 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9999999999999999999966
No 10
>2csx_A Methionyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 2.70A {Aquifex aeolicus} PDB: 2ct8_A*
Probab=99.83 E-value=9.3e-18 Score=142.02 Aligned_cols=348 Identities=18% Similarity=0.145 Sum_probs=202.9
Q ss_pred CCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 55410002234432244117777785689999999985066641020147753145556789875322210245000660
Q gi|254780285|r 119 KGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 119 ~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
.-||.+|.-.=|.||+++|+||+|+.++.|.++|.++..||+|.-.--.+|-|..+-.-+. + .
T Consensus 3 ~~~~~~i~~~~py~nG~lHlGHa~~~i~~Di~~R~~r~~G~~V~~v~g~Dd~g~~i~~~a~-------~-~--------- 65 (497)
T 2csx_A 3 LMKKFYVTTPIYYVNDVPHLGHAYTTIAADTIARYYRLRDYDVFFLTGTDEHGLKIQKKAE-------E-L--------- 65 (497)
T ss_dssp SSCEEEEEEEEEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHTHHH-------H-S---------
T ss_pred CCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH-------H-C---------
T ss_conf 8888799689988889710010487999999999998239987564753416699999999-------8-5---------
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHH
Q ss_conf 11024100001278888875764134302379999999789988754555887087521000158873010457999999
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~ 278 (586)
|.. .+++ .+...+.++++++.+||.+|.+.....- .....+..++.
T Consensus 66 ----g~~----~~e~------------------------~~~~~~~~~~~~~~l~i~~d~~~~t~~~--~~~~~~~~~~~ 111 (497)
T 2csx_A 66 ----GIS----PKEL------------------------VDRNAERFKKLWEFLKIEYTKFIRTTDP--YHVKFVQKVFE 111 (497)
T ss_dssp ----SSC----HHHH------------------------HHHHHHHHHHHHHHTTCCCSEEEETTSH--HHHHHHHHHHH
T ss_pred ----CCC----HHHH------------------------HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHH
T ss_conf ----999----9999------------------------9999999999999859888767625887--87655889999
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCC--------------------CCCEEEEHHHCCC--------------------
Q ss_conf 999749851134267555654200024--------------------7815651011022--------------------
Q gi|254780285|r 279 NLARQGYVYEGILPPPKSKTTQKCDMD--------------------RKQLLFRSTMVGD-------------------- 318 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~g~-------------------- 318 (586)
++.++|++|+.......+........+ ....+++.....+
T Consensus 112 ~l~~~g~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 191 (497)
T 2csx_A 112 ECYKRGDIYLGEYEGWYCVGCEEFKSEAELAEDHTCPIHQKKCEYIKEPSYFFRLSKYQDKLLELYEKNPEFIQPDYRRN 191 (497)
T ss_dssp HHHHTTCEEEEEC---------------------------------CCEEEEECTTSSHHHHHHHHHHCTTSBCSHHHHH
T ss_pred HHHHCCCEEECCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 98762660001025223424343356023203565554444521367875032313208999999984997648588999
Q ss_pred ---------CCC-------------CCCCCCCCCHHHHHHHHHHHHHHH-----HCCCCCCCCCCCCCHH-HHHHHHHHH
Q ss_conf ---------222-------------221024652135688899999975-----2255543336777613-689999999
Q gi|254780285|r 319 ---------DVD-------------RPLLKSDGSYTYFAADLAYFKCKY-----ERGFDNMIYVMGSDHS-GYVKRLEAV 370 (586)
Q Consensus 319 ---------~~d-------------~vl~rsDGt~~Y~t~DiA~~~~k~-----e~~~d~~iyVv~~~Q~-~h~~~v~~~ 370 (586)
..+ .++-..+|-..|..-|.+.+.... +..+.--+++.|.||. .|+--..+.
T Consensus 192 ~~~~~~~~~l~~~~~~~~~~~~~wgi~~p~~~~~~~~~~~d~~~~~~~~~~~~~~~~~p~di~~~G~D~~~~h~~~~~a~ 271 (497)
T 2csx_A 192 EIISFVKQGLKDLSVTRPRSRVKWGIPVPFDPEHTIYVWFDALFNYISALEDKVEIYWPADLHLVGKDILRFHTVYWPAF 271 (497)
T ss_dssp HHHHHHHHCCCCEECEEETTTCCSSEEETTEEEEEECSHHHHHTHHHHTTTTTHHHHCSCSCEEEEGGGHHHHHTHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCHHHCCCCCCCCCCCCEEECCCCCCHHHHHHHHHH
T ss_conf 99999970364357775422468886777789962020113332211120011244788722306765300579999999
Q ss_pred HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCC
Q ss_conf 99722663451153110110122110000012233024567777763211234555420-00123334477765320244
Q gi|254780285|r 371 AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKEN 449 (586)
Q Consensus 371 ~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~n 449 (586)
+..+|...++ .+++.+++.+ +|+ |||+..||+|..+|++++.|.+++||.+++. ....+..|+++.........
T Consensus 272 ~~a~~~~~p~-~~~~~g~~~~--~G~--KmSKS~gn~i~~~~~l~~~g~D~lR~~l~~~~~~~~d~~f~~~~~~~~~~~~ 346 (497)
T 2csx_A 272 LMSLGYELPK-KVFAHGWWTV--EGK--KMSKTLGNVVDPYEVVQEYGLDEVRYFLLREVPFGQDGDFSKKAILNRINGE 346 (497)
T ss_dssp HHHHTCCCCS-CEEEECCEES--SSS--BCCTTTTCCCCHHHHHHHHCHHHHHHHHHHSSCTTSCEECCHHHHHHHHHHT
T ss_pred HHHCCCCCCC-EEEECCCEEE--CCC--CCCCCCCCCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 9984999998-8985584863--685--2335688657999998732985889899860887776554799999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 36788888888999987533200246832234223552114998999999998421899999998528127999999999
Q gi|254780285|r 450 PVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLA 529 (586)
Q Consensus 450 t~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La 529 (586)
-..-+.....|+.....|....... ... ...+...+......+.++.+++..+..+..+++++
T Consensus 347 l~~~~~~~~~~~~~~~~k~~~~~~~------------~~~-----~~~~~~~~~~~~~~~~~~~d~~~f~~Al~~i~~~~ 409 (497)
T 2csx_A 347 LANEIGNLYSRVVNMAHKFLGGEVS------------GAR-----DEEYAKIAQESIKNYENYMEKVNFYKAIEEILKFT 409 (497)
T ss_dssp CCCCCHHHHHHHHHHHHHHSTTCBC------------CCC-----CTTHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHH------------HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999888876444310233321001------------234-----67899999988878999887468999999999999
Q ss_pred HHHHHHHHHC
Q ss_conf 9889998706
Q gi|254780285|r 530 SVFHGHWSHG 539 (586)
Q Consensus 530 ~~Fn~fY~~~ 539 (586)
...|.|.+..
T Consensus 410 ~~~N~yi~~~ 419 (497)
T 2csx_A 410 SYLNKYVDEK 419 (497)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHC
T ss_conf 9999999967
No 11
>2d5b_A Methionyl-tRNA synthetase; rossmann fold, class 1A AARS, isomerase, structural genomics, NPPSFA; 1.80A {Thermus thermophilus} SCOP: a.27.1.1 c.26.1.1 PDB: 1woy_A 1a8h_A 2d54_A
Probab=99.83 E-value=3e-18 Score=145.44 Aligned_cols=344 Identities=14% Similarity=0.120 Sum_probs=187.5
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
+|+.+|.-.=|-|++++|+||+|+.++.|.++|.++..||+|.-.--.+|-|..+-.-+. +.
T Consensus 2 ~k~~~it~~~py~ng~lHiGHa~~~v~~Di~~R~~r~~G~~V~~v~g~D~~g~~I~~~a~-------~~----------- 63 (500)
T 2d5b_A 2 EKVFYVTTPIYYVNAEPHLGHAYTTVVADFLARWHRLDGYRTFFLTGTDEHGETVYRAAQ-------AA----------- 63 (500)
T ss_dssp CCEEEEECCCEETTSCCCHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEECCSHHHHHHHH-------HH-----------
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHH-------HC-----------
T ss_conf 987898079988899723340587899999999999359956820862740699999999-------85-----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHH
Q ss_conf 10241000012788888757641343023799999997899887545558870875210001588730104579999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDN 279 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~ 279 (586)
|. . .+++ .+...+.+++++++|||.+|.+..-++.. ....+.+++..
T Consensus 64 ---g~--------------------~-------~~e~-~~~~~~~~~~~~~~lgi~~D~~~~t~~~~--~~~~v~~~~~~ 110 (500)
T 2d5b_A 64 ---GE--------------------D-------PKAF-VDRVSGRFKRAWDLLGIAYDDFIRTTEER--HKKVVQLVLKK 110 (500)
T ss_dssp ---TS--------------------C-------HHHH-HHHHHHHHHHHHHHTTCCCSEEEETTSHH--HHHHHHHHHHH
T ss_pred ---CC--------------------C-------HHHH-HHHHHHHHHHHHHHHCCCCCCCCCCCCHH--HHHHHHHHHHH
T ss_conf ---99--------------------9-------9999-99999999999999599888785369878--87789998888
Q ss_pred HHHCCCCCCCCCCCCCCCCCCC-----------------C--CCCCCCEEEEHHHCCCCCCCC-----------------
Q ss_conf 9974985113426755565420-----------------0--024781565101102222222-----------------
Q gi|254780285|r 280 LARQGYVYEGILPPPKSKTTQK-----------------C--DMDRKQLLFRSTMVGDDVDRP----------------- 323 (586)
Q Consensus 280 l~~~g~~~e~~~~~~~~~~~~~-----------------~--~~~~~~~~~~~~~~g~~~d~v----------------- 323 (586)
|.++|++|+......-+..+.. . ....+..++....+.+.....
T Consensus 111 l~~~G~~y~~~~~~~~~~~~~~~l~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (500)
T 2d5b_A 111 VYEAGDIYYGEYEGLYCVSCERFYTEKELVEGLCPIHGRPVERRKEGNYFFRMEKYRPWLQEYIQENPDLIRPEGYRNEV 190 (500)
T ss_dssp HHHTTCEEEEEEEEEEETTTTEECCTTTSBTTBCTTTCSBCEEEEEEEEEECGGGGHHHHHHHHHTCTTSEESHHHHHHH
T ss_pred HHHCCCCCCCCEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 98669831342674121254432248876420012356773773154134446666567888765175324606668888
Q ss_pred ------------CC--C-----------CCCCHHHHHHHHH--HH-------HHHHHCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ------------10--2-----------4652135688899--99-------9975225554333677761368999999
Q gi|254780285|r 324 ------------LL--K-----------SDGSYTYFAADLA--YF-------KCKYERGFDNMIYVMGSDHSGYVKRLEA 369 (586)
Q Consensus 324 ------------l~--r-----------sDGt~~Y~t~DiA--~~-------~~k~e~~~d~~iyVv~~~Q~~h~~~v~~ 369 (586)
+. + .++-.+|..-|-. ++ ...+.......+.+.|.++..+ ..++.
T Consensus 191 ~~~~~~~l~d~~~~~~~~~~~wg~~~P~~~~~~~~vWfds~~~~~~~~~~~~~~~~~~~~~~~~~~~g~d~~~~-~~~~~ 269 (500)
T 2d5b_A 191 LAMLAEPIGDLSISRPKSRVPWGIPLPWDENHVTFVWFDALLNYVSALDYPEGEAYRTFWPHAWHLIGKDILKP-HAVFW 269 (500)
T ss_dssp HHHHTSCCCCEECEEETTTCCSSCEETTEEEEEECHHHHHHTHHHHTTTTTTCHHHHHHGGGEEEEEEGGGHHH-HHTHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCCHHHHHCCCCHHHHHCCCCHHEEEECCCCCCC-CCHHH
T ss_conf 86665315002777766668876668899887777536543331556357606566503501212302344665-00577
Q ss_pred H--HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH-
Q ss_conf 9--997226634511531101101221100000122330245677777632112345554200-012333447776532-
Q gi|254780285|r 370 V--AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQ- 445 (586)
Q Consensus 370 ~--~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~- 445 (586)
. +..+|..... .++..+++ |..+|+ |||+..||+|..+|+++..|.+++||..++.. ...+..|+++.....
T Consensus 270 ~~~~~~~~~~~~~-~~~~hg~~-l~~~G~--KMSKS~gN~i~~~ell~~~g~D~lR~~l~~~~~~~~~~~~~~~~~~~~~ 345 (500)
T 2d5b_A 270 PTMLKAAGIPMYR-HLNVGGFL-LGPDGR--KMSKTLGNVVDPFALLEKYGRDALRYYLLREIPYGQDTPVSEEALRTRY 345 (500)
T ss_dssp HHHHHHHTCCCCS-EEEEECCE-ECTTSS--CCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHSCTTSCEECCHHHHHHHH
T ss_pred HHHHHHCCCCCCC-CEECCCCE-EEECCC--EEECCCCCCCCHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHH
T ss_conf 6787743887774-11114644-542564--5505488738899998722359899987613787776555789999999
Q ss_pred --CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Q ss_conf --024436788888888999987533200246832234223552114998999999998421899999998528127999
Q gi|254780285|r 446 --SKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAF 523 (586)
Q Consensus 446 --~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~ 523 (586)
.--|. +.....|+.+...+....... +.. .. .++..+..+...+.++.+++..+..+.
T Consensus 346 ~~~l~~~---~~~~~~~~~~~~~~~~~~~~~---~~~-----~~---------~~l~~~~~~~~~~~~~~d~~~~~~a~~ 405 (500)
T 2d5b_A 346 EADLADD---LGNLVQRTRAMLFRFAEGRIP---EPV-----AG---------EELAEGTGLAGRLRPLVRELKFHVALE 405 (500)
T ss_dssp HHHCCCC---CHHHHHHHHHHHHHHSTTBCC---CCC-----CC---------GGGGGGGGHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHCCCCCC---CCC-----HH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999---989999999976640267788---731-----07---------888889999999999999889999999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 9999999889998706
Q gi|254780285|r 524 YLYDLASVFHGHWSHG 539 (586)
Q Consensus 524 Yl~~La~~Fn~fY~~~ 539 (586)
-+++++...|.|.+..
T Consensus 406 ~i~~~v~~~N~yi~~~ 421 (500)
T 2d5b_A 406 EAMAYVKALNRYINEK 421 (500)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999999999999966
No 12
>1rqg_A Methionyl-tRNA synthetase; translation, dimerization, ligase; 2.90A {Pyrococcus abyssi} SCOP: a.27.1.1 c.26.1.1 g.41.1.1
Probab=99.81 E-value=1e-16 Score=134.63 Aligned_cols=351 Identities=16% Similarity=0.172 Sum_probs=198.7
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 1000223443224411777778568-999999998506664102014775314555678987532221024500066011
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVV-GDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiI-Gdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
|.+|.-.=|+||+++|+||+.++.| .|+++|-.|-.|++|.-.---++-|+.+..-+. +.
T Consensus 3 k~~Ittp~Py~NG~lHiGH~~~~~l~aDi~~Ry~rm~G~~v~~~~GtDeHG~~i~~~a~-------~~------------ 63 (722)
T 1rqg_A 3 RYMVTSALPYANGPIHAGHLAGAYLPADIFVRYLRLKGEDVVFICGTDEHGTPISFRAL-------KE------------ 63 (722)
T ss_dssp EEEEEECCCBTTSCCBHHHHHHHTHHHHHHHHHHHHTTCEEEEEEEEBCCSHHHHHHHH-------HH------------
T ss_pred EEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECEECCCHHHHHHHHH-------HC------------
T ss_conf 49996589898988566743337899999999998079955863866620799999999-------82------------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHHHHHHHHH
Q ss_conf 02410000127888887576413430237999999978998875455588708752100015887301045799999999
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNL 280 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i~~~i~~l 280 (586)
|. . . +++ .+...+.+++.+++|||.||.+..-++- .....+.+++.+|
T Consensus 64 --g~--------------------~----p---~e~-~d~~~~~~~~~~~~lgis~D~f~rT~~~--~~~~~v~~~f~~L 111 (722)
T 1rqg_A 64 --GR--------------------S----P---REI-VDEFHEQIKITFQRAKISFDFFGRTELP--IHYKLSQEFFLKA 111 (722)
T ss_dssp --TC--------------------C----H---HHH-HHHHHHHHHHHHHHHTCCCSEEEETTSH--HHHHHHHHHHHHH
T ss_pred --CC--------------------C----H---HHH-HHHHHHHHHHHHHHCCCCCCCCCCCCCH--HHHHHHHHHHHHH
T ss_conf --99--------------------9----9---999-9999999999999839805589757998--9999999999999
Q ss_pred HHCCCCCCCCCCCCCC---CCC---------------------------------------------CCCCCCCCCEEEE
Q ss_conf 9749851134267555---654---------------------------------------------2000247815651
Q gi|254780285|r 281 ARQGYVYEGILPPPKS---KTT---------------------------------------------QKCDMDRKQLLFR 312 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~---~~~---------------------------------------------~~~~~~~~~~~~~ 312 (586)
.++|++|++.....-+ ... ........+++++
T Consensus 112 ~~~G~Iy~~~~~~~yc~~~~~~l~d~~v~g~cp~~~~~d~~g~~c~~~~~~~~~~~~~~p~c~r~~~~ve~~~~~qwF~k 191 (722)
T 1rqg_A 112 YENGHLVKKVTKQAYCEHDKMFLPDRFVIGTCPYCGAEDQKGDQCEVCGRPLTPEILINPRCAICGRPISFRDSAHYYIK 191 (722)
T ss_dssp HHTTCEEEEEEEEEEBTTTTBCCCGGGCCSBCSSSCCSCCCTTTCSSSCCCCCTTSSBSCBCTTTCCBCEEEEEEEEEEC
T ss_pred HHCCCCCCCCEEECCCCCCCCCCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCEEEEEEHHHHHHH
T ss_conf 97799831463545677635261562034524665654455542024577467200368855777974069851334430
Q ss_pred HHHCCC--------------------------CCCCCCC--------------CCCCCHHHHHHHH--HHHHHH---H--
Q ss_conf 011022--------------------------2222210--------------2465213568889--999997---5--
Q gi|254780285|r 313 STMVGD--------------------------DVDRPLL--------------KSDGSYTYFAADL--AYFKCK---Y-- 345 (586)
Q Consensus 313 ~~~~g~--------------------------~~d~vl~--------------rsDGt~~Y~t~Di--A~~~~k---~-- 345 (586)
.+.+.+ -.|..|- ...|-..|.--|- .|.-.. .
T Consensus 192 l~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~l~Dw~ISRq~~WGipiP~~~~~~~~~v~yvw~da~~~y~s~~~~~~~~ 271 (722)
T 1rqg_A 192 MQDFAERLKRWIEKQPWKPNVKNMVLSWIEEGLEERAITRDLNWGIPVPLDEEDMKGKVLYVWFEAPIGYISITIEHFKR 271 (722)
T ss_dssp GGGTHHHHHHHHHSSCCCHHHHHHHHHHHTTCCCCEECEECCSSSCBCSCCCSSSTTCEECHHHHGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCEEEEEECCCCCCCCHHCCCCCCC
T ss_conf 68888888652025799812323110443057633222344777539783357899859998434542100001345311
Q ss_pred -HCC------------CCCCCCCCCCCHHHHHHHHH--HHHHHHCCC---------CCCCEEEECCHHHCCCCCCCCCCC
Q ss_conf -225------------55433367776136899999--999972266---------345115311011012211000001
Q gi|254780285|r 346 -ERG------------FDNMIYVMGSDHSGYVKRLE--AVAAAVSEK---------KAQINVLLCELVRLYRDGMPIKMS 401 (586)
Q Consensus 346 -e~~------------~d~~iyVv~~~Q~~h~~~v~--~~~~~lg~~---------~~~~~~~~~~~v~l~~dg~~~kms 401 (586)
... .-..+.++|-|- ..|..++ +.+...|.. ...-.++..+++ ..+|+ |||
T Consensus 272 ~g~~~~~~~~w~~~~~~~~~~~~~gkDi-~~fh~~~~pa~l~~~G~~~~~~~~~~~~~~~~v~~hg~l--~~~G~--KMS 346 (722)
T 1rqg_A 272 IGKPNEWKKYWLNIDGQTRVIHFIGKDN-IPFHAIFWPAFLMAYGKYKDEEVEAEWNLPYDIPANEYL--TLEGK--KFS 346 (722)
T ss_dssp TTCTTTTHHHHBCSSCCEEEEEEEEGGG-HHHHHTHHHHHHHTTCCBCSSSCCBCBCCCSBCCEECCE--EETTE--ECB
T ss_pred CCCCCHHHHHHHCCCCCCCEEEEECCCC-HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCEEEEECCEE--EECCC--EEE
T ss_conf 4982056676421368842377525763-544203136999873743002223456785289864189--61685--411
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 223302456777776321123455542000-1233344777653202443678888888899998753320024683223
Q gi|254780285|r 402 KRAGDFITLRHVVDEVGSDSVRFMMLWRKN-SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480 (586)
Q Consensus 402 tR~G~~v~l~dll~evg~~aiky~~L~~~~-~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~ 480 (586)
+.+||+|...|++++.|.+++||++++..+ ..+.+|+++........+-+--+--..-|+.+.+.|....
T Consensus 347 KS~GNvIdp~dli~~ygaD~lR~~l~~~~~~~~d~df~~~~~~~~~n~~l~~~l~N~~~r~~~~~~k~~~~--------- 417 (722)
T 1rqg_A 347 TSRNWAIWVHEFLDVFPADYLRYYLTTIMPETRDSDFSFSDFKVRINEELVNNLGNFVHRALTFVNRYFDG--------- 417 (722)
T ss_dssp TTTTBSCBHHHHTTTSCHHHHHHHHHHTCCSSSCEEECHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHSTT---------
T ss_pred CCCCCCCCHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------
T ss_conf 03787378899875058278999999708887775302789999988887765547999999745521478---------
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 422355211499899999999842189999999852812799999999998899987068
Q gi|254780285|r 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540 (586)
Q Consensus 481 ~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~ 540 (586)
.++.....++..+.++..+......+.++.++++.+..++.+++++..-|.|++.+.
