Query gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 410 No_of_seqs 191 out of 1457 Neff 8.0 Searched_HMMs 23785 Date Tue May 24 15:14:40 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780286.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 2dqb_A Deoxyguanosinetriphosph 100.0 0 0 909.5 25.9 366 8-396 10-375 (376) 2 3bg2_A DGTP triphosphohydrolas 100.0 0 0 836.2 22.7 370 20-399 12-442 (444) 3 2pgs_A Putative deoxyguanosine 100.0 0 0 831.5 17.3 378 12-401 4-444 (451) 4 2hek_A Hypothetical protein; p 100.0 3.1E-35 1.3E-39 278.6 1.7 108 39-146 14-124 (371) 5 3irh_A HD domain protein; phos 99.8 8.8E-19 3.7E-23 156.9 13.4 101 34-146 42-166 (480) 6 2q14_A Phosphohydrolase; BT420 99.7 2.4E-16 1E-20 139.0 11.7 93 45-147 25-131 (410) 7 2o08_A BH1327 protein; putativ 98.9 2.9E-09 1.2E-13 86.6 6.1 122 59-215 4-131 (188) 8 2ogi_A Hypothetical protein SA 98.3 5.5E-05 2.3E-09 54.9 15.1 105 72-215 25-139 (196) 9 3ccg_A HD superfamily hydrolas 98.2 2.5E-05 1E-09 57.5 11.5 106 73-216 19-134 (190) 10 2pq7_A Predicted HD superfamil 97.7 9.5E-05 4E-09 53.2 6.8 99 74-214 34-134 (220) 11 3djb_A Hydrolase, HD family; a 97.6 6.6E-05 2.8E-09 54.4 5.5 51 68-118 20-70 (223) 12 3dto_A BH2835 protein; all alp 97.6 0.00014 5.8E-09 52.0 7.2 46 73-118 25-70 (223) 13 3gw7_A Uncharacterized protein 97.6 7.6E-05 3.2E-09 53.9 4.9 45 73-117 25-69 (239) 14 3b57_A LIN1889 protein; Q92AN1 97.3 0.00047 2E-08 48.1 6.4 46 73-118 25-70 (209) 15 2qgs_A Protein Se1688; alpha-h 97.3 0.00067 2.8E-08 46.9 6.7 50 69-118 21-71 (225) 16 2pjq_A Uncharacterized protein 97.0 0.0014 5.9E-08 44.6 6.5 46 68-113 25-70 (231) 17 3m1t_A Putative phosphohydrola 96.7 0.00079 3.3E-08 46.4 2.8 131 68-221 100-231 (275) 18 3hc1_A Uncharacterized HDOD do 96.4 0.0015 6.1E-08 44.4 2.9 135 63-217 107-243 (305) 19 3mem_A Putative signal transdu 94.6 0.061 2.6E-06 32.5 5.7 68 40-116 25-94 (457) 20 3dyn_A High affinity CGMP-spec 94.2 0.028 1.2E-06 34.9 3.2 73 70-143 73-158 (329) 21 3ljx_A MMOQ response regulator 94.0 0.036 1.5E-06 34.2 3.3 84 75-171 110-194 (288) 22 3kq5_A Hypothetical cytosolic 93.7 0.0048 2E-07 40.6 -1.5 71 36-111 43-118 (393) 23 1tbf_A CGMP-specific 3',5'-cyc 92.8 0.087 3.6E-06 31.3 3.7 73 70-143 99-184 (347) 24 1f0j_A PDE4B, phosphodiesteras 92.0 0.07 2.9E-06 32.0 2.5 44 70-114 81-131 (377) 25 3bjc_A CGMP-specific 3',5'-cyc 91.8 0.15 6.2E-06 29.6 3.9 20 384-403 824-843 (878) 26 3itu_A CGMP-dependent 3',5'-cy 91.8 0.1 4.2E-06 30.9 3.0 44 70-114 80-130 (345) 27 3ibj_A CGMP-dependent 3',5'-cy 91.6 0.13 5.5E-06 30.0 3.5 24 382-405 648-671 (691) 28 3hr1_A CAMP and CAMP-inhibited 91.5 0.17 7.2E-06 29.1 4.0 47 69-118 108-159 (380) 29 2r8q_A Class I phosphodiestera 91.3 0.13 5.3E-06 30.1 3.1 72 69-143 97-186 (359) 30 3ecm_A High affinity CAMP-spec 91.2 0.047 2E-06 33.3 0.8 71 70-143 73-158 (338) 31 1y2k_A DPDE3, PDE43, CAMP-spec 91.1 0.1 4.4E-06 30.7 2.5 45 70-115 94-145 (349) 32 1zkl_A HCP1, TM22, high-affini 90.8 0.051 2.2E-06 33.0 0.8 70 70-142 81-165 (353) 33 1taz_A Calcium/calmodulin-depe 90.4 0.19 8.2E-06 28.7 3.4 151 70-229 80-245 (365) 34 3g4g_A DPDE3, PDE43, CAMP-spec 90.2 0.15 6.5E-06 29.5 2.8 42 71-113 161-209 (421) 35 2cqz_A 177AA long hypothetical 90.1 0.36 1.5E-05 26.7 4.6 37 73-109 32-73 (177) 36 1xx7_A Oxetanocin-like protein 89.7 0.4 1.7E-05 26.4 4.6 37 73-109 37-78 (184) 37 2our_A CAMP and CAMP-inhibited 89.4 0.19 8.2E-06 28.7 2.8 51 68-119 76-131 (331) 38 3mzo_A LIN2634 protein; HD-dom 89.2 0.53 2.2E-05 25.5 4.9 42 68-109 25-71 (216) 39 3i7a_A Putative metal-dependen 88.2 1.3 5.4E-05 22.7 12.3 114 74-218 118-239 (281) 40 2paq_A 5'-deoxynucleotidase YF 88.0 0.51 2.2E-05 25.6 4.1 38 72-109 30-73 (201) 41 3kh1_A Predicted metal-depende 86.7 0.53 2.2E-05 25.5 3.6 37 73-109 40-78 (200) 42 3hi0_A Putative exopolyphospha 84.9 0.6 2.5E-05 25.1 3.2 22 211-232 289-310 (508) 43 1u6z_A Exopolyphosphatase; alp 82.6 1.4 5.9E-05 22.4 4.3 20 211-230 287-306 (513) 44 1ynb_A Hypothetical protein AF 81.3 2.1 8.8E-05 21.1 4.8 38 72-109 37-77 (173) 45 1so2_A CGMP-inhibited 3',5'-cy 80.8 0.39 1.7E-05 26.5 0.9 21 69-90 81-101 (420) 46 1vj7_A Bifunctional RELA/SPOT; 79.7 1.6 6.6E-05 22.0 3.7 57 43-109 24-80 (393) 47 3m5f_A Metal dependent phospho 77.1 3 0.00013 19.9 4.5 90 73-171 16-127 (244) 48 1vqr_A Hypothetical protein CJ 70.8 1.9 8.1E-05 21.4 2.3 42 71-112 122-164 (297) 49 3nr1_A HD domain-containing pr 68.3 3.6 0.00015 19.4 3.2 56 45-108 5-62 (178) 50 3nqw_A CG11900; stringent resp 67.0 2.9 0.00012 20.0 2.5 56 46-108 8-64 (179) 51 2ar0_A M.ecoki, type I restric 47.6 3.8 0.00016 19.2 0.4 13 128-140 214-226 (541) 52 2zxq_A Endo-alpha-N-acetylgala 44.0 3.4 0.00014 19.5 -0.3 22 105-126 362-388 (1376) 53 2gz4_A Hypothetical protein AT 43.9 13 0.00054 15.3 3.1 76 39-131 26-102 (207) 54 2rhk_A NS1, NS1A, non-structur 42.6 3.1 0.00013 19.8 -0.7 33 114-146 85-117 (140) 55 3l4q_A NS1, NS1A, non-structur 40.7 4.2 0.00018 18.8 -0.2 32 114-145 102-133 (164) 56 3lkd_A Type I restriction-modi 40.2 5.7 0.00024 17.9 0.4 13 129-141 252-264 (542) 57 3d6r_B NS1, NS1A, non-structur 38.7 4.7 0.0002 18.5 -0.2 32 114-145 96-127 (158) 58 1ufb_A TT1696 protein; structu 37.0 12 0.00049 15.6 1.5 24 99-124 42-65 (127) 59 3ecq_A Protein SPR0328, endo-a 36.8 5.2 0.00022 18.2 -0.3 16 105-120 620-635 (1531) 60 2ih2_A Modification methylase 34.4 8.1 0.00034 16.8 0.4 21 50-70 55-75 (421) 61 2kvi_A Nuclear polyadenylated 31.0 17 0.00071 14.4 1.6 23 108-130 15-37 (96) 62 1lgh_B LH II, B800/850, light 27.7 23 0.00095 13.5 1.9 16 380-395 5-20 (45) 63 2huo_A Inositol oxygenase; pro 24.9 25 0.001 13.2 1.5 21 93-113 114-134 (289) 64 3eu6_A NS1, nonstructural prot 24.2 9.6 0.0004 16.2 -0.7 11 153-163 51-61 (215) 65 3a62_A Ribosomal protein S6 ki 22.3 28 0.0012 12.8 3.9 11 223-233 203-213 (327) 66 1o3u_A Conserved hypothetical 21.7 29 0.0012 12.7 2.9 21 103-124 50-70 (135) 67 1wf1_A RNA-binding protein RAL 21.1 29 0.0012 12.6 2.6 23 108-130 32-54 (110) 68 1dw9_A Cyanate lyase; cyanate 21.1 23 0.00095 13.5 0.7 35 72-106 11-50 (156) No 1 >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} Probab=100.00 E-value=0 Score=909.52 Aligned_cols=366 Identities=40% Similarity=0.610 Sum_probs=333.6 Q ss_pred CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 67864658543870333773477888999984340000110273462327574787169998706620888999999999 Q gi|254780286|r 8 GFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARS 87 (410) Q Consensus 8 ~~~~~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rs 87 (410) .++.+.++|||+++.+++||.+||+++++||||+|||||||||+||||||+||||||+.+|||||||||||||||||||| T Consensus 10 ~~~~~~l~~~a~~~~~~~~R~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLTHslEVa~i~rs 89 (376) T 2dqb_A 10 ELEASRLAPYAQKARDTRGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRS 89 (376) T ss_dssp HHHHHHSCTTSCCGGGCCCCSSCCCCCSSCCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHH T ss_pred HHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH T ss_conf 88875248854696020388878999999981431404887278776145688263079998537767899999999999 Q ss_pred HHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC Q ss_conf 99883999889999998886289988654789999997312554577657788754321146701000247888776347 Q gi|254780286|r 88 LARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGH 167 (410) Q Consensus 88 i~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKy 167 (410) ||+.+|+|++||||||||||||||||||+||+||++||+++||||||||||||||+||.+++.++||||||+||+|++|| T Consensus 90 i~~~l~~~~~lvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQslRilt~Le~~~~~~~GlnLT~~tl~~i~K~ 169 (376) T 2dqb_A 90 IARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALMQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATH 169 (376) T ss_dssp HHHHTTCCHHHHHHHHHHTTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHS T ss_pred HHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC T ss_conf 99997547333788886034689987506999999987605898545367787564104688989864647665455403 Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH Q ss_conf 57788644455210014577667640223133667321798656554432120798998753067763001566888999 Q gi|254780286|r 168 NGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIAS 247 (410) Q Consensus 168 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~ 247 (410) ||+..+... ......+++|||||||||||||++||||||+++|+|+++++.+++++.....