RPSBLAST alignment of GI: 254780285 and protein with PDBid: 1iq0

 Score =  336 bits (861), Expect = 1e-92
 Identities = 126/627 (20%), Positives = 226/627 (36%), Gaps = 88/627 (14%)

Query: 11  LKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLDPLTIAELIVA 70
           L+  L+E   +   E  +  R+ + R      G         L++ L   P  IA+ +  
Sbjct: 2   LRRALEEAIAQALKEMGVPVRLKVARAPKDKPGDYGVPL-FALAKELRKPPQAIAQELKD 60

Query: 71  RIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKGTKVNIEFVSA 130
           R+ +   V+     G G++N  L    L   L   +     + R    +   V +E  S 
Sbjct: 61  RLPLPEFVEEAVPVG-GYLNFRLRTEAL---LREALRPKAPFPR----RPGVVLVEHTSV 112

Query: 131 NPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALSVFWRYQQALY 190
           NP   +HVGH R   +GD +A ++A++G EV    YI+D G Q      ++         
Sbjct: 113 NPNKELHVGHLRNIALGDAIARILAYAGREVLVLNYIDDTGRQAAETLFALRHYGLTWDG 172

Query: 191 NNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLK 250
               D   G       +    E       E+L+  E   L       V  ++      + 
Sbjct: 173 KEKYDHFAGRAYVRLHQDPEYERLQPAIEEVLHALERGEL----REEVNRILLAQMATMH 228

Query: 251 ALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQKCDMDRKQLL 310
           ALN ++D+ + E D  R     ++  +  L +  +V+                       
Sbjct: 229 ALNARYDLLVWESDIVRAGL--LQKALALLEQSPHVFRPREGKYAGALVMDASPV----- 281

Query: 311 FRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCK-----------YERGFDNMIYVMGSD 359
                  +D    LL+S+G+ TY+A D+A+   K           YE  +   +     +
Sbjct: 282 ---IPGLEDPFFVLLRSNGTATYYAKDIAFQFWKMGILEGLRFRPYENPYYPGLRTSAPE 338

Query: 360 HSGYVKRLEAVAAAVSEKKAQINVL----------------LCELVRLYRDGMPIKMSKR 403
              Y  + E     V  +++    L                   L          +MS R
Sbjct: 339 GEAYTPKAEETINVVDVRQSHPQALVRAALALAGYPALAEKAHHLAYETVLLEGRQMSGR 398

Query: 404 AGDFITLRHVVDE-------------------------VGSDSVRFMMLWRKNSELLDFD 438
            G  +++  V++E                         V   ++RF M+  +  + +DF 
Sbjct: 399 KGLAVSVDEVLEEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFR 458

Query: 439 FCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLFPRNVIPQESEFDTSELQL 498
           + +      +    YVQYA+AR  SI R+A +               P  S+    E  L
Sbjct: 459 YQEALSFEGDTG-PYVQYAHARAHSILRKAGEWG------------APDLSQATPYERAL 505

Query: 499 IVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGRENPRLRFVQANNRKLTMM 558
            + L ++   +  A   + P+ LA YL DLA+ ++ +++          V      L  +
Sbjct: 506 ALDLLDFEEAVLEAAEERTPHVLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLREL 565

Query: 559 RLQLVHAVASIINSGLNIIGVESPNEM 585
           RL LV ++   + +GL+++G+ +P  M
Sbjct: 566 RLSLVQSLQRTLATGLDLLGIPAPEVM 592