BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase
[Candidatus Liberibacter asiaticus str. psy62]
         (586 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780285|ref|YP_003064698.1| arginyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 586

 Score = 1214 bits (3141), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 586/586 (100%), Positives = 586/586 (100%)

Query: 1   MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60
           MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD
Sbjct: 1   MYLFADFSSRLKNYLKEIDCKIKVEKKILDRIVIERPRDCAHGHLSTNAAMILSRPLGLD 60

Query: 61  PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG 120
           PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG
Sbjct: 61  PLTIAELIVARIKIDPDVDSVFIAGKGFINLYLSPSYLRKILSSIVVSGIEYGRNLIGKG 120

Query: 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS 180
           TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS
Sbjct: 121 TKVNIEFVSANPTGPMHVGHCRCAVVGDTLASLMAFSGYEVTREYYINDAGAQINTLALS 180

Query: 181 VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA 240
           VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA
Sbjct: 181 VFWRYQQALYNNDSDLPEGYYPGVYLKHVGKELADKYSSELLNFPEEKWLPIVKDYSVQA 240

Query: 241 MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ 300
           MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ
Sbjct: 241 MMKIIRDDLKALNIQHDIFISEDDFHRGDPSPIRDIIDNLARQGYVYEGILPPPKSKTTQ 300

Query: 301 KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH 360
           KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH
Sbjct: 301 KCDMDRKQLLFRSTMVGDDVDRPLLKSDGSYTYFAADLAYFKCKYERGFDNMIYVMGSDH 360

Query: 361 SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420
           SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD
Sbjct: 361 SGYVKRLEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFITLRHVVDEVGSD 420

Query: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480
           SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF
Sbjct: 421 SVRFMMLWRKNSELLDFDFCKVKEQSKENPVFYVQYAYARCRSIFRQAKDIFPDLDFDLF 480

Query: 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540
           PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR
Sbjct: 481 PRNVIPQESEFDTSELQLIVHLAEYPRVIENATIAQEPYKLAFYLYDLASVFHGHWSHGR 540

Query: 541 ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS 586
           ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS
Sbjct: 541 ENPRLRFVQANNRKLTMMRLQLVHAVASIINSGLNIIGVESPNEMS 586


>gi|254780802|ref|YP_003065215.1| leucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 869

 Score = 37.7 bits (86), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 15/30 (50%), Positives = 20/30 (66%)

Query: 132 PTGPMHVGHCRCAVVGDTLASLMAFSGYEV 161
           P+G +H+GH R  V+GD +A  M  SGY V
Sbjct: 45  PSGNIHMGHLRNYVIGDVVARFMRASGYSV 74


>gi|254780289|ref|YP_003064702.1| RNA polymerase sigma factor RpoD [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 682

 Score = 33.5 bits (75), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 3/65 (4%)

Query: 199 GYYPGVYL-KHVGKELADKYSSELLNFPEEKWLPIVKDYSVQAMMKIIRDDLKALNIQHD 257
           G    V+L +H G+EL   + S   +FPE +W   V    V +++K IR+++K+++++  
Sbjct: 364 GIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNFVA-CEVDSILK-IRNEIKSISVETG 421

Query: 258 IFISE 262
           I ISE
Sbjct: 422 ISISE 426


>gi|254780933|ref|YP_003065346.1| valyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 947

 Score = 29.3 bits (64), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 391 LYRDGMPIKMSKRAGDFITLRHVVDEVGSDSVRF 424
           L RD    KMSK  G+ +    V+D+ G+D++RF
Sbjct: 584 LVRDKNGQKMSKSKGNVVDPIDVIDQYGADALRF 617


>gi|254780445|ref|YP_003064858.1| isoleucyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 963

 Score = 28.9 bits (63), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 41/87 (47%), Gaps = 11/87 (12%)

Query: 353 IYVMGSD-HSGYVKR--LEAVAAAVSEKKAQINVLLCELVRLYRDGMPIKMSKRAGDFIT 409
           +Y+ GSD H G+ +   LE+ A   S        L+     +  +G   KMSK  G+ + 
Sbjct: 589 VYLEGSDQHRGWFQHSLLESCATRGS---TPFTSLITHGFSVDENGE--KMSKSKGNVVF 643

Query: 410 LRHVVDEVGSDSVRFMMLWRKNSELLD 436
              ++ E G+D +R+   W  NS+  D
Sbjct: 644 PEEIISESGADVLRY---WAVNSDYHD 667


>gi|254780573|ref|YP_003064986.1| cysteinyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 461

 Score = 25.8 bits (55), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 7/53 (13%)

Query: 399 KMSKRAGDFITLRHVVD--EVGSDS-----VRFMMLWRKNSELLDFDFCKVKE 444
           KMSK  G+FIT+  +++  + G  S     +R  ML     E +DF   ++ E
Sbjct: 277 KMSKSNGNFITINELLETKKFGGRSWPAPVIRLAMLMTHYREPIDFTVQRLTE 329


>gi|254780333|ref|YP_003064746.1| alanine racemase [Candidatus Liberibacter asiaticus str. psy62]
          Length = 370

 Score = 25.8 bits (55), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 10/16 (62%), Positives = 12/16 (75%)

Query: 80  SVFIAGKGFINLYLSP 95
           SVF+ GKGFI  Y+ P
Sbjct: 293 SVFLGGKGFIKGYMVP 308


>gi|255764494|ref|YP_003065050.2| molecular chaperone DnaK [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 652

 Score = 24.6 bits (52), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 121 TKVNIEFVSANPTGPMHV 138
           T++N+ F+SAN  G  H+
Sbjct: 274 TEINLPFISANSAGAQHL 291


>gi|254780172|ref|YP_003064585.1| general L-amino acid transport system permease protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 386

 Score = 24.6 bits (52), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 12/30 (40%), Positives = 19/30 (63%)

Query: 81  VFIAGKGFINLYLSPSYLRKILSSIVVSGI 110
           VF+ G   +   L PS+ RK L+SI++ G+
Sbjct: 122 VFLTGSILLTPMLIPSFPRKFLNSILLFGL 151


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.322    0.139    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 379,199
Number of Sequences: 1233
Number of extensions: 15949
Number of successful extensions: 42
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 14
length of query: 586
length of database: 328,796
effective HSP length: 79
effective length of query: 507
effective length of database: 231,389
effective search space: 117314223
effective search space used: 117314223
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 41 (20.4 bits)