T Consensus 418 ---~~p~~~~~~~~d~~il~~~~~~~~~~~~~~~~~~f~~a~~~i~~~~~~~n~yi~~~~ 474 (722)
T 1rqg_A 418 ---VVPERGELDELDREALEEIEKAFKEVGELIMNYRFKDALKRVMSLASFGNRYFDHKQ 474 (722)
T ss_dssp ---BCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ---778731000246999999999999999998635899999999999999999999708
No 13
>3c8z_A Cysteinyl-tRNA synthetase; cysteine ligase, rossmann fold, Cys-SA inhibitor, zinc binding, ATP-binding, aminoacyl-tRNA synthetase; HET: 5CA 1PE EPE; 1.60A {Mycobacterium smegmatis}
Probab=99.80 E-value=1.6e-16 Score=133.27 Aligned_cols=316 Identities=17% Similarity=0.138 Sum_probs=187.0
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf 54100022344322441177777856899999999850666410201477531455567898753222102450006601
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEG 199 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~ 199 (586)
+++|-+=-+.|-|..++||||+|++|++|+|+|+|++.||+|.....+.|.|.++-..+.. +.
T Consensus 37 ~~~v~~Y~CGpTvy~~~HIGhaRt~v~~D~l~R~L~~~G~~V~~v~nitDiddKIi~~A~~------~g----------- 99 (414)
T 3c8z_A 37 GPTATMYVCGITPYDATHLGHAATYLTFDLVHRLWLDAGHTVQYVQNVTDVDDPLFERAER------DG----------- 99 (414)
T ss_dssp CSEEEEEECCCCTTSCCBHHHHHHHHHHHHHHHHHHHTTCEEEEEEEECCSCHHHHHHHHH------HT-----------
T ss_pred CCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHH------CC-----------
T ss_conf 8951598589977888640003269999999999998599669986568533899999875------49-----------
Q ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE-CHHHHHHCCHHHHHHHHH
Q ss_conf 1024100001278888875764134302379999999789988754555887087521000-158873010457999999
Q gi|254780285|r 200 YYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFI-SEDDFHRGDPSPIRDIID 278 (586)
Q Consensus 200 ~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~-~Es~~~~~~~~~i~~~i~ 278 (586)
.. .+++. +...+.+.+.++.|||..+... .-+++ ...+...++
T Consensus 100 ----~~----~~e~a------------------------~~~~~~f~~~~~~L~i~~~~~~~rate~----i~~ii~~i~ 143 (414)
T 3c8z_A 100 ----ID----WRTLG------------------------DRETQLFREDMAALRVLPPHDYVAATDA----IAEVVEMVE 143 (414)
T ss_dssp ----CC----HHHHH------------------------HHHHHHHHHHHHHTTCCCCSEEEEGGGC----HHHHHHHHH
T ss_pred ----CC----HHHHH------------------------HHHHHHHHHHHHHHCCCCCCEEECCCCC----HHHHHHHHH
T ss_conf ----99----99999------------------------9999999999987468999566314002----999999999
Q ss_pred HHHHCCCCCCCCCCCCCC----------CCC-----------------------CCCCCCCCCEEEEHHHCCCCCCCCCC
Q ss_conf 999749851134267555----------654-----------------------20002478156510110222222210
Q gi|254780285|r 279 NLARQGYVYEGILPPPKS----------KTT-----------------------QKCDMDRKQLLFRSTMVGDDVDRPLL 325 (586)
Q Consensus 279 ~l~~~g~~~e~~~~~~~~----------~~~-----------------------~~~~~~~~~~~~~~~~~g~~~d~vl~ 325 (586)
+|.++|++|+.......+ .+. ..-+..+-.+| +.+..|+..- .--
T Consensus 144 ~l~~kg~aY~~~~~~~~~vyf~~~~~~~yg~l~~~~~~~~~~~~~~~~~~~~~~~K~~~~DF~Lw-k~~~~~~~~w-~Sp 221 (414)
T 3c8z_A 144 KLLASGAAYIVEDAEYPDVYFRADATAQFGYESGYDRDTMLTLFAERGGDPDRPGKSDQLDALLW-RAERPGEPSW-PSP 221 (414)
T ss_dssp HHHHHTSEEECSCSSCCCEEECTTSSTTTTTTTCCCHHHHHHHHHHTTCCTTCTTCSSTTCEEEE-EECCTTSCCB-CCT
T ss_pred HHHHHHHCCCCCCCCCCCEEEEECCHHHCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCHHHHHHH-CCCCCCCCCC-CCC
T ss_conf 98642320012687554279983033314742111156665554320243200002587776411-0266578763-488
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHH--HHHHHHHHHHHHCC-CCCCCEEEECCHHHCCCCCCCCCCCC
Q ss_conf 2465213568889999997522555433367776136--89999999997226-63451153110110122110000012
Q gi|254780285|r 326 KSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSG--YVKRLEAVAAAVSE-KKAQINVLLCELVRLYRDGMPIKMSK 402 (586)
Q Consensus 326 rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~--h~~~v~~~~~~lg~-~~~~~~~~~~~~v~l~~dg~~~kmst 402 (586)
.++|-+.+..-+-|.+...+...+| |..-|.|+.. |-..........|. +.++ .-++.+++.. +|+ |||+
T Consensus 222 wG~GrPgWHiECsam~~~~lg~~~D--IH~GG~Dl~fPHHeneiAq~~a~~g~~~~~~-~w~h~g~l~~--~g~--KMSK 294 (414)
T 3c8z_A 222 FGRGRPGWHVECSAIALTRIGTGLD--IQGGGSDLIFPHHEYSAAHAESVTGERRFAR-HYVHTGMIGW--DGH--KMSK 294 (414)
T ss_dssp TCSEEECHHHHHHHHHHHHTCSCEE--EEEEEGGGTTTHHHHHHHHHHHHHCCSCSEE-EEEEECCBC------------
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCEE--EECCCCCCCCCCHHHHHHHHHHHHCCCCCCH-HHEECCEEEE--CCC--CCCC
T ss_conf 7762884674424888740698335--7405565566316769999999749974012-1223337985--064--6777
Q ss_pred CCCCHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 23302456777776-32112345554200012333447776532024436788888888999987533200246832234
Q gi|254780285|r 403 RAGDFITLRHVVDE-VGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFP 481 (586)
Q Consensus 403 R~G~~v~l~dll~e-vg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~ 481 (586)
+.||+++++|++++ ++..++||++|+..-.+++.|+++.+.. .+ + +..|+.+.++.....
T Consensus 295 SlGN~~~~~d~l~~~~~~~~~R~~ll~~hYr~~l~fs~e~l~~-a~-~-------~l~rl~~~~~~~~~~---------- 355 (414)
T 3c8z_A 295 SRGNLVLVSQLRAQGVDPSAIRLGLFSGHYREDRFWSNEVLDE-AN-A-------RLARWRSATALPEAP---------- 355 (414)
T ss_dssp -----CBHHHHHHTTCCHHHHHHHHHTSCTTSCBCCCHHHHHH-HH-H-------HHHHHHHHHTSSCBS----------
T ss_pred CCCCCCCHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHH-HH-H-------HHHHHHHHHHCCCCC----------
T ss_conf 6887031999986279889989999861157511389999999-99-9-------999999986154567----------
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2235521149989999999984218999999-98528127999999999988999
Q gi|254780285|r 482 RNVIPQESEFDTSELQLIVHLAEYPRVIENA-TIAQEPYKLAFYLYDLASVFHGH 535 (586)
Q Consensus 482 ~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a-~~~~~P~~l~~Yl~~La~~Fn~f 535 (586)
...+ +.+-+.+| ..++.-......++++++..|+.
T Consensus 356 ----------~~~~---------~~~~f~~al~DDlntp~Al~~l~~li~~~n~~ 391 (414)
T 3c8z_A 356 ----------DATD---------VIARVRQYLADDLDTPKALAALDGWCTDALSY 391 (414)
T ss_dssp ----------CCHH---------HHHHHHHHHHBTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------CHHH---------HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf ----------5368---------99999999876788589999999999999864
No 14
>1gax_A Valrs, valyl-tRNA synthetase; protein-RNA complex, rossmann fold, coiled coil, riken structural genomics/proteomics initiative, RSGI; HET: VAA; 2.90A {Thermus thermophilus} SCOP: a.2.7.3 a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1ivs_A* 1iyw_A
Probab=99.71 E-value=5e-15 Score=122.82 Aligned_cols=163 Identities=23% Similarity=0.242 Sum_probs=98.7
Q ss_pred CCCCCCHH-HHHHHHHHH-HHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-
Q ss_conf 36777613-689999999-997226634511531101101221100000122330245677777632112345554200-
Q gi|254780285|r 354 YVMGSDHS-GYVKRLEAV-AAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK- 430 (586)
Q Consensus 354 yVv~~~Q~-~h~~~v~~~-~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~- 430 (586)
+++|-|+- .|+...... +...|.... -.++..|+| +..+|+ |||+-+||+|..+|++++-|.+|+||++++..
T Consensus 485 ~~~G~Dii~~w~~~~~~~~~~~~~~~p~-k~v~~hG~v-l~~~G~--KMSKS~GNvi~p~~~i~kyGaDalR~~l~~~~~ 560 (862)
T 1gax_A 485 LVTGYDILFLWVSRMEVSGYHFMGERPF-KTVLLHGLV-LDEKGQ--KMSKSKGNVIDPLEMVERYGADALRFALIYLAT 560 (862)
T ss_dssp EEEEGGGTTTTHHHHHHHHHHHSSSCSB-SEEEEECCE-ECTTSC--BCCTTTTCCCCHHHHHHHHCHHHHHHHHHHHCC
T ss_pred EEEEEHHHHHHHHHHHHHHHHHCCCCCC-CEEEEECEE-ECCCCC--CCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf 9862567777999999975764498886-668871419-988986--677889997998999988197198888887506
Q ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 01233344777653202443678888888899998753320024683223422355211499899999999842189999
Q gi|254780285|r 431 NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIE 510 (586)
Q Consensus 431 ~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~ 510 (586)
+..+..||++.+... .|-+--+..+...+ +.... .... .....+...+.++..+......+.
T Consensus 561 ~~~D~~~~~~~~~~~--~n~~~kl~n~~~~~---~~~~~----~~~~---------~~~~~~~~d~wils~l~~~~~~v~ 622 (862)
T 1gax_A 561 GGQDIRLDLRWLEMA--RNFANKLYNAARFV---LLSRE----GFQA---------KEDTPTLADRFMRSRLSRGVEEIT 622 (862)
T ss_dssp TTCCEECCHHHHHHH--HHHHHHHHHHHHHH---HHHSS----SCCC---------CBCCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHH--HHHHHHHHHHHHHH---HHCCC----CCCC---------CCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 776422556999999--99999999999999---96213----4666---------667751778999988899999999
Q ss_pred HHHHHCCCHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 9998528127999999999-988999870
Q gi|254780285|r 511 NATIAQEPYKLAFYLYDLA-SVFHGHWSH 538 (586)
Q Consensus 511 ~a~~~~~P~~l~~Yl~~La-~~Fn~fY~~ 538 (586)
.+.+.+..+..++.+++.. ..|..+|-.
T Consensus 623 ~~~~~~~~~~a~~~i~~f~~~~~~~~y~e 651 (862)
T 1gax_A 623 ALYEALDLAQAAREVYELVWSEFCDWYLE 651 (862)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 87774689999999999889999888998
No 15
>1ffy_A Isoleucyl-tRNA synthetase; protein-RNA complex, metal IONS, editing tRNA synthetase, double-sieve, ligase/RNA, mupiroci; HET: MRC; 2.20A {Staphylococcus aureus} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1qu2_A* 1qu3_A*
Probab=99.69 E-value=4.2e-14 Score=116.37 Aligned_cols=170 Identities=20% Similarity=0.240 Sum_probs=110.3
Q ss_pred CCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 336777613-6899999999972266345115311011012211000001223302456777776321123455542000
Q gi|254780285|r 353 IYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRKN 431 (586)
Q Consensus 353 iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~~ 431 (586)
+|+.|.||- .||.........+....+--.++..||| +.++|+ |||+.+||+|..++++++-|.+++|+..++..+
T Consensus 551 l~i~G~D~~r~wf~~~l~~~~~~~~~~Pfk~v~~hG~v-ld~~G~--KMSKS~GNvi~P~~ii~~yGaD~lRl~~~~~~~ 627 (917)
T 1ffy_A 551 MYLEGSDQYRGWFNSSITTSVATRGVSPYKFLLSHGFV-MDGEGK--KMSKSLGNVIVPDQVVKQKGADIARLWVSSTDY 627 (917)
T ss_dssp EEEEEGGGGTTHHHHHHHHHHHHHSSCSBSEEEEECCE-ECTTSC--CCCSSSSCCCCHHHHHHHTCHHHHHHHHHTSCT
T ss_pred EEECCHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCC
T ss_conf 03336079750789998776641798851078741329-999988--776678897795675343081699999970985
Q ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 12333447776532024436788888888999987533200246832234223552114998999999998421899999
Q gi|254780285|r 432 SELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIEN 511 (586)
Q Consensus 432 ~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~ 511 (586)
..++.|+.+.+... . +. +-++...+|-.-......+. .....+ ...+....+-++..+..+-..+.+
T Consensus 628 ~~d~~~~~~~~~~~-~-~~-------~~kl~n~~r~~~~~~~~~~~---~~~~~~-~~~l~~lD~~il~~l~~~i~~v~~ 694 (917)
T 1ffy_A 628 LADVRISDEILKQT-S-DD-------YRKIRNTLRFMLGNINDFNP---DTDSIP-ESELLEVDRYLLNRLREFTASTIN 694 (917)
T ss_dssp TSCEECCHHHHHHH-H-HH-------HHHHHHHHHHHHHTSTTCCH---HHHCCC-GGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHH-H-HH-------HHHHHHHHHHHHHCCCCCCC---CCCCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 46741178889999-9-99-------99999999999850123474---224554-344338889999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHH-HHHHHHHH
Q ss_conf 9985281279999999999-88999870
Q gi|254780285|r 512 ATIAQEPYKLAFYLYDLAS-VFHGHWSH 538 (586)
Q Consensus 512 a~~~~~P~~l~~Yl~~La~-~Fn~fY~~ 538 (586)
+++++.-|..+.-+++... .+++||-.
T Consensus 695 ~~e~~~f~~~~~~l~~F~~~~ls~~Y~~ 722 (917)
T 1ffy_A 695 NYENFDYLNIYQEVQNFINVELSNFYLD 722 (917)
T ss_dssp HHHTTCHHHHHHHHHHHHHCCCCCCHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9971228999999999999988899999
No 16
>1li5_A Cysrs, cysteinyl-tRNA synthetase, transfer RNA-Cys; cysteine, E.coli, ligase; 2.30A {Escherichia coli} SCOP: a.27.1.1 c.26.1.1 PDB: 1li7_A 1u0b_B
Probab=99.61 E-value=4.4e-12 Score=102.20 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=178.7
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 65541000223443224411777778568999999998506664102014775314555678987532221024500066
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLP 197 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~ 197 (586)
-.+.+|-+=-+.|-|..+.||||+|+.|..|.|+|.|++.||+|.-.-=+-|.+-.+
T Consensus 18 ~~~~~v~~Y~CGpTvy~~~HiGhar~~v~~D~l~R~l~~~G~~V~~v~nitDiddKi----------------------- 74 (461)
T 1li5_A 18 IHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKI----------------------- 74 (461)
T ss_dssp SSTTEEEEEECCCBSSSCCBHHHHHHHHHHHHHHHHHHHHTCEEEEEECBBCCSHHH-----------------------
T ss_pred CCCCEEEEEECCCCCCCCCCHHHCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCHHH-----------------------
T ss_conf 899958999468857898441014029999999999997599518997416123899-----------------------
Q ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CEECHHHHHHCCHHHHHHH
Q ss_conf 011024100001278888875764134302379999999789988754555887087521-0001588730104579999
Q gi|254780285|r 198 EGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD-IFISEDDFHRGDPSPIRDI 276 (586)
Q Consensus 198 e~~~~~~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD-~~~~Es~~~~~~~~~i~~~ 276 (586)
.....+. ..... ++ .+...+.+.+.++.|||..+ .+...++.. ..+-++
T Consensus 75 ----------------~~~A~~~------g~~~~---e~-~~~~~~~f~~~~~~L~i~~~~~~~r~t~~i----~~~i~~ 124 (461)
T 1li5_A 75 ----------------IKRANEN------GESFV---AM-VDRMIAEMHKDFDALNILRPDMEPRATHHI----AEIIEL 124 (461)
T ss_dssp ----------------HHHHHHT------TCCHH---HH-HHHHHHHHHHHHHHTTCCCCSBCCBGGGCH----HHHHHH
T ss_pred ----------------HHHHHHH------CCCHH---HH-HHHHHHHHHHHHHHHCCCCCCEEECCCHHH----HHHHHH
T ss_conf ----------------9999984------95999---99-999999999999995799998741114899----999999
Q ss_pred HHHHHHCCCCCCCCCC-----CCCCCCCCCCC------CCCCCEEEEHHHCC-CCCCCCCCC--CCCCHHHHH-------
Q ss_conf 9999974985113426-----75556542000------24781565101102-222222102--465213568-------
Q gi|254780285|r 277 IDNLARQGYVYEGILP-----PPKSKTTQKCD------MDRKQLLFRSTMVG-DDVDRPLLK--SDGSYTYFA------- 335 (586)
Q Consensus 277 i~~l~~~g~~~e~~~~-----~~~~~~~~~~~------~~~~~~~~~~~~~g-~~~d~vl~r--sDGt~~Y~t------- 335 (586)
+++|.++|++|..... ..+........ ...+.-. ...... ...|.+|-| ..|-+-.-+
T Consensus 125 i~~L~~~g~aY~~~~g~vyf~~~~~~~yg~l~~~~~~~~~~~~~~-~~~~~K~~~~DF~Lwk~~~~~e~~w~spWG~grP 203 (461)
T 1li5_A 125 TEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARV-DVVDDKRNPMDFVLWKMSKEGEPSWPSPWGAGRP 203 (461)
T ss_dssp HHHHHHTTSEEECTTSCEEECGGGCTTTTTTTTC-----------------CCSTTCEEEEEECCTTSCCBCCTTCSEEE
T ss_pred HHHHHHCCCEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 999986798897268867335655301155110020001246765-6565678836466538788998766788775589
Q ss_pred ---HHHHHHHHHHHCCCCCCCCCCCCCHHH-HHHHHHHHHHHH-CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHH
Q ss_conf ---889999997522555433367776136-899999999972-266345115311011012211000001223302456
Q gi|254780285|r 336 ---ADLAYFKCKYERGFDNMIYVMGSDHSG-YVKRLEAVAAAV-SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITL 410 (586)
Q Consensus 336 ---~DiA~~~~k~e~~~d~~iyVv~~~Q~~-h~~~v~~~~~~l-g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l 410 (586)
...+|...++ .+..--|..-|.|... |-..-.+..+.. |.+.++ .-++.|++.. +|. |||+..||++++
T Consensus 204 gWhiecs~m~~~~-lg~~~Dih~gG~Dl~fpHhene~aq~~a~~g~~~~~-~w~h~g~~~~--~g~--KMSKSlgn~~~~ 277 (461)
T 1li5_A 204 GWHIECSAMNCKQ-LGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQYVN-YWMHSGMVMV--DRE--KMSKSLGNFFTV 277 (461)
T ss_dssp CSSHHHHHHHHHH-HCSSEEEEECBGGGTTTHHHHHHHHHHHHSSSCCEE-EECCBCCEEE--TTB--CCCGGGTCCCBH
T ss_pred CHHHHHHHHHHHH-HCHHHHCCCCCHHHCCCCCCCHHHHHHHHHCCCCCH-HHHHCCCCCC--CCC--CCCCCCCCEEEH
T ss_conf 7266758999988-270532265754106886435999999875588500-7763582225--876--446446887448
Q ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 77777632112345554200012333447776532024436788888888999987533200246832234223552114
Q gi|254780285|r 411 RHVVDEVGSDSVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESE 490 (586)
Q Consensus 411 ~dll~evg~~aiky~~L~~~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~ 490 (586)
.|+++..+..++||++|+..-.+.++|+++.+.. .. ++ ..|+.+-++.+..... +
T Consensus 278 ~~~~~~~~~~~~R~~lLs~hYR~pl~fs~e~L~~-A~-~~-------l~rl~~~l~~~~~~~~-------~--------- 332 (461)
T 1li5_A 278 RDVLKYYDAETVRYFLMSGHYRSQLNYSEENLKQ-AR-AA-------LERLYTALRGTDKTVA-------P--------- 332 (461)
T ss_dssp HHHHTTSCHHHHHHHHHSSCTTSCEEECHHHHHH-HH-HH-------HHHHHHHHTTCCTTSC-------C---------
T ss_pred HHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHH-HH-HH-------HHHHHHHHHHHHHCCC-------C---------
T ss_conf 8864127769999999853678864457046999-99-99-------9999999985552147-------5---------
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 99899999999842189999999852812799999999998899987068666665435787899999999999999999
Q gi|254780285|r 491 FDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMMRLQLVHAVASII 570 (586)
Q Consensus 491 ~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~~~~~~~~~v~~~~~~~~~~~RL~L~~a~~~vL 570 (586)
....+ + ...+++.-..++.-......++++++..|+.=.. +.. ...+.+..|
T Consensus 333 ~~~~~--~------~~~f~~aL~DDlNTp~Ala~l~~lvk~in~~~~~-------------~~~-------~~~~~~~~L 384 (461)
T 1li5_A 333 AGGEA--F------EARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAE-------------DMA-------AANAMASHL 384 (461)
T ss_dssp CSCHH--H------HHHHHHHHHBTSCHHHHHHHHHHHHHHHHHHHHH-------------CHH-------HHHHHHHHH
T ss_pred CCHHH--H------HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCC-------------CHH-------HHHHHHHHH
T ss_conf 21125--8------9999999876226799999999999998752233-------------589-------999999999
Q ss_pred HHHHHHCCC
Q ss_conf 998731587
Q gi|254780285|r 571 NSGLNIIGV 579 (586)
Q Consensus 571 ~~~L~LLGI 579 (586)
.....+|||
T Consensus 385 ~~~~~vLGl 393 (461)
T 1li5_A 385 RKLSAVLGL 393 (461)
T ss_dssp HHHHTTTTC
T ss_pred HHHHHHCCC
T ss_conf 999996378
No 17
>1wkb_A Leucyl-tRNA synthetase; leucine, aminoacyl-tRNA, editing, amino acid, aminoacylation, trnaLeu, structural genomics; 2.05A {Pyrococcus horikoshii}
Probab=99.53 E-value=4.7e-10 Score=87.98 Aligned_cols=129 Identities=15% Similarity=0.198 Sum_probs=85.4
Q ss_pred EEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 53110110122110000012233024567777763211234555420-00123334477765320244367888888889
Q gi|254780285|r 383 VLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKENPVFYVQYAYARC 461 (586)
Q Consensus 383 ~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~ 461 (586)
++..+++. .+|+ |||+.+||+|...+++++-|.+++|+.+++. ....++.|+.+.+... .+ ...|+
T Consensus 638 v~~~g~~~--~~G~--KMSKS~GNvidp~~ii~~yGaD~lRl~l~~~~~~~~d~~~~~~~i~~~--~~-------~l~~~ 704 (810)
T 1wkb_A 638 IAVNGFGT--LEGQ--KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RK-------QIERF 704 (810)
T ss_dssp EEEECCEE--ETTB--CCCTTTTCCCBHHHHHHHHCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HH-------HHHHH
T ss_pred EEEEEECC--CCCE--ECCCCCCCCCCHHHHHHHHCHHHHHHHHHHCCCCCCCCCCCHHHHHHH--HH-------HHHHH
T ss_conf 13444305--6761--489988887997999987190999999981498668877789999999--99-------99999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHH
Q ss_conf 999875332002468322342235521149989999999984218999999985281279999999-9998899987
Q gi|254780285|r 462 RSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYD-LASVFHGHWS 537 (586)
Q Consensus 462 ~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~-La~~Fn~fY~ 537 (586)
.+++.+..+... .......+.++.++..+.++-..+.++.+++..+..+..++. +...++ +|-
T Consensus 705 ~~~~~~~~~~~~------------~~~~~~~~~D~~il~~l~~~i~~v~~~~~~~~~~~a~~~~~~~~~~~~~-~y~ 768 (810)
T 1wkb_A 705 YELISQFAEYEV------------KGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLR-WYL 768 (810)
T ss_dssp HHHHHHHHTCCC------------CSCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH-HHH
T ss_pred HHHHHHHHHCCC------------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHH
T ss_conf 999998753566------------8887878899999999999999999999875988999999999999879-999
No 18
>1ile_A Ilers, isoleucyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus HB8} SCOP: a.27.1.1 b.51.1.1 c.26.1.1 PDB: 1jzq_A* 1jzs_A*
Probab=99.51 E-value=1.7e-11 Score=98.12 Aligned_cols=172 Identities=19% Similarity=0.253 Sum_probs=105.7
Q ss_pred CCCCCCCCHH-HHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-
Q ss_conf 3336777613-68999999999722663451153110110122110000012233024567777763211234555420-
Q gi|254780285|r 352 MIYVMGSDHS-GYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR- 429 (586)
Q Consensus 352 ~iyVv~~~Q~-~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~- 429 (586)
-+|+.|.||. .|++.+......+-...+--..+..|+| +.++|+ |||+.+||+|+.+|++++-|.+++|++++..