+ T Consensus 170 ~~~~~~~~~------------------~~~~~~~tlEaqIme~ADDIAY~~hDlEDai~~gli~~~~l~e~~l~~~~~~~ 231 (376) T 2dqb_A 170 EAAYSPGFK------------------PLYEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALE 231 (376) T ss_dssp CC-----------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCGGGGGGSHHHHHHHHH T ss_pred CCCCCCCHH------------------HHHHCCCCHHHHHHCCHHCCHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH T ss_conf 210042034------------------55533587789985541238553558888986699889998645899999998 Q ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC Q ss_conf 88654889989999999999999999978886787787515454676442685211147035799999999999985178 Q gi|254780286|r 248 LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRH 327 (410) Q Consensus 248 ~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~ 327 (410) ......... ......+++.+++.+|.+++..+.+++........++++..+..++.+|+++....+.+|+|++++||+| T Consensus 232 ~~~~~~~~~-~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~i~~~~~~l~~~s~~~~~~~~~lk~fl~~~vy~~ 310 (376) T 2dqb_A 232 EGLDLLRLP-ELDRRVLVRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLMERFYRH 310 (376) T ss_dssp TTCCTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHTTTS T ss_pred HHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC T ss_conf 744010231-5677899999874799989999999999821302899972520444311100000347899999999489 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHH Q ss_conf 999999999999999999999878884574106776602580000103020006733699999999981 Q gi|254780286|r 328 PSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILF 396 (410) Q Consensus 328 ~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~ 396 (410) +.|+.++.+|++||..||+.|+++|+.||..|+..+ ++..+.|+||||||||||+||+++|++|| T Consensus 311 ~~v~~~e~~g~~iI~~Lf~~f~~~p~llp~~~~~~~----~~~~~~R~V~DYIAGMTD~yA~~ly~~L~ 375 (376) T 2dqb_A 311 PEVLRERRKAEAVLEGLFAAYTRYPELLPREVQAKI----PEEGLERAVCDYIAGMTDRFALEAYRRLS 375 (376) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHTTH----HHHCHHHHHHHHHHTCCHHHHHHHHHHTC T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHC----CCCCHHHEEHHHHCCCHHHHHHHHHHHCC T ss_conf 999999999999999999999859985999999646----66665623021021631779999999709 No 2 >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} Probab=100.00 E-value=0 Score=836.18 Aligned_cols=370 Identities=24% Similarity=0.317 Sum_probs=286.9 Q ss_pred CHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC---- Q ss_conf 7033377347788899998434000011027346232757478716999870662088899999999999883999---- Q gi|254780286|r 20 DPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRID---- 95 (410) Q Consensus 20 ~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~---- 95 (410) +...+.+|..++ ++++||||||||||||||+||||||+||||||+.+||||||||||||||||||||||+.|+++ T Consensus 12 R~~~~~~~~~~~-~~~~R~~F~rDrdRIi~S~aFRRLq~KTQVf~~~~~D~~rtRLTHSlEVaqiaRsi~~~l~~~l~~~ 90 (444) T 3bg2_A 12 RQGDTAKRLRIE-QDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEK 90 (444) T ss_dssp CTTCSSCCCGGG-CCGGGCHHHHHHHHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_pred HCCCCCCCCCCC-CCCCCCCHHHCCCHHHCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 045655788888-8998980530301886689776255788250489998772830599999999999999999999874 Q ss_pred ---------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC-----------------CCCCCCCHHHHHHH Q ss_conf ---------------8899999988862899886547899999973125-----------------54577657788754 Q gi|254780286|r 96 ---------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-----------------GFDHNIQSFRIVTE 143 (410) Q Consensus 96 ---------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~-----------------gFegNaQ~~Rilt~ 143 (410) +|||||||||||||||||||+||+||++||+++| |||||||||||||+ T Consensus 91 ~~~~~~~~~~~~~~~~~lvea~~LaHDiGhpPFGH~GE~aL~~~~~~~~~~~~~~~~~~~~~~d~~gFegNaQslRIlt~ 170 (444) T 3bg2_A 91 YPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQ 170 (444) T ss_dssp STHHHHTTCCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHTSGGGGGGGGSCHHHHHHHHTCCHHHHHHHHHHC T ss_pred CCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH T ss_conf 80033312344431588999863035458898630059999999984278411101019988763122551788899876 Q ss_pred HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC------CCCCCH---HHHHHHHHHHCC-------CCCCCCCHHHHH Q ss_conf 3211467010002478887763475778864445------521001---457766764022-------313366732179 Q gi|254780286|r 144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLD------KPRIIP---RIFSDYYHIHGL-------SLANFASLEGQV 207 (410) Q Consensus 144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~------~~~~~~---~~~~~~~~~~~~-------~~~~~~slEa~i 207 (410) ++ +..++||||||+||+||+||||++.+.... +++.+. ..+.+.....++ .....+++|||| T Consensus 171 l~--~~~~~GLNLT~~tL~gilKyp~~~~~~~~~~~~~~~k~g~~~~e~~~~~~i~~~~~l~~~~~~~~~~~~r~~eaqI 248 (444) T 3bg2_A 171 SK--PGAQGGLRLSYATLGAFMKYPKESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYL 248 (444) T ss_dssp CB--TTBTTTTCCCHHHHHHHCSSCBCCC-----------CCSCCGGGHHHHHHHHHHHTCCBC----CCBBCCCTTHHH T ss_pred HC--CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH T ss_conf 22--3777887578999999995575435677654445456563443789999998763132035311235578908999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 865655443212079899875306776300156688899988654889-9899999999999999999788867877875 Q gi|254780286|r 208 AAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHL-DDKRLVHELVRRQITAMVEDVITVSQKRIAH 286 (410) Q Consensus 208 veaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~ 286 (410) |+|||||||++||||||+++|+|+++++.+..............+... ........+++..|+.+|.+++..+.++... T Consensus 249 me~ADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~I~~lI~~~i~~~~~~~~~ 328 (444) T 3bg2_A 249 VEAADDICYTIIDFEDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTFMKYEEE 328 (444) T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSCC-------------------CCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH T ss_pred HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH T ss_conf 99887766515039989753888799999999999866555666533246999999999999999999999999996788 Q ss_pred HCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHH--- Q ss_conf 15454676442685211147035799999999999985178999999999999999999999878884574106776--- Q gi|254780286|r 287 LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEY--- 363 (410) Q Consensus 287 ~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~--- 363 (410) .... ..+..++..+ +....++.||+|++++||++++|+.++.+|++||.+||+.|++.+...+..+.... T Consensus 329 i~~~------~~~~~Li~~~-~~~~~~~~Lk~f~~~~vy~~~~v~~~e~~g~~iI~~Lf~~~~~~~~~~~~~~~~~~~~~ 401 (444) T 3bg2_A 329 ILAG------TFDQSLIDKS-NYQAQITDIINLSIERIYNSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQL 401 (444) T ss_dssp HHHT------CCCSCTGGGC-TTHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH T ss_pred HHCC------CCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 7347------6555533674-89999999999999984388999999999999999999999987763726699999986 Q ss_pred -----HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCCC Q ss_conf -----602580000103020006733699999999981889 Q gi|254780286|r 364 -----ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYI 399 (410) Q Consensus 364 -----~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~~ 399 (410) ....+.+.++|+||||||||||+||+++|++|+|+. T Consensus 402 ~~~~~~~~~~~y~~~r~V~DYIAGMTD~yA~~~y~~L~Gi~ 442 (444) T 3bg2_A 402 LAPNDHSEKSLYENLIQICAEVSTMTDGKALRNYKKIKGLD 442 (444) T ss_dssp HC------CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTTC- T ss_pred CCCCCCCCCCHHHHHCCHHEECCCCHHHHHHHHHHHHHCCC T ss_conf 06542000373653340110523764989999999816878 No 3 >2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} Probab=100.00 E-value=0 Score=831.48 Aligned_cols=378 Identities=25% Similarity=0.312 Sum_probs=286.9 Q ss_pred CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH Q ss_conf 46585438703337734778889999843400001102734623275747871699987066208889999999999988 Q gi|254780286|r 12 QKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARA 91 (410) Q Consensus 12 ~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~ 91 (410) +|+-- .+.+..||.++++++++||||||||||||||+||||||+||||||+.