T Consensus 546 D~~~~G~D~~r~w~~~~~~~~~~~~~~~pfk~l~~~G~V-ld~~G~--KMSKSkGNvi~p~~ii~~yGaD~lRl~l~~~~ 622 (821)
T 1ile_A 546 DFIAEGIDQTRGWFNSLHQLGVMLFGSIAFKNVICHGLI-LDEKGQ--KMSKSKGNVVDPWDIIRKFGADALRWYIYVSA 622 (821)
T ss_dssp SBEEEEGGGGGTHHHHHHHHHHHHHSSCSBSEEEEECCE-ECTTSS--CCCTTTTCCCCHHHHHTTTCHHHHHHHHHHHS
T ss_pred EEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCEEEECCEE-ECCCCC--CCCCCCCCCCCHHHHHHHCCHHHHHHHHHCCC
T ss_conf 089731077766899999855554289755043667659-999998--78778999899899986549889999762057
Q ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 00123334477765320244367888888889999875332002468322342235521149989999999984218999
Q gi|254780285|r 430 KNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVI 509 (586)
Q Consensus 430 ~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi 509 (586)
.+..+..|+.+.+.... .+..--+.-+..++.+...... .+. ............++.++..|..+-..+
T Consensus 623 ~~~~d~~~~~~~v~~~~-~~~~~kl~n~~~~~~~~~~~~~---~~~-------~~~~~~~~~~~~D~~il~~l~~~i~~v 691 (821)
T 1ile_A 623 PPEADRRFGPNLVRETV-RDYFLTLWNVYSFFVTYANLDR---PDL-------KNPPPPEKRPEMDRWLLARMQDLIQRV 691 (821)
T ss_dssp CSSSCEECCHHHHHHHH-HHTHHHHHHHHHHHHHHHHHHC---CCT-------TSCCCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCC---CCC-------CCCCCHHHCCHHHHHHHHHHHHHHHHH
T ss_conf 87777545467888999-9999988899999987402344---432-------357770114598999999999999999
Q ss_pred HHHHHHCCCHHHHHHHHHHH-HHHHHHHH
Q ss_conf 99998528127999999999-98899987
Q gi|254780285|r 510 ENATIAQEPYKLAFYLYDLA-SVFHGHWS 537 (586)
Q Consensus 510 ~~a~~~~~P~~l~~Yl~~La-~~Fn~fY~ 537 (586)
..+.+++..+..+..+++++ ..|++||-
T Consensus 692 ~~~~e~~~f~~a~~~l~~f~~~~l~~~Y~ 720 (821)
T 1ile_A 692 TEALEAYDPTTSARALRDFVVEDLSQWYV 720 (821)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHSSTTTH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99998379999999999999999889999
No 19
>1wz2_A Leucyl-tRNA synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase/RNA complex; 3.21A {Pyrococcus horikoshii OT3}
Probab=99.49 E-value=2.8e-10 Score=89.54 Aligned_cols=121 Identities=16% Similarity=0.219 Sum_probs=77.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 110000012233024567777763211234555420-0012333447776532024436788888888999987533200
Q gi|254780285|r 394 DGMPIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWR-KNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIF 472 (586)
Q Consensus 394 dg~~~kmstR~G~~v~l~dll~evg~~aiky~~L~~-~~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~ 472 (586)
+|+ |||+.+||+|..++++++-|.+++|+++++. ....++.|+.+.+... .+. ++ |+-.++....+.
T Consensus 647 ~G~--KMSKSkGNvvdP~~ii~~yGAD~lRl~l~~~~~~~~d~~~~~~~i~~~--~~~---l~----~~~~~~~~~~~~- 714 (967)
T 1wz2_A 647 EGQ--KMSKSKGNVLNFIDAIEENGADVVRLYIMSLAEHDSDFDWRRKEVGKL--RKQ---IE----RFYELISQFAEY- 714 (967)
T ss_dssp SSS--CCCTTTCCCCBHHHHHHTTCHHHHHHHHHHHCCTTCCEEECHHHHHHH--HHH---HH----HHHHHHHHHHSS-
T ss_pred CCC--CCCCCCCCCCCHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHH--HHH---HH----HHHHHHHHHHHC-
T ss_conf 673--336668886547789874199877899853699775146665788888--999---99----999999876530-
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 24683223422355211499899999999842189999999852812799999999998899987
Q gi|254780285|r 473 PDLDFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWS 537 (586)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~ 537 (586)
+ ........+.++.++..+.++-.-+.++++++..+..+..++.......++|-
T Consensus 715 ---~--------~~~~~~~~~~D~~il~~l~~~i~~v~~~~~~~~~~~a~~~~~~~~~~~~~~y~ 768 (967)
T 1wz2_A 715 ---E--------VKGNVELKDIDRWMLHRLNKAIKETTNALEEFRTRTAVQWAFYSIMNDLRWYL 768 (967)
T ss_dssp ---C--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHHHHH
T ss_pred ---C--------CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---3--------44665577889999999999999999999985142699999999999889999
No 20
>3al0_C Glutamyl-tRNA(Gln) amidotransferase subunit C, GL tRNA synthetase 2; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}
Probab=99.44 E-value=2.8e-12 Score=103.59 Aligned_cols=126 Identities=19% Similarity=0.210 Sum_probs=82.7
Q ss_pred CCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEE
Q ss_conf 78156510110222222210246521356888999999752255543336777613689999999997226634511531
Q gi|254780285|r 306 RKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLL 385 (586)
Q Consensus 306 ~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~ 385 (586)
.|.+.+.+...+ |.||+|+||++|| ++|...+-...+..++|= |.||-....+-..+.+.||+..+.+.|+.
T Consensus 279 ~G~i~~~~~~l~---D~Vi~R~Dg~ptY---~~a~vvdD~~~~ithviR--g~d~~~~t~~~~~l~~alg~~~P~faHlP 350 (592)
T 3al0_C 279 KGYMEFDNSTLE---DFIIMKSNGFPTY---NFAVVVDDHLMRISHVFR--GEDHLSNTPKQLMIYEAFGWEAPVFMHIP 350 (592)
T ss_dssp TCSEECCSSSSC---CEEEECTTSCCCH---HHHHHHHHHHTTCSBCCE--EGGGGGGHHHHHHHHTTTTCCCCBCCEEC
T ss_pred CCEEEECCCCCC---CEEEEECCCCCCE---EEEEEECCCCCCCCEEEC--CCCCCCCHHHHHHHHHHHCCCCCCEEEEC
T ss_conf 111553644479---8189952898110---011245066578874406--52021470999999998277997116611
Q ss_pred CCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 1011012211000001223302456777776-------------321-----------1234555420001233344777
Q gi|254780285|r 386 CELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELLDFDFCK 441 (586)
Q Consensus 386 ~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~~Fd~d~ 441 (586)
. + +..||+ |||+|.|.. .+.+.-++ +|- ..+.-|+|+.=..+.-.||+++
T Consensus 351 L--I-l~~dg~--KLSKR~ga~-sV~~yre~GylPeAllNYLalLGWS~~~~EifsLdELIe~FdL~~IsKS~A~FD~~K 424 (592)
T 3al0_C 351 L--I-LGSDRT--PLSKRHGAT-SVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQK 424 (592)
T ss_dssp C--C-BCTTSS--BCCTTTCSS-BHHHHHHTTCCHHHHHHHHTTTTBCCCSCSCCCTTTTGGGCCTTSBCSSCCBCCHHH
T ss_pred C--E-ECCCCC--CCCCCCCCC-CHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHCCCCCCCCHHHH
T ss_conf 0--2-368987--555567975-278998779994899999998368986311331999998369120267752041999
Q ss_pred HHHH
Q ss_conf 6532
Q gi|254780285|r 442 VKEQ 445 (586)
Q Consensus 442 ~l~~ 445 (586)
+...
T Consensus 425 L~wi 428 (592)
T 3al0_C 425 LEWV 428 (592)
T ss_dssp HHHH
T ss_pred HHHH
T ss_conf 9999
No 21
>2o5r_A Glutamyl-tRNA synthetase 1; TM1351, EC 6.1.1.17, glutamate- tRNA ligase 1, glurs 1, structural genomics; 2.34A {Thermotoga maritima}
Probab=99.40 E-value=2.1e-11 Score=97.43 Aligned_cols=278 Identities=21% Similarity=0.237 Sum_probs=135.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH--HH----HHHHHHHHHHHHHCCCCCCCCCHHH
Q ss_conf 23443224411777778568999999998506664102014775314--55----5678987532221024500066011
Q gi|254780285|r 127 FVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ--IN----TLALSVFWRYQQALYNNDSDLPEGY 200 (586)
Q Consensus 127 ~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q--~~----~li~~~~~~~~~~~~~~~~~~~e~~ 200 (586)
=.-|.|||+||+||+|+|++-.-+||-. -|-=+.| |.|.-.. .. .+...+.|...+ .++.+..+ +.
T Consensus 17 RfAPsPtG~lHiG~~rtal~n~~~Ak~~--~G~~iLR---ieDTD~~R~~~~~~~~I~~~L~wlGl~--~De~p~~~-~~ 88 (481)
T 2o5r_A 17 RFAPSPTGFLHVGGARTALFNFLFARKE--KGKFILR---IEDTDLERSEREYEEKLMESLRWLGLL--WDEGPDVG-GD 88 (481)
T ss_dssp EECCCCCSCCBHHHHHHHHHHHHHHHHH--TCEEEEC---BCCSSCCSGGGHHHHHHHHHHHHHTCC--CSBBTTTB-CT
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCC--CCCCCCCC-CC
T ss_conf 6087989742089999999999999984--9989998---687898758879999999999976998--77687778-89
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHHHH
Q ss_conf 0241000012788888757641343-------023799999997899887545558870875210001588730104579
Q gi|254780285|r 201 YPGVYLKHVGKELADKYSSELLNFP-------EEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPSPI 273 (586)
Q Consensus 201 ~~~~y~~~~~~e~~~~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~~i 273 (586)
.+.|......+.+.++..++.+.. .++.+...+. ...+ ......++.-..+. . ..
T Consensus 89 -~~~~~QS~r~~~y~~~~~~Li~~G~aY~C~cs~eel~~~r~----~~~~------~~~~~~y~~~~~~~------~-~~ 150 (481)
T 2o5r_A 89 -HGPYRQSERVEIYREHAERLVKEGKAYYVYAYPEEIEEMRE----KLLS------EGKAPHYSQEMFEK------F-DT 150 (481)
T ss_dssp -TCCCBGGGGHHHHHHHHHHHHHTTSEEEECCCSTTTHHHHH----HHHH------TTCCCCBCGGGGTT------T-CC
T ss_pred -CCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHH----HHHC------CCCCCCCCCHHHHC------C-CC
T ss_conf -88740986899999999999876996612331777756665----5420------35687766034422------4-44
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99999999749851134267555654200024781565101102222222102465213568889999997522555433
Q gi|254780285|r 274 RDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMI 353 (586)
Q Consensus 274 ~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~i 353 (586)
..........+.........+ .......+.-.+.+.+.....+ |.||.|+||.+|| ++|...+=..-+...+
T Consensus 151 ~~~~~~~~~~~~~~~~r~~~~-~~~~~~~D~i~G~i~~~~~~~~---D~Vi~R~Dg~PtY---~fa~vvDD~~~~ithv- 222 (481)
T 2o5r_A 151 PERRREYEEKGLRPAVFFKMP-RKDYVLNDVVKGEVVFKTGAIG---DFVIMRSNGLPTY---NFACVVDDMLMEITHV- 222 (481)
T ss_dssp HHHHHHHHHTTCCCEEEECCC-SSCEEEEETTTEEEEECTTSSC---BEEEECTTSCBCH---HHHHHHHHHHTTCSEE-
T ss_pred HHHHHHHHHCCCCCEEEECCC-CCCCEEECCCCCEEECCCCCCC---CEEEEECCCCCCE---EEEEEECCCCCCCCEE-
T ss_conf 233212233166603663167-6673111021442422665679---9789914787102---2200306755685643-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH-
Q ss_conf 367776136899999999972266345115311011012211000001223302456777776-------------321-
Q gi|254780285|r 354 YVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS- 419 (586)
Q Consensus 354 yVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~- 419 (586)
|=|.|+-.-..+-..+.+.+|++.+.+.|+.. + +..||+ |||+|.|. +.+.++.++ +|-
T Consensus 223 -irg~d~~~~t~~~~~~~~~l~~~~p~~~h~~~--i-~~~dg~--KLSKR~g~-~si~~~r~~G~~p~Al~NyL~~LGws 295 (481)
T 2o5r_A 223 -IRGDDHLSNTLRQLALYEAFEKAPPVFAHVST--I-LGPDGK--KLSKRHGA-TSVEAFRDMGYLPEALVNYLALLGWS 295 (481)
T ss_dssp -EEEGGGHHHHHHHHHHHHHTTCCCCEEEEECC--E-ECTTSS--BCCGGGSC-CBHHHHHHHTCCHHHHHHHHHTSSBC
T ss_pred -ECCCCHHHHHHHHHHHHHHHCCCCCEEEECHH--H-CCCCCC--CCCCCCCC-CCHHHHHHCCCCHHHHHHHHHHHCCC
T ss_conf -15630456359999999984759983895054--4-089989--75664797-58999998799889999999994799
Q ss_pred -----------HHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf -----------12345554200012333447776532
Q gi|254780285|r 420 -----------DSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 420 -----------~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
..++.|+|+.=..+.-.||++++...
T Consensus 296 ~~~~~Ei~sl~eli~~Fdl~~iskS~A~FD~~KL~wi 332 (481)
T 2o5r_A 296 HPEGKELLTLEELISSFSLDRLSPNPAIFDPQKLKWM 332 (481)
T ss_dssp CTTCCCCCCHHHHHHHCCGGGBCSSCEECCHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHH
T ss_conf 9976367799999987171457888643669999999
No 22
>3afh_A Glutamyl-tRNA synthetase 2; protein-substrate complex, aminoacyl-tRNA synthetase, ATP-binding, ligase, nucleotide-binding; HET: GSU; 2.00A {Thermotoga maritima}
Probab=99.32 E-value=5.2e-11 Score=94.66 Aligned_cols=237 Identities=19% Similarity=0.190 Sum_probs=125.5
Q ss_pred ECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
Q ss_conf 00223443224411777778568999999998506664102014775314555678987532221024500066011024
Q gi|254780285|r 124 NIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPG 203 (586)
Q Consensus 124 vVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~ 203 (586)
|-==.-|.|||+|||||+|+|++-.-.||-. -|.=+. ..+|.+.
T Consensus 26 vr~RfaPsPtG~lHiG~~rtal~n~~~a~~~--~g~f~l---------------------------RieDtD~------- 69 (488)
T 3afh_A 26 VRVRFAPSPTGHLHVGGARTALFNWMFARKE--GGKFIL---------------------------RIEDTDT------- 69 (488)
T ss_dssp CEEEECCCCSSSCBHHHHHHHHHHHHHHHHH--TCEEEE---------------------------CBCCCCT-------
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHHHHHHC--CCEEEE---------------------------EECCCCC-------
T ss_conf 5787387989854189999999999999982--998999---------------------------8688998-------
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE---------ECHHHHHHCCHHHHH
Q ss_conf 10000127888887576413430237999999978998875455588708752100---------015887301045799
Q gi|254780285|r 204 VYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIF---------ISEDDFHRGDPSPIR 274 (586)
Q Consensus 204 ~y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~---------~~Es~~~~~~~~~i~ 274 (586)
+ ..++...+.+.++|+.||+.+|.- +..|+- .....
T Consensus 70 -----------~--------------------R~~~~~~~~i~~~L~wlgl~~De~~~~~g~~~py~QS~r----~~~y~ 114 (488)
T 3afh_A 70 -----------E--------------------RSSREYEQQILESLRWCGLDWDEGPDIGGDFGPYRQSER----LEIYR 114 (488)
T ss_dssp -----------T--------------------TCCHHHHHHHHHHHHHTTCCCSBBTTTBCTTCCCBGGGC----HHHHH
T ss_pred -----------C--------------------CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHH----HHHHH
T ss_conf -----------7--------------------588799999999999769987768677888877418548----99999
Q ss_pred HHHHHHHHCCCCCCCCCCCCC----------------------------CCCC-CCCCCCCCCEEEEHHHCCCCCCCCCC
Q ss_conf 999999974985113426755----------------------------5654-20002478156510110222222210
Q gi|254780285|r 275 DIIDNLARQGYVYEGILPPPK----------------------------SKTT-QKCDMDRKQLLFRSTMVGDDVDRPLL 325 (586)
Q Consensus 275 ~~i~~l~~~g~~~e~~~~~~~----------------------------~~~~-~~~~~~~~~~~~~~~~~g~~~d~vl~ 325 (586)
+.+++|.++|.+|.-...... ..+. ...+.-.|.+-+.+...+ |.||+
T Consensus 115 ~~~~~L~~~g~ay~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~D~i~G~~~~~~~~l~---D~vi~ 191 (488)
T 3afh_A 115 EYAEKLVEDKRAYYVVYDKEDPSKELFTTYEYPHEYKEKGHPVTIKFKVLPGKTSFEDLLKGYMEFDNSTLE---DFIIM 191 (488)
T ss_dssp HHHHHHHHTTSEEEEEECSSSTTSEEEEESSCCHHHHHTTCCEEEEECCCSSEEEEEETTTEEEEEEGGGSC---CEEEE
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEECCCCCCC---CEEEE
T ss_conf 999999865996545579999998852011078543346886202201688886435340346653776678---83899
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 24652135688899999975225554333677761368999999999722663451153110110122110000012233
Q gi|254780285|r 326 KSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 326 rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
|+||++|| .+|...+=..-+..++ |=|.||-.-..+=..+.+.||++.+.+.|+. ++ +..+|+ |+|+|.|
T Consensus 192 r~dg~pty---~~a~vvdD~~~~ithv--iRg~d~~~~t~~~~~l~~~lg~~~P~~~H~p--li-~~~~~~--klSKR~g 261 (488)
T 3afh_A 192 KSNGFPTY---NFAVVVDDHLMRISHV--FRGEDHLSNTPKQLMIYEAFGWEAPVFMHIP--LI-LGSDRT--PLSKRHG 261 (488)
T ss_dssp CTTSCBCH---HHHHHHHHHHTTCSEE--EEEGGGGGGHHHHHHHHHHHTCCCCEEEEEC--CE-ECTTSS--BCCTTTS
T ss_pred ECCCCCEE---EEEEEECCCCCCCCEE--ECCCCCCCCCHHHHHHHHHHCCCCCCEEEEC--CE-ECCCCC--CCCCCCC
T ss_conf 43898002---1224864644788678--4475454680999999998267898237722--30-079987--5453248
Q ss_pred CHHHHHHHHHH-------------HHH-----------HHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 02456777776-------------321-----------12345554200012333447776532
Q gi|254780285|r 406 DFITLRHVVDE-------------VGS-----------DSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 406 ~~v~l~dll~e-------------vg~-----------~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
.+ .+.+.-++ +|- ..++-++|+.=..+.-.||++++...