+||||||||||||||||||||||+. T Consensus 4 ~w~~l---l~~~r~~~~~~~~~~~~R~~f~rDr~RIi~S~afRRLq~KTQVf~~~~~d~~rtRLTHslEVaqi~rsia~~ 80 (451) T 2pgs_A 4 DWQTL---LNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMR 80 (451) T ss_dssp CTTTT---TCCCBC-------------CHHHHHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHH T ss_pred CHHHH---CCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 75546---283114888788779999806414008865898771446871541799987817067999999999999999 Q ss_pred CCCC--------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC-----------------CCCCCCCHHHH Q ss_conf 3999--------------8899999988862899886547899999973125-----------------54577657788 Q gi|254780286|r 92 LRID--------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-----------------GFDHNIQSFRI 140 (410) Q Consensus 92 l~~~--------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~-----------------gFegNaQ~~Ri 140 (410) |+++ ++||||||||||||||||||+||+||++||+++| ||||||||||| T Consensus 81 l~~~~~~~~~~~~~~~~~~~lvea~~L~HDiGHpPFGH~GE~aL~~~~~~~g~~~~~~~~~~~~~~d~~gFe~N~QslRI 160 (451) T 2pgs_A 81 VGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQAAGRGWLDAMSETERNDFLNFEGNAQGFRV 160 (451) T ss_dssp HHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHTTTTTTTSCHHHHHHHHTCCHHHHHHHH T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH T ss_conf 99888762611135410778999999863279998662099999999885468114444216664023565743767688 Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-----CCCCCCHHHHHHHHHH---HCC----CCCCCCCHHHHHH Q ss_conf 754321146701000247888776347577886444-----5521001457766764---022----3133667321798 Q gi|254780286|r 141 VTELECSYADFDGINLTWETLEGLIGHNGPILPQDL-----DKPRIIPRIFSDYYHI---HGL----SLANFASLEGQVA 208 (410) Q Consensus 141 lt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~----~~~~~~slEa~iv 208 (410) ||+||+++.+ +|||||++||+||+||||+....+. .+++.+......+.+. ..+ .....+++||||| T Consensus 161 vt~LE~~~~~-~GLNLT~~tL~gilKyp~~~~~~~~~~~~~~k~g~~~~e~~~~~~i~~~~~~~~~~~~~~~~~~ea~Im 239 (451) T 2pgs_A 161 LTQLEYHQFD-GGTRLTYATLGTYLKYPWTARHADSLGYKKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLM 239 (451) T ss_dssp HHTTSSBTTT-TBTCCBHHHHHHHCSSCBBCC--------CCCCCBCTTTHHHHHHHHHHHTCCCCBTTBCCCCTTHHHH T ss_pred HHHCCCCCCC-CCCCCCHHHHCCHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH T ss_conf 6612115777-754267998600230776555654210222035544103689999987607843000134378689999 Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 65655443212079899875306776300156--6888999-88654889989999999999999999978886787787 Q gi|254780286|r 209 AIADDIAYDAHDIDDGVRAGLLTVDMLKEISF--LEKHIAS-LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIA 285 (410) Q Consensus 209 eaADDIAY~~hDlEDai~~gli~~~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~ 285 (410) +|||||||++||||||+++|+|+++++.++.+ +...+.+ .....+..........+++..|+.+++.++..+.++. T Consensus 240 d~ADDIAY~~HDlEDair~gli~~~~l~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~l~~~~I~~li~~~~~~~i~~~- 318 (451) T 2pgs_A 240 EAADDICYALIDLEDGLEMDLLDYAEVESLLLGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQ- 318 (451) T ss_dssp HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHTTCC----------------CHHHHHHHHHHHHHHHHHHHHHHTTTS- T ss_pred HHHHHHCHHHHEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH- T ss_conf 9866323102048768870778899999988999867679999862422567899999999999999999999999849- Q ss_pred HHCHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHC-----CC Q ss_conf 515454676442---6852111470357999999999999851789999999999999999999998788845-----74 Q gi|254780286|r 286 HLKPHAIHDIRS---AGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKM-----RG 357 (410) Q Consensus 286 ~~~~~~~~di~~---~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l-----~~ 357 (410) +.+.. ....+..+++++...+..+|+|++++||+++.|+.++.+|+++|..||+.|+..+... +. T Consensus 319 -------~~i~~g~~~~~li~~~~~~~~~~~~~lk~~~~~~iy~~~~v~~~e~~~~~ii~~L~~~~~~~~~~~~~~~~~~ 391 (451) T 2pgs_A 319 -------DALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPS 391 (451) T ss_dssp -------HHHHSSCCSSCGGGGSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCCC T ss_pred -------HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH T ss_conf -------9998312346511112789999999999999999418899999999999999999999998687642102730 Q ss_pred CHHHHHH---------HCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCCCCC Q ss_conf 1067766---------0258000010302000673369999999998188988 Q gi|254780286|r 358 CNQLEYE---------RDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPD 401 (410) Q Consensus 358 ~~~~~~~---------~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~~p~ 401 (410) .+...+. ...+.+.+.|+||||||||||+||+++|++|+|.+|| T Consensus 392 ~~~~~~~~~~~~~~~~~~~~~~~~~r~V~DyIAGMTD~yA~~ly~~L~G~s~~ 444 (451) T 2pgs_A 392 FKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMTDSYASEMAREMTGRSGE 444 (451) T ss_dssp TTHHHHHHTTTTSSCCTTSCHHHHHHHHHHHHHTSCHHHHHHHHHTC------ T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC T ss_conf 78999998643205674357678888998520066388999999974295999 No 4 >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Probab=100.00 E-value=3.1e-35 Score=278.58 Aligned_cols=108 Identities=28% Similarity=0.391 Sum_probs=95.7 Q ss_pred HHHCCCCEEECCHHHHHHCCCCEEEECCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCCCCCC Q ss_conf 43400001102734623275747871699--98706620888999999999998839998-8999999888628998865 Q gi|254780286|r 39 EFQRDRDRMIHTTAFRRLKDKTQVFFHRQ--RDHYRTRLMHTIEVSQIARSLARALRIDE-DLVEAIALAHDFGHPPFGH 115 (410) Q Consensus 39 ~f~rD~dRIi~S~afRRL~~KTQVf~~~~--~d~~rtRLtHslEVa~i~rsi~~~l~~~~-dlvea~~L~HDiGhpPFGH 115 (410) ++..+..|||+|++|||||+||||+|+.. ++++||||||||||+++||++|+.|+.+. ++|++|||+|||||||||| T Consensus 14 ~~~~~~~riI~s~~fqRLr~~~Qlg~~~~v~p~a~htR~~HSLgV~~lar~~~~~L~~~~~~~v~~A~LlHDIGH~PFsH 93 (371) T 2hek_A 14 RVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFSH 93 (371) T ss_dssp EEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSSS T ss_pred ECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC T ss_conf 62889999819976714356612785533179981663019999999999999997543388999999987137785520 Q ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 4789999997312554577657788754321 Q gi|254780286|r 116 VGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 116 ~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) +||++++.|+...++++++.+..++...++. T Consensus 94 ~gE~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (371) T 2hek_A 94 TTEVLLPRERSHEDFTERVIKETEIYEILKQ 124 (371) T ss_dssp CHHHHSTTSSSCCCHHHHHHHHSHHHHHHHT T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH T ss_conf 5767610014530468998753089999987 No 5 >3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* Probab=99.80 E-value=8.8e-19 Score=156.93 Aligned_cols=101 Identities=23% Similarity=0.388 Sum_probs=80.8 Q ss_pred CCCCCHHHCC---CCEEECCHHHHHHCCCCE------EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC----------- Q ss_conf 9999843400---001102734623275747------87169998706620888999999999998839----------- Q gi|254780286|r 34 SLTRSEFQRD---RDRMIHTTAFRRLKDKTQ------VFFHRQRDHYRTRLMHTIEVSQIARSLARALR----------- 93 (410) Q Consensus 34 ~~~R~~f~rD---~dRIi~S~afRRL~~KTQ------Vf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~----------- 93 (410) |+.=...+-| --+||.|++|.||.+.+| |||-. .|||.+|||.|+++|+.+++.|. T Consensus 42 Dpihg~I~~~~~~~~~iIdtp~fQRLR~IkQLG~~~lVfPgA----~HtRfeHSLGv~~la~~~~~~l~~~~~~~~~~~~ 117 (480) T 3irh_A 42 DPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGA----EHSRFSHSLGVYEITRRICEIFQRNYSVERLGEN 117 (480) T ss_dssp ETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSTTGGGTSTTC----CCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGG T ss_pred CCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 698730896879999862997772225565478656378898----3072349999999999999999861541002445 Q ss_pred -CC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf -99---889999998886289988654789999997312554577657788754321 Q gi|254780286|r 94 -ID---EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 94 -~~---~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) ++ ..++.+|||.|||||+||+|++|... ++.|+.+|.+++..