T Consensus 262 ~~-si~~yr~~GylPeAl~NyLa~LGws~~~~Ei~sleELie~FdL~~I~KS~A~FD~~KL~wl 324 (488)
T 3afh_A 262 AT-SVEHFRREGILSRALMNYLALLGWRVEGDEIFTIEEKLQSFDPKDISNKGVIFDYQKLEWV 324 (488)
T ss_dssp CC-BHHHHHHHTCCHHHHHHHHHHTTCCCSSCSCCCHHHHGGGCCGGGSCSSCEECCHHHHHHH
T ss_pred CC-CHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 86-0124865699957999999983799862046449999972683235676542038889997
No 23
>1j09_A Glutamyl-tRNA synthetase; glurs-ATP-Glu complex, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLU ATP; 1.80A {Thermus thermophilus} SCOP: a.97.1.1 c.26.1.1 PDB: 1n75_A* 1n77_A* 1n78_A* 2cuz_A* 2cv0_A* 2cv1_A* 2cv2_A* 2dxi_A* 1g59_A 1gln_A
Probab=99.27 E-value=3.3e-10 Score=89.08 Aligned_cols=273 Identities=22% Similarity=0.177 Sum_probs=139.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 0223443224411777778568999999998506664102014775314------5556789875322210245000660
Q gi|254780285|r 125 IEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPE 198 (586)
Q Consensus 125 VE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e 198 (586)
|==.-|.|||+||+||+|++++-.-+||- .-|-=+.| +.|.-.+ ...+.-.+.|...++......
T Consensus 3 vtRfaPsPtG~lHiG~~rtal~n~~~ak~--~~G~f~LR---ieDtD~~R~~~~~~~~I~~~l~wlGl~wDegp~~---- 73 (468)
T 1j09_A 3 VTRIAPSPTGDPHVGTAYIALFNYAWARR--NGGRFIVR---IEDTDRARYVPGAEERILAALKWLGLSYDEGPDV---- 73 (468)
T ss_dssp EEEECCCCSSSCBHHHHHHHHHHHHHHHH--TTCEEEEC---BCCCCTTSCCTTHHHHHHHHHHHTTCCCSBBTTT----
T ss_pred EEECCCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCC----
T ss_conf 68438898974107999999999999998--39989998---6879977478799999999999869976658677----
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHCCHH
Q ss_conf 110241000012788888757641343-------0237999999978998875455588708752100015887301045
Q gi|254780285|r 199 GYYPGVYLKHVGKELADKYSSELLNFP-------EEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDIFISEDDFHRGDPS 271 (586)
Q Consensus 199 ~~~~~~y~~~~~~e~~~~~~~~~~~~~-------e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~~~~Es~~~~~~~~ 271 (586)
+.-.+.|......+.+.++..++.+.. .++.... .+.. . ..++. ... .
T Consensus 74 ~~~~~~~~QS~r~~~y~~~~~~L~~~g~aY~c~cs~~~l~~------------~r~~--~--~~~~~---~~~------~ 128 (468)
T 1j09_A 74 GGPHGPYRQSERLPLYQKYAEELLKRGWAYRAFETPEELEQ------------IRKE--K--GGYDG---RAR------N 128 (468)
T ss_dssp BCTTCCCBGGGCHHHHHHHHHHHHHHTSEEEECCCHHHHHH------------HHHH--H--SSCCC---GGG------G
T ss_pred CCCCCCEEHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHH------------HHHH--C--CCCCC---CCC------C
T ss_conf 88988643862799999999999974996642687899998------------8752--3--78874---344------4
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 79999999997498511342675556542000247815651011022222221024652135688899999975225554
Q gi|254780285|r 272 PIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDN 351 (586)
Q Consensus 272 ~i~~~i~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~ 351 (586)
...+.......+|..+.-.+..+........+.-.+.+.++....+ |.|+.|+||++|| ++|...+=..-+...
T Consensus 129 ~~~~~~~~~~~~g~~~~iR~k~~~~~~~~~~D~i~g~~~~~~~~~~---D~vi~r~dg~p~y---~~a~~vdD~~~~ith 202 (468)
T 1j09_A 129 IPPEEAEERARRGEPHVIRLKVPRPGTTEVKDELRGVVVYDNQEIP---DVVLLKSDGYPTY---HLANVVDDHLMGVTD 202 (468)
T ss_dssp SCHHHHHHHHHTTCCCEEEECCCSSCEEEEEETTTEEEEEEGGGSC---CCEEECTTSCBCH---HHHHHHHHHHTTCCE
T ss_pred CCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCHHCCEEEECCCCCC---CEEEECCCCCCCE---EECCCCCCCCCCCCH
T ss_conf 6888888888579973899864766676456200332663455589---9699833787131---203203641037654
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HH
Q ss_conf 33367776136899999999972266345115311011012211000001223302456777776-------------32
Q gi|254780285|r 352 MIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VG 418 (586)
Q Consensus 352 ~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg 418 (586)
+ |=|.|+-....+=..+.+.+|++.+.+.|+.. + +..+|+ |+|+|.|... +.+.-++ +|
T Consensus 203 v--irg~d~~~~~~~~~~l~~~l~~~~p~~~h~pl--~-~~~~g~--klsKr~~~~~-~~~~~~~G~~p~a~~NyLa~LG 274 (468)
T 1j09_A 203 V--IRAEEWLVSTPIHVLLYRAFGWEAPRFYHMPL--L-RNPDKT--KISKRKSHTS-LDWYKAEGFLPEALRNYLCLMG 274 (468)
T ss_dssp E--EEEGGGGGGHHHHHHHHHHHTCCCCEEEEECC--C-BCTTSC--BCCTTTSCCB-HHHHHHTTCCHHHHHHHHHHHS
T ss_pred H--HHCCCCCCCCHHHHHHHHHCCCCCCCCEECCC--E-ECCCCC--CCCCCCCCCC-CHHHHHCCCCHHHHHHHHHHHC
T ss_conf 5--41134200678999999962689983101375--2-357997--0467689733-1127545998799999999936
Q ss_pred ------------HHHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf ------------112345554200012333447776532
Q gi|254780285|r 419 ------------SDSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 419 ------------~~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
...+..|+|++=..+.-.||++++...
T Consensus 275 ws~~d~~Ei~sl~eli~~Fdl~~i~ks~A~FD~~KL~~l 313 (468)
T 1j09_A 275 FSMPDGREIFTLEEFIQAFTWERVSLGGPVFDLEKLRWM 313 (468)
T ss_dssp CCCTTCCSCCCHHHHHHHCCGGGCCCSCCBCCHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH
T ss_conf 998750255667778887423026777654659999999
No 24
>1nzj_A Hypothetical protein YADB; Zn cluster, glutamyl T-RNA synthetase, structural genomics, unknown function; 1.50A {Escherichia coli} SCOP: c.26.1.1 PDB: 2zlz_A*
Probab=99.25 E-value=9e-11 Score=92.98 Aligned_cols=200 Identities=19% Similarity=0.185 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCC
Q ss_conf 02234432244117777785689999999985066641020147753145556789875322210245000660110241
Q gi|254780285|r 125 IEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALYNNDSDLPEGYYPGV 204 (586)
Q Consensus 125 VE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~~~~~~~~~~~~~~~~~e~~~~~~ 204 (586)
|==.-|+|+|+||+||+|++++..-.||- +-|.=+.| .+|.+. +..
T Consensus 7 ~tRfAPsPtG~lHlG~artal~n~l~Ar~--~~G~~iLR---------------------------ieDtD~-~R~---- 52 (298)
T 1nzj_A 7 IGRFAPSPSGELHFGSLIAALGSYLQARA--RQGRWLVR---------------------------IEDIDP-PRE---- 52 (298)
T ss_dssp EEEECCCTTSCCCHHHHHHHHHHHHHHHH--TTCEEEEE---------------------------ECCSCG-GGS----
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHHH--CCCEEEEE---------------------------ECCCCC-CCC----
T ss_conf 68679598985208999999999999998--09989998---------------------------687997-758----
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC-EECHHHHHHCCHHHHHHHHHHHHHC
Q ss_conf 000012788888757641343023799999997899887545558870875210-0015887301045799999999974
Q gi|254780285|r 205 YLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHDI-FISEDDFHRGDPSPIRDIIDNLARQ 283 (586)
Q Consensus 205 y~~~~~~e~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~l~~l~i~fD~-~~~Es~~~~~~~~~i~~~i~~l~~~ 283 (586)
+....+.+.++|+.||+.+|. ....|+. .....+++++|.++
T Consensus 53 ---------------------------------~~~~~~~I~~dL~wLgl~~d~~~~~QS~r----~~~y~~~~~~L~~~ 95 (298)
T 1nzj_A 53 ---------------------------------VPGAAETILRQLEHYGLHWDGDVLWQSQR----HDAYREALAWLHEQ 95 (298)
T ss_dssp ---------------------------------CTTHHHHHHHHHHHTTCCCSSCCEEGGGC----HHHHHHHHHHHHHT
T ss_pred ---------------------------------CHHHHHHHHHHHHHCCCCCCCCCCCHHHH----HHHHHHHHHHHHHC
T ss_conf ---------------------------------76899999999874466677643326768----99999999999977
Q ss_pred CCCCCCCCCCC---------CC----------CCCCCCCCC----------CCCEEEEHHHCCCCCCCCCCCCCCCHHHH
Q ss_conf 98511342675---------55----------654200024----------78156510110222222210246521356
Q gi|254780285|r 284 GYVYEGILPPP---------KS----------KTTQKCDMD----------RKQLLFRSTMVGDDVDRPLLKSDGSYTYF 334 (586)
Q Consensus 284 g~~~e~~~~~~---------~~----------~~~~~~~~~----------~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~ 334 (586)
|++|.-..... .. ......... .+...+.... ...|.|+.|+||.++|
T Consensus 96 G~aY~C~csr~~l~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~r~Dg~ptY- 172 (298)
T 1nzj_A 96 GLSYYCTCTRARIQSIGGIYDGHCRVLHHGPDNAAVRIRQQHPVTQFTDQLRGIIHADEKL--AREDFIIHRRDGLFAY- 172 (298)
T ss_dssp TCEEEECCCHHHHHHTTSSCCCTTTTTCCCSTTCEEEECCSSCCCEEEETTTEEEECCHHH--HHSCCEEECTTSCBCH-
T ss_pred CCEEEECCCHHHHHHHCCCCCCCCCCCCCCCCCHHHEEECCCCCEEEEECCCCCEEECCCC--CCCCEEEECCCCCCCE-
T ss_conf 9822502558888763023333332233455322210205786216744221636631333--4464124657786311-
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH
Q ss_conf 8889999997522555433367776136899999999972266345115311011012211000001223302
Q gi|254780285|r 335 AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF 407 (586)
Q Consensus 335 t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~ 407 (586)
++|...+=..-+...+| -|.|+-....+=..+.+.||++.+.+.|+.. + +..+|+ |||+|.|..
T Consensus 173 --~lA~vVDD~~~gIThVi--RG~Dl~~st~~Q~~L~~aLg~~~P~y~H~pl--i-~~~~G~--KLSKr~~a~ 236 (298)
T 1nzj_A 173 --NLAVVVDDHFQGVTEIV--RGADLIEPTVRQISLYQLFGWKVPDYIHLPL--A-LNPQGA--KLSKQNHAP 236 (298)
T ss_dssp --HHHHHHHHHHTTCCEEE--EEGGGHHHHHHHHHHHHHHTCCCCEEEEECB--C-CC---------------
T ss_pred --EECHHCCCCCCCCCEEE--ECCCCCCCCHHHHHHHHHHCCCCCCEEEEEE--E-ECCCCC--CCCCCCCHH
T ss_conf --22201154326997896--4886665768899999973899985498672--5-778998--567768711
No 25
>2ja2_A Glutamyl-tRNA synthetase; non-discriminating glutamyl-tRNA aminoacylation, protein biosynthesis, aminoacyl-tRNA synthetase, ligase; 1.65A {Mycobacterium tuberculosis}
Probab=99.12 E-value=6.9e-09 Score=79.79 Aligned_cols=276 Identities=22% Similarity=0.159 Sum_probs=127.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHH------HHHHHHHHHHHHHHHCCCCCCCCCHHHCC
Q ss_conf 443224411777778568999999998506664102014775314------55567898753222102450006601102
Q gi|254780285|r 129 SANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQ------INTLALSVFWRYQQALYNNDSDLPEGYYP 202 (586)
Q Consensus 129 SpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q------~~~li~~~~~~~~~~~~~~~~~~~e~~~~ 202 (586)
-|+|||+||+||+|+|++..-+||- .-|-=+.| +.|.-.. ...+...+.|...++ ++.+.. .+. .
T Consensus 12 APsPtG~lHiG~~rtal~n~~~Ak~--~~g~fiLR---ieDtD~~R~~~~~~~~I~~~l~wlgl~~--De~~~~-~g~-~ 82 (498)
T 2ja2_A 12 CPSPTGTPHVGLVRTALFNWAYARH--TGGTFVFR---IEDTDAQRDSEESYLALLDALRWLGLDW--DEGPEV-GGP-Y 82 (498)
T ss_dssp CCCSSSSCBHHHHHHHHHHHHHHHH--HTCEEEEC---BCCCCTTTCCHHHHHHHHHHHHHHTCCC--SBBTTT-BCT-T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHH--CCCEEEEE---ECCCCCCCCCHHHHHHHHHHHHHCCCCC--CCCCCC-CCC-C
T ss_conf 8798973128999999999999998--29989998---7889987488899999999999869987--768676-888-8
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHHHHHHHHHHH-HHCCCCCCCEECHHHHHHCCHHHHHHHH
Q ss_conf 4100001278888875764134302----3799999997899887545558-8708752100015887301045799999
Q gi|254780285|r 203 GVYLKHVGKELADKYSSELLNFPEE----KWLPIVKDYSVQAMMKIIRDDL-KALNIQHDIFISEDDFHRGDPSPIRDII 277 (586)
Q Consensus 203 ~~y~~~~~~e~~~~~~~~~~~~~e~----~~~~~~~~~~~~~~~~~~~~~l-~~l~i~fD~~~~Es~~~~~~~~~i~~~i 277 (586)
+.|......+.+.++..++.+..-. -..+.+.. .+... ..-...+|. .+ .....+..
T Consensus 83 ~~~~QS~r~~~Y~~~~~~L~~~g~aY~C~cs~e~l~~---------~~~~~~~~~~~~y~~---~~------~~~~~~~~ 144 (498)
T 2ja2_A 83 GPYRQSQRAEIYRDVLARLLAAGEAYHAFSTPEEVEA---------RHVAAGRNPKLGYDN---FD------RHLTDAQR 144 (498)
T ss_dssp CCCBGGGCHHHHHHHHHHHHHTTSEEEECCCHHHHHH---------HHHHTTCCTTSCCCC---GG------GGCCHHHH
T ss_pred CCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH---------HHHHCCCCCCCCCCH---HH------CCCCHHHH
T ss_conf 7730975999999999999877997343687788887---------542104688777740---10------13444667
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 99997498511342675556542000247815651011022222221024652135688899999975225554333677
Q gi|254780285|r 278 DNLARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMG 357 (586)
Q Consensus 278 ~~l~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~ 357 (586)
......|..+.-.+..+.. ....-+.-.+.+.+.....+ |.|+.|+||.+|| ++|...+=...+.+.+| -|
T Consensus 145 ~~~~~~g~~~viR~k~~~~-~~~~~D~v~g~~~~~~~~~~---D~vi~r~dg~PtY---~~a~vvDD~~~~ithvi--Rg 215 (498)
T 2ja2_A 145 AAYLAEGRQPVVRLRMPDD-DLAWNDLVRGPVTFAAGSVP---DFALTRASGDPLY---TLVNPCDDALMKITHVL--RG 215 (498)
T ss_dssp HHHHHTTCCCEEEECCCSS-CEEEEETTTEEEEECTTCSC---CCBSBCTTSCBCH---HHHHHHHHHHTTCCEEE--EE
T ss_pred HHHHHCCCCEEEEEECCCC-CCCCCCCCCCEEEEECCCCC---CCEEECCCCCCCE---EECEECCCCCCCCCEEC--CC
T ss_conf 8776469980699845998-85113430420797046689---8444020585331---41545134467875550--78
Q ss_pred CCHHH-HHHH--HHHHHHHH--CCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH
Q ss_conf 76136-8999--99999972--266345115311011012211000001223302456777776-------------321
Q gi|254780285|r 358 SDHSG-YVKR--LEAVAAAV--SEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS 419 (586)
Q Consensus 358 ~~Q~~-h~~~--v~~~~~~l--g~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~ 419 (586)
.||-. -.+| ++.++... |++.+.+.|+.. + +..+|+ |||+|.|.. ++.++-++ +|-
T Consensus 216 ~d~~~~t~~q~~l~~~l~~~~~~~~~p~~~h~~l--~-~~~~g~--klskr~~~~-~~~~~r~~GylPeAl~NyLa~LGw 289 (498)
T 2ja2_A 216 EDLLPSTPRQLALHQALIRIGVAERIPKFAHLPT--V-LGEGTK--KLSKRDPQS-NLFAHRDRGFIPEGLLNYLALLGW 289 (498)
T ss_dssp GGGGGGHHHHHHHHHHHHHTTSCCCCCEEEEECC--E-ECSSSS--BCCTTSGGG-BHHHHHHHTCCHHHHHHHHHTSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCCCEEEECHH--H-HCCCCC--CCCCCCCCH-HHHHHHHCCCCHHHHHHHHHHHCC
T ss_conf 7657741689999999985166888844875323--3-054566--254569851-399999869988999999999679
Q ss_pred ------------HHHHHHHHHHCCHHHHHHHHHHHHHHC
Q ss_conf ------------123455542000123334477765320
Q gi|254780285|r 420 ------------DSVRFMMLWRKNSELLDFDFCKVKEQS 446 (586)
Q Consensus 420 ------------~aiky~~L~~~~~~~~~Fd~d~~l~~~ 446 (586)
..+.-|+|+.=..+.-.||++++..++
T Consensus 290 s~~~~~Ei~sl~eli~~F~l~~i~ks~a~FD~~KL~wlN 328 (498)
T 2ja2_A 290 SIADDHDLFGLDEMVAAFDVADVNSSPARFDQKKADALN 328 (498)
T ss_dssp CSCSSCCCCCHHHHHHHCCGGGCCCSCEECCHHHHHHHH
T ss_pred CCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 888875000002034530534477777300288889999
No 26
>3aii_A Glutamyl-tRNA synthetase; amino-acyl tRNA synthetase, ligase; 1.65A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.01 E-value=1.7e-08 Score=76.99 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=45.1
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCC
Q ss_conf 22210246521356888999999752255543336777613689999999997226634511531101101221100000
Q gi|254780285|r 321 DRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKM 400 (586)
Q Consensus 321 d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~km 400 (586)
|+++.|+||.+|| ++|...+=...+...+ |=|.|+-....+=..+.+.||+..+.+.|+ +.+++ ++. +|
T Consensus 262 d~v~~r~d~~PtY---~fA~vVDD~~~gITHV--IRG~D~l~sT~~Q~~L~~aLg~~~P~~~H~--~~L~~--~~~--~l 330 (553)
T 3aii_A 262 PRTGTRYRVYPMM---NFSVAVDDHLLGVTHV--LRGKDHLANREKQEYLYRHLGWEPPEFIHY--GRLKM--DDV--AL 330 (553)
T ss_dssp TTTBTSCCEEECH---HHHHHHHHHHTTCCEE--EC-----CHHHHHHHHHHHHTCCCCEEECC--CCBC----------
T ss_pred CCCCCCCCCCEEE---EEEEEECCCCCCCCEE--EECCHHHCCCHHHHHHHHHCCCCCCCEEEE--EEECC--CCC--CC
T ss_conf 6403330464356---5512643555424669--855321027589999999759998751122--13337--775--44
Q ss_pred CCCCCCHH
Q ss_conf 12233024
Q gi|254780285|r 401 SKRAGDFI 408 (586)
Q Consensus 401 stR~G~~v 408 (586)
|+|++...