++. T Consensus 118 ~~~~~~~~~~~~AaLlHDiGHgPFSH~~E~~~--------~~~He~~s~~ii~~~~~ 166 (480) T 3irh_A 118 GWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNHEAITVQIITSPET 166 (480) T ss_dssp SBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHH--------CCCHHHHHHHHHHCTTS T ss_pred CCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCC--------CCCHHHHHHHHHHHHHH T ss_conf 66778899999999986148783211023002--------43357889999972456 No 6 >2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Probab=99.69 E-value=2.4e-16 Score=138.96 Aligned_cols=93 Identities=28% Similarity=0.427 Sum_probs=80.1 Q ss_pred CEEECCHHHHHHCCCCE------EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCH---HHHHHHHHHHHCCC Q ss_conf 01102734623275747------87169998706620888999999999998839-----998---89999998886289 Q gi|254780286|r 45 DRMIHTTAFRRLKDKTQ------VFFHRQRDHYRTRLMHTIEVSQIARSLARALR-----IDE---DLVEAIALAHDFGH 110 (410) Q Consensus 45 dRIi~S~afRRL~~KTQ------Vf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~-----~~~---dlvea~~L~HDiGh 110 (410) -+||-|+.|.||.+.+| |||... |||.+|||.|+.+|+.+++.|. +.+ .+|++|||.||||| T Consensus 25 ~~iidt~~fqRLr~ikQlg~~~~v~p~a~----HtRfeHSlGv~~la~~~~~~l~~~~~~~~~~~~~~~~~AaLlHDiGH 100 (410) T 2q14_A 25 YDIVRHPLLQRLTRIKQVGLSSVVYPGAQ----HTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGH 100 (410) T ss_dssp HHHHHSHHHHGGGGSBTTTTTTTTCTTCC----CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTC T ss_pred HHHCCCHHHHCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC T ss_conf 98629976720068653786767689983----37000999999999999999985288898789999999999872688 Q ss_pred CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 9886547899999973125545776577887543211 Q gi|254780286|r 111 PPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS 147 (410) Q Consensus 111 pPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~ 147 (410) +||+|++|+++. .+++|+..|.+++..+... T Consensus 101 ~PfSH~~E~~~~------~~~~He~~~~~i~~~~~~~ 131 (410) T 2q14_A 101 GPFSHVLEDTIV------QGVSHEEISLMLMERMNKE 131 (410) T ss_dssp CTTHHHHHTTTS------TTCCHHHHHHHHHHHHHHH T ss_pred CCCCHHHHHHHC------CCCCHHHHHHHHHHHHHHH T ss_conf 843012435402------6875178899999988765 No 7 >2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Probab=98.87 E-value=2.9e-09 Score=86.58 Aligned_cols=122 Identities=21% Similarity=0.101 Sum_probs=80.3 Q ss_pred CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC------ Q ss_conf 74787169998706620888999999999998839998899999988862899886547899999973125545------ Q gi|254780286|r 59 KTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFD------ 132 (410) Q Consensus 59 KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFe------ 132 (410) .||++.+-++..--+|+.||+.||.+|+.||+.+|+|++++..|||.||||..++.+...........+...++ T Consensus 4 ~~~~~~~~~~~~~e~r~~Hs~~Va~~A~~lA~~~gld~~~~~~agLlHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (188) T 2o08_A 4 RGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELL 83 (188) T ss_dssp HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGS T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC T ss_conf 99999999974887674999999999999999809399999999999872355787999999874355137888610124 Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 77657788754321146701000247888776347577886444552100145776676402231336673217986565 Q gi|254780286|r 133 HNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIAD 212 (410) Q Consensus 133 gNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaAD 212 (410) |-.-|..++... -.++.-+++.+|.-|..+.. ..+.++.|+-.|| T Consensus 84 H~~~g~~~~~~~--------~~~~~~~v~~aI~~H~~g~~---------------------------~~~~~~~Iv~~AD 128 (188) T 2o08_A 84 HAPCGAYYVREE--------VGIEDEDVLQAIRFHTTGRP---------------------------NMSLLEKIIFLAD 128 (188) T ss_dssp HHHHHHHHHHHH--------HCCCCHHHHHHHHTTTTCCT---------------------------TCCHHHHHHHHHH T ss_pred HHHHHHHHHHHH--------CCCCHHHHHHHHHHHCCCCC---------------------------CCCHHHHHHHHHH T ss_conf 799999999756--------48987999999998587989---------------------------9887999999999 Q ss_pred HHH Q ss_conf 544 Q gi|254780286|r 213 DIA 215 (410) Q Consensus 213 DIA 215 (410) -|+ T Consensus 129 ~i~ 131 (188) T 2o08_A 129 YIE 131 (188) T ss_dssp HHS T ss_pred HHC T ss_conf 814 No 8 >2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Probab=98.31 E-value=5.5e-05 Score=54.93 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=65.4 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC----------CCCCCCHHHHH Q ss_conf 66208889999999999988399988999999888628998865478999999731255----------45776577887 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGG----------FDHNIQSFRIV 141 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~g----------FegNaQ~~Ril 141 (410) ..