T Consensus 331 Skr~~~~~ 338 (553)
T 3aii_A 331 STSGAREG 338 (553)
T ss_dssp -CHHHHHH
T ss_pred CCCCCCCC
T ss_conf 52332113
No 27
>2cfo_A Glutamyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase, ATP-binding, nucleotide- binding, protein biosynthesis; HET: GLU; 2.45A {Synechococcus elongatus}
Probab=98.93 E-value=1.4e-08 Score=77.63 Aligned_cols=152 Identities=18% Similarity=0.198 Sum_probs=81.0
Q ss_pred HHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEHHHCCCCCCCCCC-----CCCCCHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 974985113426755565420002478156510110222222210-----246521356888999999752255543336
Q gi|254780285|r 281 ARQGYVYEGILPPPKSKTTQKCDMDRKQLLFRSTMVGDDVDRPLL-----KSDGSYTYFAADLAYFKCKYERGFDNMIYV 355 (586)
Q Consensus 281 ~~~g~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~vl~-----rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyV 355 (586)
..+|..+--.+..+........+.-.+.+.+......+ |.++. |+||++|| ++|...+=..-+...+ |
T Consensus 136 ~~~g~~~~~R~k~~~~~~~~~~D~v~g~~~~~~~~~~~--d~ii~~~~~~~~dg~ptY---~~a~~vDD~~~~ithv--i 208 (492)
T 2cfo_A 136 EAAGRTPVIRFKIEDDRQIEWQDLVRGRVSWQGADLGG--DMVIARAAPRGEIGYPLY---NLVVVVDDIAMGITDV--I 208 (492)
T ss_dssp HHTTCCCEEEECCCTTCEEEEEETTTEEEEEEGGGGCS--SEEEECSCCTTSCCCBCH---HHHHHHHHHHTTCSEE--E
T ss_pred HHCCCCEEEEEECCCCCCEEEECCEEEEEEEECCCCCC--CEEEEECCCCCCCCCCHH---HHHHHHCCCCCCCCEE--E
T ss_conf 65599806999737888535653300057641002579--734640457677775327---7544406755676778--7
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHH-------------HHH---
Q ss_conf 7776136899999999972266345115311011012211000001223302456777776-------------321---
Q gi|254780285|r 356 MGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDE-------------VGS--- 419 (586)
Q Consensus 356 v~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~e-------------vg~--- 419 (586)
=|.|+-.....=..+.+.+|++.+.+.|+.. + +..+|+ |||+|.|. .++.++-++ +|-
T Consensus 209 Rg~d~~~~t~~~~~~~~~l~~~~p~~~h~pl--l-~~~~g~--klSKr~~~-~~v~~~r~~G~~peAl~NyLa~LGws~~ 282 (492)
T 2cfo_A 209 RGEDHIGNTPKQILLYEALGATPPNFAHTPL--I-LNSTGQ--KLSKRDGV-TSISDFRAMGYLAPALANYMTLLGWSPP 282 (492)
T ss_dssp EEGGGTTHHHHHHHHHHHTTCCCCEEEEECC--E-ECSSSS--BCCTTSSC-CBHHHHHHTTCCHHHHHHHHHHTTBCCC
T ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCEEEHHH--H-CCCCCC--CCCCCCCC-CCHHHHHHCCCCCHHHHHHHHHHCCCCC
T ss_conf 3520125534999998752579983653746--3-166787--32323897-5477787679980899999999489998
Q ss_pred ----------HHHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf ----------12345554200012333447776532
Q gi|254780285|r 420 ----------DSVRFMMLWRKNSELLDFDFCKVKEQ 445 (586)
Q Consensus 420 ----------~aiky~~L~~~~~~~~~Fd~d~~l~~ 445 (586)
..++.|+++.-..+.-.||++++...
T Consensus 283 ~~~~Eifsleeli~~Fdl~~i~ks~A~FD~~KL~~i 318 (492)
T 2cfo_A 283 EGVGELFTLDLAAKHFSFERINKAGARFDWDKLNWL 318 (492)
T ss_dssp TTTCSCCCHHHHHHHCCSTTBCSSCEECCHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHH
T ss_conf 886512558999999998504655443589999999
No 28
>1qtq_A GLNRS, protein (glutaminyl-tRNA synthetase); glutamine, trnaGln, E. coli, complex, ligase/RNA complex; HET: QSI; 2.25A {Escherichia coli} SCOP: b.53.1.2 c.26.1.1 PDB: 1gsg_P* 1gts_A* 1gtr_A* 1zjw_A* 1o0b_A* 1o0c_A* 1qru_A* 1qrs_A* 1qrt_A* 1euy_A* 1euq_A* 1exd_A* 2rd2_A* 2re8_A* 1nyl_A
Probab=98.75 E-value=2.5e-07 Score=68.80 Aligned_cols=77 Identities=13% Similarity=-0.008 Sum_probs=44.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCC
Q ss_conf 22210246521356888999999752255543336777613689999999997226634511531101101221100000
Q gi|254780285|r 321 DRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKM 400 (586)
Q Consensus 321 d~vl~rsDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~km 400 (586)
|+++.|+||.+|| |+|....=...+...+| =|.|+.....+-..+.+.+|++.+...|++. . +..+|. +|
T Consensus 199 d~v~~k~dg~PtY---~fA~vVDD~l~gITHVi--RG~D~l~st~~q~~l~~aLg~~~p~~~h~~l-~--l~~~~~--~l 268 (553)
T 1qtq_A 199 HQTGNKWCIYPMY---DFTHCISDALEGITHSL--CTLEFQDNRRLYDWVLDNITIPVHPRQYEFS-R--LNLEYT--VM 268 (553)
T ss_dssp TTTBTSCSEEECH---HHHHHHHHHHTTCSEEE--EEGGGTTTHHHHHHHHHTSCCSCCCEEEEEC-C--CCBTTS--CC
T ss_pred CCEEECCCCCCCC---CHHCHHHHHHCCCCEEE--EEEECCCCCHHHHHHHHHCCCCCCCEEEEEE-E--ECCCCC--CC
T ss_conf 5254335454000---00021557764797898--5100334667999999724788885377665-7--535554--32
Q ss_pred CCCCCCH
Q ss_conf 1223302
Q gi|254780285|r 401 SKRAGDF 407 (586)
Q Consensus 401 stR~G~~ 407 (586)
|+|....
T Consensus 269 skrhl~~ 275 (553)
T 1qtq_A 269 SKRKLNL 275 (553)
T ss_dssp CHHHHHH
T ss_pred CCCCCCC
T ss_conf 0022420
No 29
>2hz7_A Glutaminyl-tRNA synthetase; rossmann fold, GLNRS core, class I aminoacyl-tRNA synthetase, ligase; 2.30A {Deinococcus radiodurans}
Probab=98.71 E-value=5e-07 Score=66.71 Aligned_cols=49 Identities=20% Similarity=0.357 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHCCHHCCCCCCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 89999999998562213887656554100022344322441177777856899999999
Q gi|254780285|r 96 SYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLM 154 (586)
Q Consensus 96 ~~~~~~l~~i~~~~~~yG~~~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril 154 (586)
.|+.+++..=+..+ +-.+|+. =.-|+|+|+|||||+|++++-.-+||-+
T Consensus 49 ~fi~~~i~~dl~~~---------~~~kVvT-RFaPsPtG~LHIGhartal~N~~~Ak~~ 97 (851)
T 2hz7_A 49 NFITEIIERDLEAG---------KYPRVVT-RFPPDPSGYAHLGHVFASLLDFNTARQY 97 (851)
T ss_dssp CHHHHHHHHHHHTT---------SCSSCEE-EECCCSSSCCBHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHC---------CCCEEEE-EECCCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 68999999898539---------9980899-5088988621389999999999999985
No 30
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=98.59 E-value=1.3e-07 Score=70.87 Aligned_cols=126 Identities=16% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0000122330245677777632112345554200-012333447776532024436788888888999987533200246
Q gi|254780285|r 397 PIKMSKRAGDFITLRHVVDEVGSDSVRFMMLWRK-NSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDL 475 (586)
Q Consensus 397 ~~kmstR~G~~v~l~dll~evg~~aiky~~L~~~-~~~~~~Fd~d~~l~~~~~nt~~YiqYa~aR~~SIlrKa~~~~~~~ 475 (586)
..|||+.+||++..++++++-|.+++|+++++.. +..+..|+.+.+.. ..-+++..+-.+...+....+...
T Consensus 635 g~kMSKS~gN~v~p~~~i~~yGaD~~R~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~-- 707 (878)
T 2v0c_A 635 PAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQG-----AWRFLNRIYRRVAEDREALLETSG-- 707 (878)
T ss_dssp EEECSGGGTCCCBHHHHHHHSCHHHHHHHHHHHSCTTSCEEECHHHHHH-----HHHHHHHHHHHHHHHHHHHHTCCC--
T ss_pred HHHCCEECCCCCCCCEEHHHCCHHHHHHHHHCCCCCHHCHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHCCCCC--
T ss_conf 3104240257888400022013157776543158840000015888999-----999999999999998763204556--
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 832234223552114998999999998421899999998528127999999999988999870
Q gi|254780285|r 476 DFDLFPRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSH 538 (586)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~E~~L~~~l~~f~~vi~~a~~~~~P~~l~~Yl~~La~~Fn~fY~~ 538 (586)
.......+..++.++..|..+-.-+.++.+++.-+..+.-++++...+..++..
T Consensus 708 ---------~~~~~~~~~~D~wils~l~~~i~~v~~~~~~~~f~~a~~~l~~f~n~~~~~~k~ 761 (878)
T 2v0c_A 708 ---------VFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKD 761 (878)
T ss_dssp ---------CCCGGGCCHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------CCCCHHCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHC
T ss_conf ---------788001898899999999999999999998789889999999999999998755
No 31
>2v0c_A Aminoacyl-tRNA synthetase; ligase, nucleotide-binding, protein biosynthesis; HET: LMS ANZ; 1.85A {Thermus thermophilus} PDB: 1h3n_A* 1obc_A* 1obh_A* 2bte_A* 2byt_A 2v0g_A*
Probab=97.86 E-value=0.0005 Score=45.65 Aligned_cols=57 Identities=26% Similarity=0.419 Sum_probs=47.3
Q ss_pred CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHH
Q ss_conf 410002234432244117777785689999999985066641020147753145556
Q gi|254780285|r 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTL 177 (586)
Q Consensus 121 ~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~l 177 (586)
++-.+-..=|+++|.|||||++|-+|.|.++|-.+-.|++|...-=.+-.|+.+-..
T Consensus 33 ~kf~~~~~pPy~nG~lHiGHal~~tikDii~Rykrm~G~~V~~~~GwD~~GlPiE~~ 89 (878)
T 2v0c_A 33 GKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENA 89 (878)
T ss_dssp -EEEEEECCCCCSSCCBHHHHHHHHHHHHHHHHHHHHTCEEECCCCBCCSSHHHHHH
T ss_pred CCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHH
T ss_conf 983896189998886002156888999999999873899789988436674999999
No 32
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYB; 2.0A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=96.75 E-value=0.012 Score=36.02 Aligned_cols=76 Identities=20% Similarity=0.116 Sum_probs=49.7
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 521356---88899999975225554333677761368999999999722663451153110110122110000012233
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
+.++|. +-|+-+. +. .+=+.|+||.+|+..-..+++.+++..+. ++...++....+|+ |||+..|
T Consensus 171 ~ef~YpllQa~D~~~l------~~--~~~~gG~DQ~~~i~~~rd~~~r~~~~~~~--~~~~p~l~~~~g~~--KmskS~~ 238 (432)
T 1h3f_A 171 HELLYPFAQAYDSVAI------RA--DVEMGGTDQRFNLLVGREVQRAYGQSPQV--CFLMPLLVGLDGRE--KMSKSLD 238 (432)
T ss_dssp GGGTHHHHHHHHHHHH------TC--SEEEEEGGGHHHHHHHHHHHHHTTCCCCE--EEEECCCBCTTSSS--BCCGGGT
T ss_pred CCCCCHHHHHHHHHHH------CC--CCCCCCHHHHHHHHHHHHHHHHCCCCCCE--EEECCCCCCCCCCC--CCCCCCC
T ss_conf 2124425666567776------06--77667373799999888988861887736--99737540378767--6668999
Q ss_pred CHHHHHHHHHH
Q ss_conf 02456777776
Q gi|254780285|r 406 DFITLRHVVDE 416 (586)
Q Consensus 406 ~~v~l~dll~e 416 (586)
+.|.+++--.+
T Consensus 239 ~~i~l~~~p~~ 249 (432)
T 1h3f_A 239 NYIGLTEPPEA 249 (432)
T ss_dssp CCCBTTSCHHH
T ss_pred CCCCCCCCHHH
T ss_conf 97132678388
No 33
>2cya_A Tyrosyl-tRNA synthetase; tyrrs, aminoacylation, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.20A {Aeropyrum pernix}
Probab=95.98 E-value=0.085 Score=30.02 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=49.9
Q ss_pred CCCCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCC--------
Q ss_conf 465213568---889999997522555433367776136899999999972266345115311011012211--------
Q gi|254780285|r 327 SDGSYTYFA---ADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDG-------- 395 (586)
Q Consensus 327 sDGt~~Y~t---~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg-------- 395 (586)
+=|..+|-. -|+-+. ++| +-.+|.||.+|+.--..+++.+|+.+... ++.-++.-..++
T Consensus 159 ~~g~~~YP~LQaaDil~~------~ad--~vpvG~DQ~~hl~l~Rdia~k~n~~~~~~--l~~p~~~~l~g~~~~~~s~~ 228 (364)
T 2cya_A 159 DASKLIYPLMQVSDIFYM------DLD--IALGGMDQRKAHMLARDVAEKLGRKKPVA--IHTPIISSLQGPGRMEASQG 228 (364)
T ss_dssp CTHHHHHHHHHHHHHHHT------TCS--EEEEEGGGHHHHHHHHHHHTTTTCCCCEE--EEECCCBCSSCC--------
T ss_pred CCCEEECCCCHHHHHHHH------HHC--CCCCCHHHHHHHHHHHHHHHHHCCCCCEE--EECCCCCCCCCCCCCCCCCC
T ss_conf 664220243115667766------430--23566678899999999999837988702--21576556776430233434
Q ss_pred ------CCCCCCCCCCC-HHHHHHHHHHH
Q ss_conf ------00000122330-24567777763
Q gi|254780285|r 396 ------MPIKMSKRAGD-FITLRHVVDEV 417 (586)
Q Consensus 396 ------~~~kmstR~G~-~v~l~dll~ev 417 (586)
...|||+..++ .|.+.|--++|
T Consensus 229 ~~~~~~~~~KMSkS~~~s~I~l~D~~e~I 257 (364)
T 2cya_A 229 EIDDVLAEVKMSKSKPETAVFVVDSDDDI 257 (364)
T ss_dssp --------CBCCSSSGGGSCBTTCCHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEEECCCHHHH
T ss_conf 55567777666678976623523898999
No 34
>1n3l_A Tyrosyl-tRNA synthetase; rossmann fold AS catalytic domain, unique anticodon recognition domain, dimer, ligase; 1.18A {Homo sapiens} SCOP: c.26.1.1 PDB: 1q11_A*
Probab=95.56 E-value=0.092 Score=29.79 Aligned_cols=62 Identities=23% Similarity=0.120 Sum_probs=41.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCC-CCCCCCHHHHHHHHHHH
Q ss_conf 43336777613689999999997226634511531101101221100000-12233024567777763
Q gi|254780285|r 351 NMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKM-SKRAGDFITLRHVVDEV 417 (586)
Q Consensus 351 ~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~km-stR~G~~v~l~dll~ev 417 (586)
--+-++|+||.+|+.-...+++.++...+. ++..-++.. .+|. || |+..|+.|.+.|--++|
T Consensus 179 a~iv~~G~DQ~~~i~l~rdla~k~~~~~~~--~l~~pll~~-l~G~--k~s~s~~~s~I~l~D~~~~i 241 (372)
T 1n3l_A 179 VDAQFGGIDQRKIFTFAEKYLPALGYSKRV--HLMNPMVPG-LTGS--KMSSSEEESKIDLLDRKEDV 241 (372)
T ss_dssp CSEEEEEGGGHHHHHHHHHHGGGGTCCCCE--EEEECCCCC-SSCC---------CCSCBTTCCHHHH
T ss_pred CCEEEECHHHHHHHHHHHHHHHHHCCCCCE--EEECCCCCC-HHHH--CCCCCCCCCEEECCCCHHHH
T ss_conf 777884247889999999999981899874--882276553-1222--01369988876523899999
No 35
>2cyc_A Tyrosyl-tRNA synthetase; tyrosine, tyrrs, aminoacylation, structural genomics, NPPSFA; HET: TYR; 2.20A {Pyrococcus horikoshii OT3}
Probab=93.77 E-value=0.33 Score=25.91 Aligned_cols=85 Identities=16% Similarity=0.067 Sum_probs=48.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC-------CEEEECCHH-HCCC-----
Q ss_conf 465213568889999997522555433367776136899999999972266345-------115311011-0122-----
Q gi|254780285|r 327 SDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ-------INVLLCELV-RLYR----- 393 (586)
Q Consensus 327 sDGt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~-------~~~~~~~~v-~l~~----- 393 (586)
+=|..+|...-.|-+.. ++-.+-.+|.||..|+.....++..+++.... ....+..++ .|..
T Consensus 162 ~~g~~~YP~lQaaDil~-----~~~~~vpvG~DQ~~~~~l~rdia~k~n~~~~~~~~~~~~~~~~~~~~l~gL~~~~~~~ 236 (375)
T 2cyc_A 162 DFAKLIYPMMQVADIFY-----QGVTIAHAGMDQRKAHVIAIEVAQKLRYHPIVHEGEKLKPVAVHHHLLLGLQEPPKWP 236 (375)
T ss_dssp BTHHHHHHHHHHHHHHH-----TTCSEEEEEGGGHHHHHHHHHHGGGCSSSCEEETTEEECCEEEEECCCBCSSCCSSSS
T ss_pred CCCEECCCHHHHHHHHH-----HHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCC
T ss_conf 40100131265667988-----6302255552025899999999998388766555665531221144555766643233
Q ss_pred ----------CCCCCCCCCCCC-CHHHHHHHHHHH
Q ss_conf ----------110000012233-024567777763
Q gi|254780285|r 394 ----------DGMPIKMSKRAG-DFITLRHVVDEV 417 (586)
Q Consensus 394 ----------dg~~~kmstR~G-~~v~l~dll~ev 417 (586)
+| ..|||+-.+ +.|.+.|--++|
T Consensus 237 ~~~~~~~~~~~~-~~KMSkS~~~s~I~L~Dtpe~I 270 (375)
T 2cyc_A 237 IESEEEFKEIKA-QMKMSKSKPYSAVFIHDSPEEI 270 (375)
T ss_dssp CCSHHHHHHHHH-HHBGGGSCGGGSCBTTCCHHHH
T ss_pred CCCCCCCCCCCC-CCCCCCCCCCCEEEECCCHHHH
T ss_conf 322223456667-7767668988867611899999
No 36
>1r6u_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytic domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.00A {Homo sapiens} SCOP: c.26.1.1 PDB: 1ulh_A 2dr2_A* 2ake_A* 1o5t_A
Probab=89.40 E-value=0.96 Score=22.65 Aligned_cols=65 Identities=15% Similarity=0.188 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 4333677761368999999999722663451153110110122110000012-2330245677777632
Q gi|254780285|r 351 NMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSK-RAGDFITLRHVVDEVG 418 (586)
Q Consensus 351 ~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmst-R~G~~v~l~dll~evg 418 (586)
.++=.+|.||..|+.....++..+|+.++...+ ..++....++ ..|||+ ..++.|.|.|--++|.
T Consensus 257 ~~lVPvG~DQ~~hi~ltRdia~r~~~~~p~~i~--~~~lp~L~G~-~~KMSsS~~~saI~L~D~p~~I~ 322 (437)
T 1r6u_A 257 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLH--STFFPALQGA-QTKMSASDPNSSIFLTDTAKQIK 322 (437)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEE--ECCCEETTEE-EEECCTTSSSSCCBTTCCHHHHH
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCCEEEC--CCCCCCCCCC-CCCCCCCCCCCCCCCCCCHHHHH
T ss_conf 246233356899999999999983678863321--4455567876-67677789866010579999999
No 37
>1r6t_A Tryptophanyl-tRNA synthetase; class IC tRNA synthetase, rossmann fold catalytical domain, anticodon recognition domain, bound Trp-AMP, ligase; HET: TYM; 2.10A {Homo sapiens} SCOP: a.16.1.3 c.26.1.1 PDB: 2azx_A* 2quh_A* 2qui_A* 2quj_A* 2quk_A
Probab=89.09 E-value=1 Score=22.50 Aligned_cols=65 Identities=15% Similarity=0.173 Sum_probs=43.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 433367776136899999999972266345115311011012211000001-22330245677777632
Q gi|254780285|r 351 NMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMS-KRAGDFITLRHVVDEVG 418 (586)
Q Consensus 351 ~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kms-tR~G~~v~l~dll~evg 418 (586)
.++=.+|.||..|+.--..++..+|+.++...+. .++....+ ...||| +..++.|.|.|--++|-
T Consensus 304 ~~LVPvG~DQ~~hi~ltRDiA~R~~~~kP~~l~~--~~lpgL~G-~~~KMSsS~~~saI~L~Dspe~Ik 369 (477)
T 1r6t_A 304 QCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLHS--TFFPALQG-AQTKMSASDPNSSIFLTDTAKQIK 369 (477)
T ss_dssp EEEEEEEGGGHHHHHHHHHHGGGGTCCCCEEEEE--CCCEETTE-EEEECCTTSTTCCCBTTCCHHHHH
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCCCEECC--CCCCCCCC-CCCCCCCCCCCCEEECCCCHHHHH
T ss_conf 3340330308999999999999835688600014--55556789-777736789877544369999999
No 38
>2dlc_X Tyrosyl-tRNA synthetase, cytoplasmic; tyrrs, ligase/tRNA complex; HET: 2MG OMG M2G PSU 6IA 5MC 5MU 1MA YMP; 2.40A {Saccharomyces cerevisiae}
Probab=88.07 E-value=0.16 Score=28.04 Aligned_cols=77 Identities=22% Similarity=0.182 Sum_probs=50.5
Q ss_pred CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 5213568---8899999975225554333677761368999999999722663451153110110122110000012233
Q gi|254780285|r 329 GSYTYFA---ADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 329 Gt~~Y~t---~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
|..+|-. .|+-+. ++| +-++|.||..|+.-...++..+|+.+.. +++.-++....+|+ |||+..+
T Consensus 166 ~~~~YP~lQaaDil~~------~ad--~v~~G~DQ~~~~~l~Rd~a~~~~~~~~~--~l~~p~l~gL~g~~--KMSkS~~ 233 (394)
T 2dlc_X 166 SGLIYPLMQALDEQFL------DVD--CQFGGVDQRKIFVLAEENLPSLGYKKRA--HLMNPMVPGLAQGG--KMSASDP 233 (394)
T ss_dssp HHHHHHHHHHHHHHHT------TCS--EEEEEGGGHHHHHHHHHHGGGGTCCCCE--EEEECCCCCCC------------
T ss_pred HHHHHHHHHHHHHHHC------CCC--EEEEECCHHHHHHHHHHHHHHHCCCCCE--EEECCCEECCCCCC--CCCCCCC
T ss_conf 8886457764123433------687--8724211588999999999972789965--99616403799887--7788899
Q ss_pred C-HHHHHHHHHHH
Q ss_conf 0-24567777763
Q gi|254780285|r 406 D-FITLRHVVDEV 417 (586)
Q Consensus 406 ~-~v~l~dll~ev 417 (586)
+ .|.+.|--++|
T Consensus 234 ns~I~l~D~p~~i 246 (394)
T 2dlc_X 234 NSKIDLLEEPKQV 246 (394)
T ss_dssp CCSCBTTCCHHHH
T ss_pred CCEEEEECCHHHH
T ss_conf 9879752699999
No 39
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=87.94 E-value=0.29 Score=26.25 Aligned_cols=76 Identities=25% Similarity=0.288 Sum_probs=50.9
Q ss_pred CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 5213568---8899999975225554333677761368999999999722663451153110110122110000012233
Q gi|254780285|r 329 GSYTYFA---ADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 329 Gt~~Y~t---~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
|-.+|.. -|+-+ .++| +-.+|.||.+|+.....++..++++++. ++..-++. ..||+ |||+-.|
T Consensus 154 ~~~~YP~lQa~D~~~------~~~~--~~~~G~DQ~~~~~l~r~~~~r~~~~~~~--~l~~p~l~-~ldG~--KmskS~~ 220 (323)
T 2cyb_A 154 SQMIYPLMQALDIAH------LGVD--LAVGGIDQRKIHMLARENLPRLGYSSPV--CLHTPILV-GLDGQ--KMSSSKG 220 (323)
T ss_dssp HHHHHHHHHHHHHHH------TTCS--EEEEEGGGHHHHHHHHHHGGGGTCCCCE--EEEECCCB-CTTSS--BCCTTTT
T ss_pred CEECCCCHHHHHHHH------CCCC--EEEECCHHHHHHHHHHHHHHHHCCCCEE--EEECCCCC-CCCCC--CCCCCCC
T ss_conf 200256322456763------2554--4650320567889999999970787504--76168523-77886--3578998
Q ss_pred CHHHHHHHHHHH
Q ss_conf 024567777763
Q gi|254780285|r 406 DFITLRHVVDEV 417 (586)
Q Consensus 406 ~~v~l~dll~ev 417 (586)
+.|.+.|--++|
T Consensus 221 n~I~L~D~pe~i 232 (323)
T 2cyb_A 221 NYISVRDPPEEV 232 (323)
T ss_dssp CSCBTTCCHHHH
T ss_pred CEEECCCCHHHH
T ss_conf 864423785899
No 40
>3m5w_A Tryptophanyl-tRNA synthetase; alpha-beta structure, csgid, aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding; 2.32A {Campylobacter jejuni}
Probab=87.83 E-value=0.19 Score=27.63 Aligned_cols=79 Identities=27% Similarity=0.272 Sum_probs=49.3
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCC------CEEEECCHHHCCCCCCCCC
Q ss_conf 521356---8889999997522555433367776136899999999972266345------1153110110122110000
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQ------INVLLCELVRLYRDGMPIK 399 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~------~~~~~~~~v~l~~dg~~~k 399 (586)
|..+|- +.||-+. ++| +-.+|.||..|+.-...++..+++.... ..+.......+..+|. |
T Consensus 123 ~~~~YP~lqaaDil~~------~~~--~vpvG~DQ~~h~~ltRdia~k~n~~~~~~~~~p~~~~~~~~~~~~~~~~~--K 192 (322)
T 3m5w_A 123 GLFSYPVLMAADILLF------DTR--IVPVGKDQIQHVEIARDIALKVNNEWGEIFTLPEARVNEEVAVVVGTDGA--K 192 (322)
T ss_dssp HHHHHHHHHHHHHHHT------TCS--EEECCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEEEC----CCCBCTTSS--B
T ss_pred CCCCCCHHHHHHHHHH------CCC--EEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC--C
T ss_conf 4017777774456762------786--22226551899999999999987553765443200134320003689998--6
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 012233024567777763
Q gi|254780285|r 400 MSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 400 mstR~G~~v~l~dll~ev 417 (586)
||+-.++.|.+.|--++|
T Consensus 193 MSkS~~n~I~l~D~~~~I 210 (322)
T 3m5w_A 193 MSKSYQNTIDIFSSEKTL 210 (322)
T ss_dssp CCGGGTCCCBSSSCHHHH
T ss_pred CCCCCCCCCCCCCCHHHH
T ss_conf 777888755355688899
No 41
>3i05_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding, protein biosynthesis; 2.80A {Trypanosoma brucei}
Probab=86.20 E-value=0.29 Score=26.32 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=46.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 4333677761368999999999722663451153110110122110000012233024567777763
Q gi|254780285|r 351 NMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 351 ~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~ev 417 (586)
..+=.+|.||..|+.--..++..+|+.++...+ ..++.. -+|...|||+..|+.|.+.|--++|
T Consensus 225 ~~lvpvG~DQ~~~~~ltRdia~k~~~~~p~~~~--~~~l~g-L~G~~kkmSss~~~~I~L~D~p~~I 288 (395)
T 3i05_A 225 FCLIPQAIDQDPYFRLTRDIAPRLGYLKPAVIH--SKFFPG-LSGPKGKMSSSSGTAVLLTDTEKMV 288 (395)
T ss_dssp EEEEEEEGGGHHHHHHHHHTHHHHTCCCCEEEE--ECCCCC-C-------------CCBTTCCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEC--CCCCCC-CCCCCCCCCCCCCCEEECCCCHHHH
T ss_conf 761215667899999999999982678760113--666555-7799877788998741457999999
No 42
>1yi8_B Tryptophanyl-tRNA synthetase; ligase; HET: TRP; 2.10A {Deinococcus radiodurans R1} PDB: 1yia_B* 1yid_B* 2a4m_A*
Probab=86.01 E-value=0.38 Score=25.45 Aligned_cols=79 Identities=28% Similarity=0.351 Sum_probs=50.0
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC------CCCEEEECCHHHCCCCCCCCC
Q ss_conf 521356---88899999975225554333677761368999999999722663------451153110110122110000
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK------AQINVLLCELVRLYRDGMPIK 399 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~------~~~~~~~~~~v~l~~dg~~~k 399 (586)
|-.+|- +.||-+. +..+-.+|.||..|+.-...+++.+++.. +...+....++.. .+|. .|
T Consensus 146 g~~~YP~lQaaDi~~~--------~~divpvG~DQ~~h~~LaRdia~~~n~~~~~~~~~P~~~~~~~~~l~g-L~g~-~K 215 (351)
T 1yi8_B 146 GFFVYPVSQAADIAAF--------GATLVPVGDDQLPMLEQTREIVRRFNALYAPVLAEPQAQLSRVPRLPG-LDGQ-AK 215 (351)
T ss_dssp HHHHHHHHHHHHHHHH--------TCSEEEECGGGHHHHHHHHHHHHHHHHHTCSCSCCCEEEECSSCSCCC-TTSS-SC
T ss_pred CCCCCCHHHHHHHHHC--------CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCC-CCCC-HH
T ss_conf 4455508765146540--------554467762379999999999999540047766786677641345657-7750-11
Q ss_pred CCCCCCCHHHHHHHHHHH
Q ss_conf 012233024567777763
Q gi|254780285|r 400 MSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 400 mstR~G~~v~l~dll~ev 417 (586)
||+..++.|.+.|--++|
T Consensus 216 mSkS~~~~I~l~D~~~~I 233 (351)
T 1yi8_B 216 MSKSLGNAIALGDSADEV 233 (351)
T ss_dssp CCTTTTCCCBTTCCHHHH
T ss_pred CCCCCCCCCCCCCCHHHH
T ss_conf 036853346778999999
No 43
>2cyb_A Tyrosyl-tRNA synthetase; rossmann-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TYR; 1.80A {Archaeoglobus fulgidus}
Probab=85.36 E-value=0.36 Score=25.65 Aligned_cols=43 Identities=28% Similarity=0.522 Sum_probs=29.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHH
Q ss_conf 2344322441177777856899999999850666410201477531455
Q gi|254780285|r 127 FVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQIN 175 (586)
Q Consensus 127 ~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~ 175 (586)
|+.--|++.||+||+= .+ -..+-+.-.|++|+ ..|+||-..++
T Consensus 36 y~G~~PTg~lHLGh~v-~~---~~~~~lq~~G~~~~--~~i~D~~a~~~ 78 (323)
T 2cyb_A 36 YVGYEPSGEIHLGHMM-TV---QKLMDLQEAGFEII--VLLADIHAYLN 78 (323)
T ss_dssp EEEECCCSCCBHHHHH-HH---HHHHHHHHTTCEEE--EEECHHHHHHT
T ss_pred EEEECCCCCCHHHHHH-HH---HHHHHHHHCCCEEE--EEECCHHHHHC
T ss_conf 9826999846799999-99---99999997799089--99343887634
No 44
>3jxe_A Tryptophanyl-tRNA synthetase; adenosine triphosphate, rossmann fold, crystallography, X-RAY, P. horikoshii, aminoacyl-tRNA synthetase; HET: TYM; 3.00A {Pyrococcus horikoshii}
Probab=84.14 E-value=0.4 Score=25.31 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 677761368999999999722663451153110110122110000012233024567777763
Q gi|254780285|r 355 VMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 355 Vv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~dll~ev 417 (586)
-+|.||..|+.....++..+|+.++...+. .++....+....+||+..++.|.+.|--++|
T Consensus 212 PvG~DQ~~h~~LtRdia~r~n~~~~~~~~~--~~ip~l~G~~gKmssS~~~s~I~L~D~pe~i 272 (392)
T 3jxe_A 212 PAAIDQDPYWRLQRDFAESLGYYKTAALHS--KFVPSLTSLSGKMSASKPETAIYLTDSPEDV 272 (392)
T ss_dssp EEEGGGHHHHHHHHHHTGGGTSCCCEEEEE--CCCCCSSCSSSCCCTTSGGGCCBTTCCHHHH
T ss_pred ECCHHHHHHHHHHHHHHHHCCCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCEEEECCCHHHH
T ss_conf 244777899999999997527888733454--3233568876666546788874505899999
No 45
>2ip1_A Tryptophanyl-tRNA synthetase; rossmann fold, structural genomics, PSI-2, protein structure initiative; HET: PG4; 1.80A {Saccharomyces cerevisiae} PDB: 3kt0_A* 3kt3_A* 3kt6_A* 3kt8_A*
Probab=83.30 E-value=0.61 Score=24.02 Aligned_cols=66 Identities=15% Similarity=0.148 Sum_probs=44.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC-CHHHHHHHHHHHH
Q ss_conf 54333677761368999999999722663451153110110122110000012233-0245677777632
Q gi|254780285|r 350 DNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG-DFITLRHVVDEVG 418 (586)
Q Consensus 350 d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G-~~v~l~dll~evg 418 (586)
...+-.+|.||..|+.--..++..+++.++...+.. ++... +|...|||+-.+ +.|.|.|--++|-
T Consensus 249 ~~~lvPvG~DQ~~hi~ltRdia~r~~~~~p~~i~~~--~l~~L-~g~~~KMSkS~~~s~I~L~D~pe~I~ 315 (432)
T 2ip1_A 249 TPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLHSR--FFPAL-QGSTTKMSASDDTTAIFMTDTPKQIQ 315 (432)
T ss_dssp CCEEEEEEGGGHHHHHHHHHHHHHHTSCCCEEEEEC--CCCCT-TC--------CGGGCCBTTCCHHHHH
T ss_pred CCCEEECCHHHHHHHHHHHHHHHHCCCCCCCCCCCC--CCCCC-CCCCCCCCCCCCCCEEECCCCHHHHH
T ss_conf 687665245478999999999985246887321465--53356-76323455677654787368999999
No 46
>2pid_A Tyrosyl-tRNA synthetase; aminoacyl-tRNA synthetase, protein-substrate complex, ATP- binding, ligase, mitochondrion, nucleotide-binding; HET: YSA; 2.20A {Homo sapiens}
Probab=82.95 E-value=0.8 Score=23.19 Aligned_cols=69 Identities=20% Similarity=0.273 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 888999999752255543336777613689999999997226634511531101101221100000122330245677
Q gi|254780285|r 335 AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 335 t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
+-|..+...+ .+--|=+-|+||...+..-...+..+|++++ ..+..-++. ..+|. |||+-.||.|.+++
T Consensus 199 a~D~~~L~~~----~~~diqiGG~DQ~~ni~~grdl~~~~~~~~~--~~lt~pLL~-~~~G~--KmgKS~~nai~L~~ 267 (356)
T 2pid_A 199 AYDFYYLFQR----YGCRVQLGGSDQLGNIMSGYEFINKLTGEDV--FGITVPLIT-STTGA--KLGKSAGNAVWLNR 267 (356)
T ss_dssp HHHHHHHHHH----HCCCEEEEEGGGHHHHHHHHHHHHHHSSCCC--EEEEECCCC----------------CCBSST
T ss_pred HHHHHHHHHH----CCCCEEEECCCCHHHHHHHHHHHHHHCCCCC--CEEEECCCC-CCCCC--CCCCCCCCCCCCCC
T ss_conf 8889999863----4985154034608899989999998269876--078605756-78897--03224578652134
No 47
>2ts1_A Tyrosyl-tRNA synthetase; ligase (synthetase); 2.30A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 3ts1_A* 1tyd_E* 1tya_E* 1tyc_A 1tyb_E* 4ts1_A* 1jh3_A
Probab=82.71 E-value=0.81 Score=23.14 Aligned_cols=45 Identities=18% Similarity=0.282 Sum_probs=33.2
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 2234432244-11777778568999999998506664102014775314555
Q gi|254780285|r 126 EFVSANPTGP-MHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 126 E~sSpNp~Kp-lHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
=|...-||.| ||+||+=.. -.-|-+.-+||+|+- -|||+-.++|.
T Consensus 33 ~y~G~DPTa~sLHlGhlv~l----~~l~~fq~~Gh~~i~--liGg~T~~IGD 78 (419)
T 2ts1_A 33 LYCGFDPTADSLHIGHLATI----LTMRRFQQAGHRPIA--LVGGATGLIGD 78 (419)
T ss_dssp EEEEECCSSSSCBGGGHHHH----HHHHHHHHTTCEEEE--EECTTGGGTCC
T ss_pred EEEEECCCCCCCCHHHHHHH----HHHHHHHHCCCEEEE--EECCCEEEECC
T ss_conf 99936789875308779999----999999986990899--96454157328
No 48
>3hv0_A Tryptophanyl-tRNA synthetase; tRNA-ligase, ATP-binding, aminoacyl-tRNA synthetase, ligase, nucleotide-binding; HET: TRP; 2.42A {Cryptosporidium parvum iowa II}
Probab=81.19 E-value=0.51 Score=24.58 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=43.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCC-CCCCHHHHHHHHHHHH
Q ss_conf 54333677761368999999999722663451153110110122110000012-2330245677777632
Q gi|254780285|r 350 DNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSK-RAGDFITLRHVVDEVG 418 (586)
Q Consensus 350 d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmst-R~G~~v~l~dll~evg 418 (586)
...+-.+|.||.+|+.--..+++.+++.++...+. .++....++ ..|||+ ..++.|.+.|--++|.
T Consensus 220 ~~~lvPvG~DQ~~hi~ltRdia~r~~~~~~~~~~~--~~lp~L~G~-~~KMSsS~~~s~I~L~D~~~~i~ 286 (393)
T 3hv0_A 220 IHCLVPHAIDQDPYFRMVRDVAPRLGYLKPSSIHS--IFLPSLQGS-QTKMSASVQNSSIFVNDNEESIR 286 (393)
T ss_dssp CCEEEEEEGGGHHHHHHHHHHTGGGTCCCCEEEEE--CCCCC--------------CCCCBTTCCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEECC--CCCCCCCCC-CCCCCCCCCCCCEECCCCHHHHH
T ss_conf 76625045648999999999999836667630025--544446786-66666788432013459868999
No 49
>2el7_A Tryptophanyl-tRNA synthetase; aminoacyl-tRNA synthetase, translation, structural genomics, NPPSFA; 2.50A {Thermus thermophilus HB8}
Probab=80.21 E-value=2.5 Score=19.73 Aligned_cols=79 Identities=24% Similarity=0.238 Sum_probs=47.8
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCE------E-EECCHHHCCCCCCCC
Q ss_conf 521356---888999999752255543336777613689999999997226634511------5-311011012211000
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQIN------V-LLCELVRLYRDGMPI 398 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~------~-~~~~~v~l~~dg~~~ 398 (586)
|..+|- +.||-+. ++| +=.+|.||..|+.....++..+++...... + .....+.. .+|. .
T Consensus 125 g~~~YP~lQaaDil~~------~~d--~vpvG~DQ~~~~~l~Rdia~k~n~~~~~~~~~~~~~~~~~~~~l~g-l~g~-~ 194 (337)
T 2el7_A 125 GLLMYPVLQAADILIY------KAD--TVPVGEDQVQHIELTREIARRFNHLFGETFPEPQALLNPEAPRVPG-IDGK-A 194 (337)
T ss_dssp HHHHHHHHHHHHHHHT------TCC--EEECCGGGCHHHHHHHHHHHHHHHHHSSCCCCCEEECCTTSCCCBC-TTSS-S
T ss_pred CCCCCHHHHCCCHHHH------CCC--EEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC-CCCC-C
T ss_conf 1102338762470542------498--6233711689999738999999987242568762000222220327-7875-4
Q ss_pred CCCCCCCCHHHHHHHHHHH
Q ss_conf 0012233024567777763
Q gi|254780285|r 399 KMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 399 kmstR~G~~v~l~dll~ev 417 (586)
|||+..++.+.+.|--+++
T Consensus 195 kmSks~~~~I~l~D~~~~i 213 (337)
T 2el7_A 195 KMSKSLGNTIGLLEPEESI 213 (337)
T ss_dssp BCCTTTTCCCBSSSCHHHH
T ss_pred CCCCCCCCCCCCCCCCHHH
T ss_conf 2257777753013780566
No 50
>2jan_A Tyrosyl-tRNA synthetase; protein biosynthesis, aminoacyl-tRNA synthetase, tyrrs, ligase, tyrosine, RNA-binding, ATP-binding; 2.9A {Mycobacterium tuberculosis}
Probab=79.95 E-value=0.82 Score=23.12 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=31.9
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 2234432244-11777778568999999998506664102014775314555
Q gi|254780285|r 126 EFVSANPTGP-MHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 126 E~sSpNp~Kp-lHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
=|...-||.| ||+||+=. =-.-|-+.-+||+|+-. |||+=.++|.
T Consensus 35 ~y~G~DPTa~sLHlGh~v~----l~~l~~fq~~Gh~~v~l--iG~~Ta~IGD 80 (432)
T 2jan_A 35 VYAGFDPTAPSLHAGHLVP----LLTLRRFQRAGHRPIVL--AGGATGMIGD 80 (432)
T ss_dssp EEEEECCSSSSCBGGGHHH----HHHHHHHHHTTCEEEEE--ECHHHHHHHC
T ss_pred EEEEECCCCCCCCHHHHHH----HHHHHHHHHCCCEEEEE--ECCCCEECCC
T ss_conf 9980688997630877999----99999999879979999--7654010579
No 51
>1jil_A Tyrrs, tyrosyl-tRNA synthetase, tyrosyl-transfer; truncation, structure based inhibitor design, ligase; HET: 485; 2.20A {Staphylococcus aureus} SCOP: c.26.1.1 PDB: 1jij_A* 1jii_A* 1jik_A*
Probab=79.78 E-value=1.3 Score=21.73 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=33.2
Q ss_pred CCCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 02234432244-11777778568999999998506664102014775314555
Q gi|254780285|r 125 IEFVSANPTGP-MHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 125 VE~sSpNp~Kp-lHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
-=|...-||.| ||+||+=.- -.-|-++-+||+|+- -|||+=.++|.
T Consensus 34 ~~y~G~DPTa~sLHlGh~v~l----~~l~~~q~~Gh~~i~--liGg~T~~IGD 80 (420)
T 1jil_A 34 TLYCGADPTADSLHIGHLLPF----LTLRRFQEHGHRPIV--LIGGGTGMIGD 80 (420)
T ss_dssp EEEEEECCSSSSCBHHHHHHH----HHHHHHHHTTCEEEE--EECTTGGGTCC
T ss_pred EEEEEECCCCCCCCHHHHHHH----HHHHHHHHCCCEEEE--EECCCCCCCCC
T ss_conf 799926789876215539999----999999986991799--96675301369
No 52
>3foc_A Tryptophanyl-tRNA synthetase; structural genomics, giardiasis, aminoacyl-tRNA synthetase, ligase; 2.09A {Giardia lamblia atcc 50803}
Probab=78.40 E-value=2.8 Score=19.35 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=44.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCH-HHHHHHHHHHH
Q ss_conf 33367776136899999999972266345115311011012211000001223302-45677777632
Q gi|254780285|r 352 MIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDF-ITLRHVVDEVG 418 (586)
Q Consensus 352 ~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~-v~l~dll~evg 418 (586)
.+--+|.||..|+.-...++..+|+.++...+..+ +..| +|...|||+..++. |.|.|--++|.
T Consensus 289 ~lvp~G~DQ~~~~~ltRdia~r~~~~~p~~~~~~~-lpgL--~G~~~KMSkS~pnS~I~L~D~pe~I~ 353 (451)
T 3foc_A 289 CLIASGIEQDPYFRLARDLAPRMGHPKNAYLLGKF-LPGL--QGSGTKMSASDPNSAIYLTDTPAQIK 353 (451)
T ss_dssp EEEEECTTTHHHHHHHHHHTTTTTSCCCEEEEECC-CCBT--TBTTCCCCTTCGGGSCBTTCCHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCC-CCCC--CCCCCCCCCCCCCCEEEECCCHHHHH
T ss_conf 20136457899999999999983899880250377-6677--89877656789986334058989999
No 53
>2g36_A Tryptophanyl-tRNA synthetase; TM0492, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI; HET: TRP; 2.50A {Thermotoga maritima}
Probab=73.55 E-value=3.7 Score=18.49 Aligned_cols=81 Identities=20% Similarity=0.142 Sum_probs=49.4
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC------EEEECCHHHCCCCCCCCCCCC
Q ss_conf 52135688899999975225554333677761368999999999722663451------153110110122110000012
Q gi|254780285|r 329 GSYTYFAADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI------NVLLCELVRLYRDGMPIKMSK 402 (586)
Q Consensus 329 Gt~~Y~t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~------~~~~~~~v~l~~dg~~~kmst 402 (586)
|-.+|..--.|-+. .++-.+-.+|.||..|+.-...++..+++..... .......+ ...+|+ |||+
T Consensus 137 ~~~~YP~lqaaDil-----~~~~~~v~~G~DQ~~~~~l~R~ia~k~n~~~~~~~~~p~~~~~~~~~l-~~~~g~--KmSk 208 (340)
T 2g36_A 137 GFLIYPVLQAADIL-----IYKAEGVPVGEDQVYHIELTREIARRFNYLYDEVFPEPEAILSRVPKL-PGTDGR--KMSK 208 (340)
T ss_dssp HHHTHHHHHHHHHH-----TTTCSEEEECGGGHHHHHHHHHHHHHHHHHSCCCCCCCEEEECCSCCC-CCTTSS--CCCG
T ss_pred CCCCCCHHHHHHHH-----HCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC-CCCCCC--CCCC
T ss_conf 43447555310234-----225777766377899999999999987652033467863101235678-999999--7888
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 233024567777763
Q gi|254780285|r 403 RAGDFITLRHVVDEV 417 (586)
Q Consensus 403 R~G~~v~l~dll~ev 417 (586)
-.++.|.++|--+++
T Consensus 209 S~~~~I~l~D~~~~i 223 (340)
T 2g36_A 209 SYGNIINLEISEKEL 223 (340)
T ss_dssp GGTCCCBTTCCHHHH
T ss_pred CCCCCCEECCCHHHH
T ss_conf 745555202765788
No 54
>2zp1_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, ligase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, nucleotide-binding; HET: IYR; 1.70A {Methanocaldococcus jannaschii} PDB: 1zh6_A* 1j1u_A* 1u7d_A 2q1g_A* 2pxh_A* 1zh0_A* 2q1i_A* 2ag6_A* 3d6u_A* 3d6v_A* 1u7x_A 2hgz_A*
Probab=70.54 E-value=1.9 Score=20.64 Aligned_cols=73 Identities=19% Similarity=0.237 Sum_probs=41.7
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCC
Q ss_conf 521356---88899999975225554333677761368999999999722663451153110110122110000012233
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAG 405 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G 405 (586)
|-.+|- +-|+-+ ++-.+-++|.||.+|+..-..++ .. . ......-++. ..||.. |||+..|
T Consensus 147 g~f~YP~lQaaD~l~--------~~~~~~~~G~DQ~~~~~l~rdl~----~~-~-~~~~~~p~l~-g~dG~~-kmsks~~ 210 (314)
T 2zp1_A 147 AEVIYPIMQVNTSHY--------LGVDVAVGGMEQRKIHMLARELL----PK-K-VVCIHNPVLT-GLDGEG-KMSSSKG 210 (314)
T ss_dssp HHHHHHHHHHHHHHH--------HTCSEEEEEGGGHHHHHHHHHHS----SS-C-CEEEEECCCB-CTTSSS-BCCTTTT
T ss_pred CEEECCCCHHHHHHH--------CCCCEEEECHHHHHHHHHHHHHH----HC-C-CCCCCCCCCC-CCCCCC-CCCCCCC
T ss_conf 424436401002440--------47847765188889999867765----30-2-3212577767-988745-6667888
Q ss_pred CHHHHHHHHHHH
Q ss_conf 024567777763
Q gi|254780285|r 406 DFITLRHVVDEV 417 (586)
Q Consensus 406 ~~v~l~dll~ev 417 (586)
+.|.|.|--++|
T Consensus 211 n~I~L~D~pe~i 222 (314)
T 2zp1_A 211 NFIAVDDSPEEI 222 (314)
T ss_dssp CSCBTTCCHHHH
T ss_pred CEEEEECCHHHH
T ss_conf 877740787899
No 55
>3n9i_A Tryptophanyl-tRNA synthetase; tryptophan-tRNA ligase, csgid, structural genomics, niaid, center for structural genomics infectious diseases; 1.95A {Yersinia pestis}
Probab=69.54 E-value=2.9 Score=19.24 Aligned_cols=81 Identities=16% Similarity=0.192 Sum_probs=44.8
Q ss_pred CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC----EEEEC---CH-HHCCCCCC-
Q ss_conf 5213568---8899999975225554333677761368999999999722663451----15311---01-10122110-
Q gi|254780285|r 329 GSYTYFA---ADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQI----NVLLC---EL-VRLYRDGM- 396 (586)
Q Consensus 329 Gt~~Y~t---~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~----~~~~~---~~-v~l~~dg~- 396 (586)
|..+|-. .||-+. ++| +=.+|.||..|+.....++..+|+..... ..+.. .. ..|..++.
T Consensus 136 g~~~YP~lqaaDIl~~------~~~--~vpvG~DQ~~h~eltRdia~kfn~~y~~~~~~P~~~~~~~~~~~~~l~~~~~k 207 (346)
T 3n9i_A 136 GLFDYPVLMAADILLY------QTN--QVPVGEDQKQHLELSRDIASRFNNLYGDIFKIPEPFIPKAGARVMSLQDPTKK 207 (346)
T ss_dssp HHHHHHHHHHHHHHTT------TCS--EECCCGGGHHHHHHHHHHHHHHHHHHSSCSCCCEECCCCCCCCCBCSSCTTSB
T ss_pred CCCCCCHHHCCCCHHC------CCC--CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCCCCC
T ss_conf 0256856651331310------887--34563756999999999999988655883256765657554440157886555
Q ss_pred CCCCCCCCCCHHHHHHHHHHH
Q ss_conf 000012233024567777763
Q gi|254780285|r 397 PIKMSKRAGDFITLRHVVDEV 417 (586)
Q Consensus 397 ~~kmstR~G~~v~l~dll~ev 417 (586)
--|||+-.|+.|.+.|--++|
T Consensus 208 mskSs~s~~n~I~l~d~~~~I 228 (346)
T 3n9i_A 208 MSKSDDNRNNVIELLEDPKSV 228 (346)
T ss_dssp CCTTCSCGGGCCBTTSCHHHH
T ss_pred CCCCCCCCCEEEEECCCHHHH
T ss_conf 665545664278836787788
No 56
>1y42_X Tyrosyl-tRNA synthetase, mitochondrial; CYT-18, tRNA ligase, group I intron; HET: TYR; 1.95A {Neurospora crassa} PDB: 2rkj_A
Probab=69.37 E-value=4.6 Score=17.86 Aligned_cols=45 Identities=31% Similarity=0.505 Sum_probs=33.5
Q ss_pred CCCCCCCCCC-CCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 2234432244-11777778568999999998506664102014775314555
Q gi|254780285|r 126 EFVSANPTGP-MHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 126 E~sSpNp~Kp-lHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
=|+.--|+.| |||||+=.- -.-|-++-+||+|+. -||||=.++|.
T Consensus 67 ~Y~G~DPTa~SLHlGhLv~l----~~L~~~Q~~Gh~~i~--LiGg~Ta~IGD 112 (392)
T 1y42_X 67 AYVGIDPTAPSLHVGHLLPL----MPLFWMYLEGYKAFT--LIGGSTAKIGD 112 (392)
T ss_dssp EEEEECCCSSSCBGGGHHHH----HHHHHHHHHTCEEEE--EECTTTTTTCC
T ss_pred EEEEECCCCCCCCHHHHHHH----HHHHHHHHCCCCEEE--EECCCEEEECC
T ss_conf 99823689864208779999----999999987994799--97675367049
No 57
>3hzr_A Tryptophanyl-tRNA synthetase; APO tRNA-ligase, structural genomics, medical structural genomics of pathogenic protozoa, MSGPP; 3.00A {Entamoeba histolytica}
Probab=67.35 E-value=5 Score=17.58 Aligned_cols=65 Identities=12% Similarity=0.183 Sum_probs=44.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCC-CCCCCHHHHHHHHHHHH
Q ss_conf 5433367776136899999999972266345115311011012211000001-22330245677777632
Q gi|254780285|r 350 DNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMS-KRAGDFITLRHVVDEVG 418 (586)
Q Consensus 350 d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kms-tR~G~~v~l~dll~evg 418 (586)
..++=.+|.||..|+.....++..+|+.++...+.. ++... +|.. ||| +..++.|.|.|--++|-
T Consensus 224 ~~~lVPvG~DQ~~~~~ltRdia~r~~~~~p~~i~~~--~lpgL-~G~~-KMSsS~~~s~I~L~D~p~~I~ 289 (386)
T 3hzr_A 224 ARCLVLDSIKNVQFHSIIDQIATTLNFIQPTVLFHK--MVPLL-SGVT-KFDIPSDHNSILLSDNAKQVE 289 (386)
T ss_dssp CEEEEEEEGGGHHHHHHHHHHHHHHTCCCCEEEEEC--CCCCT-TCTT-CCCCCCTTTSCBTTCCHHHHH
T ss_pred CCEEECCCCCHHHHHHHHHHHHHHCCCCCCEEECCC--CCCCC-CCCC-CCCCCCCCCEEEEECCHHHHH
T ss_conf 530305773459999999999986356887021255--44567-8876-545689986257507989998
No 58
>2j5b_A Tyrosyl-tRNA synthetase; ligase, protein biosynthesis, ATP-binding; HET: TYB; 2.2A {Acanthamoeba polyphaga mimivirus}
Probab=65.24 E-value=5.5 Score=17.31 Aligned_cols=84 Identities=17% Similarity=0.030 Sum_probs=49.6
Q ss_pred CCCCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCC
Q ss_conf 46521356---888999999752255543336777613689999999997226634511531101101221100000122
Q gi|254780285|r 327 SDGSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKR 403 (586)
Q Consensus 327 sDGt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR 403 (586)
+=|..+|. +-|+-+. + ..+ ..+-..|.+|..|+......+..++.+.+ .+....++....++...+||+-
T Consensus 165 ~~~~~~YPllqAaDil~l--~-~~~--~d~~~~g~dqr~~~~~~r~~~~~~~~~~~--~~~~~~~~~~L~~~~~kmsss~ 237 (348)
T 2j5b_A 165 KASQIFYPCMQAADVFEL--V-PEG--IDICQLGIDQRKVNMLAIEYANDRGLKIP--ISLSHHMLMSLSGPKKKMSKSD 237 (348)
T ss_dssp ----CCHHHHHHHHHHHS--S-TTC--CSEECCBGGGHHHHHHHHHHHHHTTCCCC--EEEEBCCCCCTTCSSCCCSTTC
T ss_pred CCCEECCHHHHHHHHHHH--C-CCC--CCCCHHHHHHHHHHHHHHHHHHHCCCCCC--EEEECCCCCCCCCCCCCCCCCC
T ss_conf 632003315666677740--3-444--55420178779999999864021056753--0110222235687433445678
Q ss_pred CCCHHHHHHHHHHH
Q ss_conf 33024567777763
Q gi|254780285|r 404 AGDFITLRHVVDEV 417 (586)
Q Consensus 404 ~G~~v~l~dll~ev 417 (586)
.++.|.+.|--+++
T Consensus 238 ~~~~I~l~D~~~~i 251 (348)
T 2j5b_A 238 PQGAIFMDDTEQEV 251 (348)
T ss_dssp GGGSCBTTCCHHHH
T ss_pred CCCEEEEECCHHHH
T ss_conf 87555510586789
No 59
>1iio_A Conserved hypothetical protein MTH865; 4-helical bundle, monomer, structural genomics, unknown function; NMR {Methanothermobacterthermautotrophicus str} SCOP: a.39.4.1
Probab=52.20 E-value=1.3 Score=21.60 Aligned_cols=66 Identities=15% Similarity=0.165 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCCCCC----CCCEEEEECCCCCCCCCCCHHHHHHHHHHCC------CHHHHHHHHHH
Q ss_conf 9868999999999999998604888212----2452774178801274110489998888289------97999999998
Q gi|254780285|r 1 MYLFADFSSRLKNYLKEIDCKIKVEKKI----LDRIVIERPRDCAHGHLSTNAAMILSRPLGL------DPLTIAELIVA 70 (586)
Q Consensus 1 M~~~~~l~~~i~~~l~~~~~~~~~~~~~----~~~i~ve~p~~~~~GD~~~n~a~~lAK~~kk------~P~~iA~~i~~ 70 (586)
|.+-.+++++|.++++.+ ..|-.. ++-+---++...+-||... -|+-+.|.++- ++.++|..|++
T Consensus 6 m~~ke~i~~qi~~a~~~a----~FPI~s~~eL~~alP~G~~t~c~~gd~e~-Ta~El~~~l~~~DFP~k~a~~lad~iv~ 80 (84)
T 1iio_A 6 MGVKEDIRGQIIGALAGA----DFPINSPEELMAALPNGPDTTCKSGDVEL-KASDAGQVLTADDFPFKSAEEVADTIVN 80 (84)
T ss_dssp CSHHHHHHHHHHHHHTTS----SSTTBHHHHHHHHCTTSSCCCCCBTTBCC-CTTTTGGGSCGGGSBCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCC----CCCCCCHHHHHHHCCCCCCCCEEECCEEE-EHHHHHHHCCCCCCCCCCHHHHHHHHHH
T ss_conf 248999999999997179----88989999999748899998603389956-6999985477546887899999999998
Q ss_pred H
Q ss_conf 3
Q gi|254780285|r 71 R 71 (586)
Q Consensus 71 ~ 71 (586)
+
T Consensus 81 r 81 (84)
T 1iio_A 81 K 81 (84)
T ss_dssp H
T ss_pred H
T ss_conf 6
No 60
>2yy5_A Tryptophanyl-tRNA synthetase; aminoaccyl tRNA synthetase, structural genomics, NPPSFA; HET: WSA; 2.55A {Mycoplasma pneumoniae M129}
Probab=49.32 E-value=6.7 Score=16.74 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=46.0
Q ss_pred CCHHHHH---HHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCC--CCCE--EEECC----HHHCCCCCCC
Q ss_conf 5213568---8899999975225554333677761368999999999722663--4511--53110----1101221100
Q gi|254780285|r 329 GSYTYFA---ADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKK--AQIN--VLLCE----LVRLYRDGMP 397 (586)
Q Consensus 329 Gt~~Y~t---~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~--~~~~--~~~~~----~v~l~~dg~~ 397 (586)
|..+|-. .||-+ ++--+-.+|.||..|+.....++..+++.. .... ..... +..+..+|+.
T Consensus 131 g~~~YP~lQaaDil~--------~~~~~vp~G~DQ~~~~~ltRdia~kfn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (348)
T 2yy5_A 131 GLLTYPALMAGDILL--------YQPDIVPVGNDQKQHLELTRDLAQRIQKKFKLKLRLPQFVQNKDTNRIMDLFDPTKK 202 (348)
T ss_dssp HHHHHHHHHHHHHHT--------TCCSEEECCGGGHHHHHHHHHHHHHHHHHHCCCCCCCEEECCTTTTTCBCSSCTTSB
T ss_pred HHCCCHHHHHCCHHH--------HCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 410481675202264--------178878787218999999999987502344544567732123320013567688767
Q ss_pred CCCCC-CCCCHHHHHHHHHHH
Q ss_conf 00012-233024567777763
Q gi|254780285|r 398 IKMSK-RAGDFITLRHVVDEV 417 (586)
Q Consensus 398 ~kmst-R~G~~v~l~dll~ev 417 (586)
.+||+ -.++.|.+.|--++|
T Consensus 203 ~~kS~~~~~s~I~l~D~~~~I 223 (348)
T 2yy5_A 203 MSKSSKNQNGVIYLDDPKEVV 223 (348)
T ss_dssp CCSSCSCGGGCCBTTCCHHHH
T ss_pred CCCCCCCCCCEEEECCCHHHH
T ss_conf 776678988668843878889
No 61
>2ekd_A Hypothetical protein PH0250; NPPSFA, national project on protein structural and functional analyses; 2.30A {Pyrococcus horikoshii OT3}
Probab=49.21 E-value=10 Score=15.50 Aligned_cols=39 Identities=13% Similarity=0.209 Sum_probs=27.7
Q ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECCC
Q ss_conf 5655410002234432244117777785689999999985066641020147
Q gi|254780285|r 117 IGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYIN 168 (586)
Q Consensus 117 ~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyvg 168 (586)
...|++|+|||+|.-|-. . .+..+.+++|+.|...--.+
T Consensus 12 ~k~GEtVLVEY~S~~~~e---~----------~~~~ii~~~~~~vlI~DilD 50 (207)
T 2ekd_A 12 FRVGETVLVEYSGTSRAE---L----------LLYYIVNNSKLPIVVDDILD 50 (207)
T ss_dssp SCTTCEEEEEECTTSCTH---H----------HHHHHHHHCSSCBEEEEETT
T ss_pred CCCCCEEEEEECCCCCHH---H----------HHHHHHHHCCCCEEEEECCC
T ss_conf 899978999947998689---9----------99999987699779998246
No 62
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=48.18 E-value=4.4 Score=18.00 Aligned_cols=47 Identities=21% Similarity=0.186 Sum_probs=32.4
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 541000223443224411777778568999999998506664102014
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYI 167 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyv 167 (586)
|.....+|.|.+|.+-++||+|-..+--+-|.++++..|- |.+....
T Consensus 3 g~~~~~~~g~~~PS~~l~V~nLp~~~te~~L~~lF~~~G~-V~~~~~~ 49 (105)
T 1sjq_A 3 GSHHHHHHGSGVPSRVIHIRKLPIDVTEGEVISLGLPFGK-VTNLLML 49 (105)
T ss_dssp ---------CCCCCCEEEECSCCTTSCHHHHHHHHHHHCC-EEEEEEE
T ss_pred CCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCE-EEEEECC
T ss_conf 8645477849999868999499999899999998635788-9255316
No 63
>1i6k_A TRPRS, tryptophanyl-tRNA synthetase; class I tRNA synthetase, AARS, induced FIT, ligase; HET: TYM; 1.72A {Geobacillus stearothermophilus} SCOP: c.26.1.1 PDB: 1i6l_A* 1i6m_A* 1m83_A* 1mau_A* 1maw_A* 1mb2_A* 2ov4_A* 3fhj_A* 3fi0_A* 1d2r_A
Probab=47.72 E-value=7.9 Score=16.21 Aligned_cols=79 Identities=24% Similarity=0.336 Sum_probs=43.5
Q ss_pred CCHHHH---HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEC-------C-HHHCCCCCCC
Q ss_conf 521356---8889999997522555433367776136899999999972266345115311-------0-1101221100
Q gi|254780285|r 329 GSYTYF---AADLAYFKCKYERGFDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLC-------E-LVRLYRDGMP 397 (586)
Q Consensus 329 Gt~~Y~---t~DiA~~~~k~e~~~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~-------~-~v~l~~dg~~ 397 (586)
|..+|- +.||-+. ++| +-.+|.||..|+.....++..+++.....-+... . +..+..+++
T Consensus 121 g~l~YP~lQaADIl~~------~~d--~vpvG~DQ~~h~~ltRdia~k~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 191 (328)
T 1i6k_A 121 GLLTYPPLMAADILLY------NTD--IVPVGEDQKQHIELTRDLAERFNKRYGELFTIPEARIPKVGARIMSLVDPTK- 191 (328)
T ss_dssp HHHTHHHHHHHHHHTT------TCS--EEECCGGGHHHHHHHHHHHHHHHHHHCSCCCCCEEECCSSSSSCBCSSCTTS-
T ss_pred CCCCCCHHHHHCCHHH------CCC--CCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCCC-
T ss_conf 3237568762030631------899--1548802689999999999874652487567731135654345652489876-
Q ss_pred CCCCC---CCCCHHHHHHHHHHH
Q ss_conf 00012---233024567777763
Q gi|254780285|r 398 IKMSK---RAGDFITLRHVVDEV 417 (586)
Q Consensus 398 ~kmst---R~G~~v~l~dll~ev 417 (586)
|||. ...+.+.+.|--+++
T Consensus 192 -kmskS~~~~~~~I~l~d~~~~i 213 (328)
T 1i6k_A 192 -KMSKSDPNPKAYITLLDDAKTI 213 (328)
T ss_dssp -BCCTTCSCGGGCCBTTCCHHHH
T ss_pred -CCCCCCCCCCCCCCCCCCHHHH
T ss_conf -6776789855530365899999
No 64
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=46.79 E-value=11 Score=15.25 Aligned_cols=39 Identities=18% Similarity=0.230 Sum_probs=32.3
Q ss_pred CCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEE
Q ss_conf 5410002234432244117777785689999999985066641020
Q gi|254780285|r 120 GTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREY 165 (586)
Q Consensus 120 ~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~n 165 (586)
+|||+|=+.||++.. -|..+-+....-|+..|++|...+
T Consensus 2 ~KKvLII~aHP~~~S-------~~~al~~~~~~~l~~~G~eV~v~D 40 (273)
T 1d4a_A 2 GRRALIVLAHSERTS-------FNYAMKEAAAAALKKKGWEVVESD 40 (273)
T ss_dssp CCEEEEEECCSCTTS-------HHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEECCCCCC-------HHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 865999981899855-------799998510789997899799998
No 65
>2dew_X Protein-arginine deiminase type IV; histone modification enzyme, hydrolase; 2.10A {Homo sapiens} SCOP: b.2.9.1 b.6.1.6 d.126.1.5 PDB: 2dex_X 2dey_X 2dw5_A* 1wda_A* 1wd9_A* 1wd8_A
Probab=46.52 E-value=7.7 Score=16.31 Aligned_cols=11 Identities=27% Similarity=0.495 Sum_probs=4.4
Q ss_pred CCCEECCCCCC
Q ss_conf 54100022344
Q gi|254780285|r 120 GTKVNIEFVSA 130 (586)
Q Consensus 120 ~~kVvVE~sSp 130 (586)
..||.|.|-.|
T Consensus 97 ~~kv~~sy~~~ 107 (671)
T 2dew_X 97 DQKVQISYYGP 107 (671)
T ss_dssp CEEEEEEEEET
T ss_pred CCEEEEEEECC
T ss_conf 87799998799
No 66
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=43.15 E-value=8.3 Score=16.08 Aligned_cols=16 Identities=38% Similarity=0.640 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHCCCC
Q ss_conf 5799999999974985
Q gi|254780285|r 271 SPIRDIIDNLARQGYV 286 (586)
Q Consensus 271 ~~i~~~i~~l~~~g~~ 286 (586)
+.+..++++|+.-|++
T Consensus 96 ~iiR~~LQqLE~~g~v 111 (150)
T 2v7f_A 96 SIIRKALQQLEAAGFV 111 (150)
T ss_dssp HHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHCCCE
T ss_conf 8999999999868887
No 67
>2yxn_A Tyrosyl-tRNA synthetase; tRNA synthetases class I, structural genomics, NPPSFA; HET: AZY; 1.80A {Escherichia coli str} PDB: 1wq3_A* 1wq4_A* 1x8x_A* 1vbn_A* 1vbm_A*
Probab=43.01 E-value=12 Score=14.86 Aligned_cols=59 Identities=20% Similarity=0.293 Sum_probs=41.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCHHHCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 5543336777613689999999997226634511531101101221100000122330245677
Q gi|254780285|r 349 FDNMIYVMGSDHSGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRH 412 (586)
Q Consensus 349 ~d~~iyVv~~~Q~~h~~~v~~~~~~lg~~~~~~~~~~~~~v~l~~dg~~~kmstR~G~~v~l~d 412 (586)
++-.+=+-|+||...+..-...++.+|..++. .+..-++. ..+|. ||++-.|+.+.++.
T Consensus 190 ~~~~iqiGGsDQ~~ni~~Grdl~~~~~~~~~~--~it~pLl~-~~~G~--K~gKS~~n~i~l~~ 248 (322)
T 2yxn_A 190 YGVVLCIGGSDQWGNITSGIDLTRRLHQNQVF--GLTVPLIT-KADGT--KFGKTEGGAVWLDP 248 (322)
T ss_dssp HCEEEEEECTTCHHHHHHHHHHHHHHHCCCCE--EEECCCCB-CTTSC--BTTEETTEECBSST
T ss_pred CCCEEEECCCCHHHHHHHHHHHHHHHCCCCCE--EEEECCCC-CCCHH--HHHHHHCCCCCCCC
T ss_conf 78315653652377888799999983699828--99821653-01014--78887337653222
No 68
>3jyv_T S19E protein; eukaryotic ribosome, RACK1 protein, flexible fitting; HET: 2MG H2U M2G OMC OMG YYG PSU 5MC 7MG 5MU 1MA; 8.90A {Thermomyces lanuginosus}
Probab=42.26 E-value=8.7 Score=15.93 Aligned_cols=13 Identities=23% Similarity=0.503 Sum_probs=4.5
Q ss_pred HHHHHHHHHHCCC
Q ss_conf 9999999997498
Q gi|254780285|r 273 IRDIIDNLARQGY 285 (586)
Q Consensus 273 i~~~i~~l~~~g~ 285 (586)
+..++++|++-|+
T Consensus 98 iR~~LQqLE~~g~ 110 (141)
T 3jyv_T 98 NRKVLQALEKIGI 110 (141)
T ss_dssp HHHHHHHHHTTTS
T ss_pred HHHHHHHHHHCCC
T ss_conf 9999999987888
No 69
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, non-classical hydrogen bonds; 1.80A {Archaeoglobus fulgidus dsm 4304} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A
Probab=41.87 E-value=13 Score=14.74 Aligned_cols=37 Identities=14% Similarity=0.207 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHHHH
Q ss_conf 7856899999999850666410201477531455567
Q gi|254780285|r 142 RCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLA 178 (586)
Q Consensus 142 RsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~li 178 (586)
=+.++++-++-+|+-.||+|....-.||...++..+.
T Consensus 17 ~~~~~a~i~~~~Le~~Gy~Ve~~~~~~~~~~~~~al~ 53 (275)
T 1sw5_A 17 EQYILANMIAILLEENGYKAEVKEGLGGTLVNYEALK 53 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEECTTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHH
T ss_conf 9999999999999986996599864786088999997
No 70
>2b7l_A Glycerol-3-phosphate cytidylyltransferase; rossmann fold; 3.00A {Staphylococcus aureus}
Probab=34.62 E-value=9.9 Score=15.54 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=12.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 244117777785689999999985066641
Q gi|254780285|r 133 TGPMHVGHCRCAVVGDTLASLMAFSGYEVT 162 (586)
Q Consensus 133 ~KplHVGHlRsaiIGdsi~ril~~~G~~V~ 162 (586)
-=+||.||+|= |.+.-+.+.+-|+
T Consensus 10 FD~lH~GHi~~------l~~Ak~~gd~liV 33 (132)
T 2b7l_A 10 YDLLHYGHIEL------LRRAREMGDYLIV 33 (132)
T ss_dssp CCSCCHHHHHH------HHHHHHTSSEEEE
T ss_pred ECCCCHHHHHH------HHHHHHHCCEEEE
T ss_conf 78899899999------9999972999999
No 71
>1od6_A PPAT, phosphopantetheine adenylyltransferase; coenzyme A biosynthesis, nucleotidyltransferase; HET: PNS; 1.5A {Thermus thermophilus} SCOP: c.26.1.3
Probab=33.20 E-value=11 Score=15.29 Aligned_cols=10 Identities=30% Similarity=0.554 Sum_probs=7.5
Q ss_pred CCCCCHHHHH
Q ss_conf 2441177777
Q gi|254780285|r 133 TGPMHVGHCR 142 (586)
Q Consensus 133 ~KplHVGHlR 142 (586)
--|+|.||++
T Consensus 9 FdP~H~GHl~ 18 (160)
T 1od6_A 9 FDPLTNGHLD 18 (160)
T ss_dssp CTTCCHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 7976899999
No 72
>2rin_A Putative glycine betaine-binding ABC transporter protein; type II binding protein, aromatic BOX, acetylcholine, protein binding; HET: ACH; 1.80A {Rhizobium meliloti} PDB: 2rej_A 2rf1_A 2reg_A* 3hcq_A
Probab=30.83 E-value=19 Score=13.56 Aligned_cols=41 Identities=12% Similarity=0.242 Sum_probs=27.7
Q ss_pred CCCCHHH---HHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHH
Q ss_conf 4411777---778568999999998506664102014775314555
Q gi|254780285|r 134 GPMHVGH---CRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINT 176 (586)
Q Consensus 134 KplHVGH---lRsaiIGdsi~ril~~~G~~V~r~nyvgD~G~Q~~~ 176 (586)
++..||. .=++++...++.+|+.+||+|... .++.+..+..
T Consensus 7 ~~V~ig~~~w~~~~~~a~i~~~vLe~~Gy~Ve~~--~~~~~~~~~a 50 (298)
T 2rin_A 7 GTVRFSDVGWTDITATTATATTILEALGYETDVK--VLSVPVTYTS 50 (298)
T ss_dssp TEEEEECCSCHHHHHHHHHHHHHHHHHTCEEEEE--CCCHHHHHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHCCCCEEEE--ECCHHHHHHH
T ss_conf 9769974697669999999999999869924898--6870999999
No 73
>3do8_A Phosphopantetheine adenylyltransferase; protein with unknown function, structural genomics, MCSG, PSI-2, protein structure initiative; 1.60A {Archaeoglobus fulgidus}
Probab=29.27 E-value=14 Score=14.54 Aligned_cols=10 Identities=40% Similarity=0.800 Sum_probs=7.9
Q ss_pred CCCCCHHHHH
Q ss_conf 2441177777
Q gi|254780285|r 133 TGPMHVGHCR 142 (586)
Q Consensus 133 ~KplHVGHlR 142 (586)
-=|+|.||++
T Consensus 9 FD~~H~GH~~ 18 (148)
T 3do8_A 9 FEPLHEGHKK 18 (148)
T ss_dssp CSSCCHHHHH
T ss_pred CCCCCHHHHH
T ss_conf 3884889999
No 74
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=27.86 E-value=21 Score=13.22 Aligned_cols=42 Identities=26% Similarity=0.270 Sum_probs=27.6
Q ss_pred CCCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 6565541000223443224411777778568999999998506664102014
Q gi|254780285|r 116 LIGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYI 167 (586)
Q Consensus 116 ~~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~r~nyv 167 (586)
.++++++|- +.|.+=+ =+.+++..++-+||-+||+|.+..-+
T Consensus 3 ~p~~g~tv~--~~~~~wt--------e~~i~~ei~~~~Le~~Gy~V~~~~~~ 44 (309)
T 1r9l_A 3 LPGKGITVN--PVQSTIT--------EETFQTLLVSRALEKLGYTVNKPSEV 44 (309)
T ss_dssp CTTTTCEEC--EEECSCG--------GGHHHHHHHHHHHHHTTCEECCCEEC
T ss_pred CCCCCCEEE--EECCCCC--------HHHHHHHHHHHHHHHCCCCEEEECCC
T ss_conf 899998898--8417852--------89999999999999869964751478
No 75
>1coz_A Protein (glycerol-3-phosphate cytidylyltransferase); HET: CTP; 2.00A {Bacillus subtilis} SCOP: c.26.1.2 PDB: 1n1d_A*
Probab=27.82 E-value=15 Score=14.25 Aligned_cols=10 Identities=30% Similarity=0.534 Sum_probs=7.4
Q ss_pred CCCCCHHHHH
Q ss_conf 2441177777
Q gi|254780285|r 133 TGPMHVGHCR 142 (586)
Q Consensus 133 ~KplHVGHlR 142 (586)
-=++|.||++
T Consensus 10 FD~lH~GH~~ 19 (129)
T 1coz_A 10 FDLLHWGHIK 19 (129)
T ss_dssp CCSCCHHHHH
T ss_pred ECCCCHHHHH
T ss_conf 4879989999
No 76
>3k9w_A Phosphopantetheine adenylyltransferase; niaid, ssgcid, seattle structural genomics center for infectious disease, coenzyme A; HET: 4PS ADE PG4; 1.60A {Burkholderia pseudomallei 1710B} PDB: 3ikz_A*
Probab=27.24 E-value=16 Score=14.15 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=10.6
Q ss_pred CEECCCCCCCCCCCCCHHHHH
Q ss_conf 100022344322441177777
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCR 142 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlR 142 (586)
||-|=..|=| |+|.||+.
T Consensus 6 ~IaifgGsFd---P~H~GHl~ 23 (170)
T 3k9w_A 6 VVAVYPGTFD---PLTRGHED 23 (170)
T ss_dssp CEEEEEECCT---TCCHHHHH
T ss_pred EEEEECCCCC---CCCHHHHH
T ss_conf 8999585679---88899999
No 77
>1vlh_A Phosphopantetheine adenylyltransferase; TM0741, structural genomics, JCSG, protein structure initiative, PSI; HET: PNS; 2.20A {Thermotoga maritima} SCOP: c.26.1.3
Probab=26.54 E-value=16 Score=14.00 Aligned_cols=11 Identities=27% Similarity=0.673 Sum_probs=7.6
Q ss_pred CCCCCCHHHHH
Q ss_conf 22441177777
Q gi|254780285|r 132 PTGPMHVGHCR 142 (586)
Q Consensus 132 p~KplHVGHlR 142 (586)
.--|+|.||+.
T Consensus 20 sFdPiH~GHl~ 30 (173)
T 1vlh_A 20 SFDPITLGHVD 30 (173)
T ss_dssp CCTTCCHHHHH
T ss_pred CCCCCCHHHHH
T ss_conf 47877799999
No 78
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin, protein-protein complex, extended interface, armadillo repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus} SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Probab=26.14 E-value=21 Score=13.22 Aligned_cols=17 Identities=29% Similarity=0.389 Sum_probs=12.8
Q ss_pred EEECCCCCCHHHHHHHH
Q ss_conf 02014775314555678
Q gi|254780285|r 163 REYYINDAGAQINTLAL 179 (586)
Q Consensus 163 r~nyvgD~G~Q~~~li~ 179 (586)
--.|++|||..|-.|+-
T Consensus 127 ~~d~L~~wGPrF~~La~ 143 (151)
T 1i7w_B 127 DYDYLNEWGNRFKKLAD 143 (151)
T ss_dssp --CCTTTSCGGGHHHHH
T ss_pred CHHHHHHCCCCCHHHHH
T ss_conf 85788763803288999
No 79
>1wj5_A Hypothetical protein (riken cDNA 0610009H20); winged helix, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.4.5.59
Probab=25.79 E-value=23 Score=12.97 Aligned_cols=18 Identities=17% Similarity=0.488 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHCCCCCC
Q ss_conf 579999999997498511
Q gi|254780285|r 271 SPIRDIIDNLARQGYVYE 288 (586)
Q Consensus 271 ~~i~~~i~~l~~~g~~~e 288 (586)
...++++..|.++|++|.
T Consensus 78 siFKeAi~~Lqe~G~VFq 95 (120)
T 1wj5_A 78 RVFKNALQLLQEKGLVFQ 95 (120)
T ss_dssp HHHHHHHHHHHHHTSEEC
T ss_pred HHHHHHHHHHHHCCEEEE
T ss_conf 999999999997786884
No 80
>1ej2_A Nicotinamide mononucleotide adenylyltransferase; dinucleotide binding fold, structural genomics, PSI; HET: NAD; 1.90A {Methanothermobacterthermautotrophicus} SCOP: c.26.1.3 PDB: 1m8g_A* 1hyb_A* 1m8j_A* 1m8f_A* 1m8k_A*
Probab=24.94 E-value=18 Score=13.67 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=6.6
Q ss_pred CCCCHHHHHH
Q ss_conf 4411777778
Q gi|254780285|r 134 GPMHVGHCRC 143 (586)
Q Consensus 134 KplHVGHlRs 143 (586)
-|+|.||++-
T Consensus 13 dP~H~GH~~l 22 (181)
T 1ej2_A 13 QPFHRGHLQV 22 (181)
T ss_dssp TTCCHHHHHH
T ss_pred CCCCHHHHHH
T ss_conf 9899999999
No 81
>1kam_A Deamido-NAD(+), nicotinate-nucleotide adenylyltransferase; rossman fold; 2.10A {Bacillus subtilis} SCOP: c.26.1.3 PDB: 1kaq_A*
Probab=24.70 E-value=24 Score=12.84 Aligned_cols=37 Identities=22% Similarity=0.243 Sum_probs=25.2
Q ss_pred CCCCCCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 5655410002234432244117777785689999999985066641
Q gi|254780285|r 117 IGKGTKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVT 162 (586)
Q Consensus 117 ~~~~~kVvVE~sSpNp~KplHVGHlRsaiIGdsi~ril~~~G~~V~ 162 (586)
++.++||-|=.+|-|| .|.||+. -+.+.++.++.+++
T Consensus 3 ~~~~kkIaifgGSFdP---~H~GH~~------ii~~a~~~~~~~~v 39 (194)
T 1kam_A 3 PGGSKKIGIFGGTFDP---PHNGHLL------MANEVLYQAGLDEI 39 (194)
T ss_dssp ---CCEEEEEEECCSS---CCHHHHH------HHHHHHHHTTCSEE
T ss_pred CCCCCEEEEECCCCCC---CCHHHHH------HHHHHHHHCCCCEE
T ss_conf 8999779995647584---8799999------99999998599789
No 82
>3nbk_A Phosphopantetheine adenylyltransferase; PPAT, PHP; HET: PNS; 1.58A {Mycobacterium tuberculosis} PDB: 3nba_A* 3lcj_A* 1tfu_A
Probab=24.35 E-value=19 Score=13.54 Aligned_cols=22 Identities=18% Similarity=0.356 Sum_probs=13.9
Q ss_pred CCCCCEECCCCCCCCCCCCCHHHHH
Q ss_conf 6554100022344322441177777
Q gi|254780285|r 118 GKGTKVNIEFVSANPTGPMHVGHCR 142 (586)
Q Consensus 118 ~~~~kVvVE~sSpNp~KplHVGHlR 142 (586)
+.+.++-| |. =.--|+|.||++
T Consensus 18 ~~~mriai-~~--GsFdPiH~GHl~ 39 (177)
T 3nbk_A 18 GSHMTGAV-CP--GSFDPVTLGHVD 39 (177)
T ss_dssp --CCCEEE-EE--ECCTTCCHHHHH
T ss_pred CCCCEEEE-EC--CCCCCCCHHHHH
T ss_conf 99866999-68--677988789999
No 83
>2c1x_A UDP-glucose flavonoid 3-O glycosyltransferase; WINE, catalysis, glycosylation; HET: UDP B3P; 1.9A {Vitis vinifera} SCOP: c.87.1.10 PDB: 2c1z_A* 2c9z_A*
Probab=23.33 E-value=25 Score=12.66 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=9.3
Q ss_pred CCCCCCCCHHHHHHHHHHC
Q ss_conf 0127411048999888828
Q gi|254780285|r 40 CAHGHLSTNAAMILSRPLG 58 (586)
Q Consensus 40 ~~~GD~~~n~a~~lAK~~k 58 (586)
|..|+++ +.+.|||.|.
T Consensus 16 P~~gHv~--P~l~La~~L~ 32 (456)
T 2c1x_A 16 PFSTHAA--PLLAVVRRLA 32 (456)
T ss_dssp CSSSSHH--HHHHHHHHHH
T ss_pred HHHHHHH--HHHHHHHHHH
T ss_conf 3575899--9999999999
No 84
>3igz_B Cofactor-independent phosphoglycerate mutase; glycolysis, cobalt, isomerase; HET: 3PG 2PG; 1.90A {Leishmania mexicana} PDB: 3igy_B*
Probab=22.53 E-value=26 Score=12.55 Aligned_cols=18 Identities=22% Similarity=0.617 Sum_probs=14.6
Q ss_pred HHHHHHHHCCCCCCCCCC
Q ss_conf 999987315879854459
Q gi|254780285|r 569 IINSGLNIIGVESPNEMS 586 (586)
Q Consensus 569 vL~~~L~LLGI~~perM~ 586 (586)
+--+.|.||||+.|+.|.
T Consensus 528 IAPTiL~llGl~~P~em~ 545 (561)
T 3igz_B 528 VTATFINLLGFEAPEDYE 545 (561)
T ss_dssp HHHHHHHHHTBCCCTTSC
T ss_pred HHHHHHHHCCCCCCCCCC
T ss_conf 999999983989870128
No 85
>2px6_A Thioesterase domain; thioesaterse domain, orlistat, fatty acid synthase, drug complex, tetrahydrolipstatin, transferase; HET: DH9; 2.30A {Homo sapiens} PDB: 1xkt_A
Probab=22.20 E-value=27 Score=12.51 Aligned_cols=34 Identities=18% Similarity=0.178 Sum_probs=28.7
Q ss_pred CCCC-HHHHHHHHHHHHHHHHHHHCCCCCCEEECC
Q ss_conf 4411-777778568999999998506664102014
Q gi|254780285|r 134 GPMH-VGHCRCAVVGDTLASLMAFSGYEVTREYYI 167 (586)
Q Consensus 134 KplH-VGHlRsaiIGdsi~ril~~~G~~V~r~nyv 167 (586)
+|+| +||--..+|.--+++.|+..|..|....-+
T Consensus 105 gp~~L~G~S~GG~lA~E~A~~L~~~G~~v~~v~~l 139 (316)
T 2px6_A 105 GPYRVAGYSYGACVAFEMCSQLQAQQSPAPTHNSL 139 (316)
T ss_dssp CCCEEEEETHHHHHHHHHHHHHHHHC---CCCCEE
T ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCCCEEEEE
T ss_conf 99899973566399999999999769976527999
No 86
>2v78_A Fructokinase; transferase, PFKB family carbohydrate kinase, 2- keto-3-deoxygluconate kinase; 2.00A {Sulfolobus solfataricus} PDB: 2var_A*
Probab=21.26 E-value=12 Score=14.94 Aligned_cols=58 Identities=14% Similarity=0.097 Sum_probs=36.1
Q ss_pred CEECCCCCCCCCCCCCHHHHHHHHHHHH--HHHHHHHCCCCCCEEECCCCCCHHHHHHHHHH
Q ss_conf 1000223443224411777778568999--99999850666410201477531455567898
Q gi|254780285|r 122 KVNIEFVSANPTGPMHVGHCRCAVVGDT--LASLMAFSGYEVTREYYINDAGAQINTLALSV 181 (586)
Q Consensus 122 kVvVE~sSpNp~KplHVGHlRsaiIGds--i~ril~~~G~~V~r~nyvgD~G~Q~~~li~~~ 181 (586)
-++||++++.|.+...+.+.....=|.+ +++.|..+|++|.=.-.||+= .+|..+...
T Consensus 9 ~~~vD~~~~~~~~~~~~~~~~~~~GG~~~Nva~~l~~lG~~v~~i~~vG~D--~~g~~i~~~ 68 (313)
T 2v78_A 9 EPLIQFNSFNPGPLRFVNYFEKHVAGSELNFCIAVVRNHLSCSLIARVGND--EFGKNIIEY 68 (313)
T ss_dssp CCEEEEEESSSSCGGGCCEEEEEEECHHHHHHHHHHHTTCCEEEEEEEESS--HHHHHHHHH
T ss_pred CCEEEEECCCCCCEEECCEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCC--HHHHHHHHH
T ss_conf 505898478988624436578846867999999999779987999994698--899999999
No 87
>3hl4_A Choline-phosphate cytidylyltransferase A; rossmann fold, phospholipid synthesis, phosphatidylcholine, phosphocholine, CTP, CDP-choline; HET: CDC; 2.20A {Rattus norvegicus}
Probab=20.18 E-value=26 Score=12.60 Aligned_cols=12 Identities=33% Similarity=0.340 Sum_probs=5.5
Q ss_pred CHHHHHHHHHHH
Q ss_conf 613689999999
Q gi|254780285|r 359 DHSGYVKRLEAV 370 (586)
Q Consensus 359 ~Q~~h~~~v~~~ 370 (586)
=|.+|++.+..+
T Consensus 88 fH~GHi~lL~~A 99 (236)
T 3hl4_A 88 FHSGHARALMQA 99 (236)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
T ss_conf 898999999999
Done!