|+.||+.||.+|+.||+.+|+|++.+..|||.||||-- +..|+.++..-+ ++. ..|-.-|-.++ T Consensus 25 ~~r~~Hs~~Va~lA~~lA~~~g~d~~~~~~AgLLHDIGK~---~~~~~~l~~~~~-~~~~~d~~~~~~~~~H~~~g~~~l 100 (196) T 2ogi_A 25 DKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE---LSDDEFLRLIDK-YQPDPDLKKWGNNIWHGLVGIYKI 100 (196) T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT---CCHHHHHHHHHH-HCCCTGGGGSCHHHHHHHTHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHH T ss_conf 5474999999999999999909499999999999970465---685999998875-489855988600123899999999 Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 54321146701000247888776347577886444552100145776676402231336673217986565544 Q gi|254780286|r 142 TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA 215 (410) Q Consensus 142 t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA 215 (410) ... .| ....+++++|..|.... ...+.++.|+-+||-|. T Consensus 101 ~~~-------~~-~~~~~i~~aI~~H~~g~---------------------------~~~~~~~kIv~~AD~l~ 139 (196) T 2ogi_A 101 QED-------LA-IKDQDILAAIAKHTVGS---------------------------AQMSTLDKIVYVADYIE 139 (196) T ss_dssp HHH-------SC-CCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHC T ss_pred HHH-------CC-CCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHCC T ss_conf 866-------28-98199999999748899---------------------------99898999999897527 No 9 >3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Probab=98.21 E-value=2.5e-05 Score=57.54 Aligned_cols=106 Identities=20% Similarity=0.142 Sum_probs=68.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----------CCCCCCCCCHHHHHH Q ss_conf 6208889999999999988399988999999888628998865478999999731----------255457765778875 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSS----------YGGFDHNIQSFRIVT 142 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~----------~~gFegNaQ~~Rilt 142 (410) .|..||+.||..++.||+.+|+|++.+..|||.||||-- +.-+..+...-+. ..++.|..=|-.++. T Consensus 19 ~r~~Hs~~Va~la~~lA~~~g~d~~~~~~agLlHDIGK~---~~~~~~l~~~~~~~~~~~~~e~~~~~~~H~~~ga~il~ 95 (190) T 3ccg_A 19 KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK---LPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAK 95 (190) T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT---SCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHH T ss_conf 571799999999999999919599999999999861554---68799999987526774499986531126999999989 Q ss_pred HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH Q ss_conf 43211467010002478887763475778864445521001457766764022313366732179865655443 Q gi|254780286|r 143 ELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAY 216 (410) Q Consensus 143 ~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY 216 (410) ..- -.+.-+++.+|..|.... ...+++++|+-+||-|.. T Consensus 96 ~~~--------~~~~~~i~~aI~~H~~g~---------------------------~~~~~~~kIv~~AD~i~~ 134 (190) T 3ccg_A 96 KVI--------GIDDEDVLNAIEFHTTGR---------------------------PNMSLLEKIIYIADYIEP 134 (190) T ss_dssp HTT--------CCCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHST T ss_pred HHC--------CCCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHHCC T ss_conf 774--------798699999998629899---------------------------998989999999988477 No 10 >2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Probab=97.68 E-value=9.5e-05 Score=53.19 Aligned_cols=99 Identities=23% Similarity=0.262 Sum_probs=62.2 Q ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC Q ss_conf 20888999999999998839998899999988862899886547899999973125545776577887543211467010 Q gi|254780286|r 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG 153 (410) Q Consensus 74 RLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~G 153 (410) -+.|+.-|.+.|+.|++..+.|.++|++|||.||||.|- . ...+.+|...+-+++..+=.. -| T Consensus 34 d~~H~~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k-----------~--~~~~~~h~~~~a~~a~~~L~~----~~ 96 (220) T 2pq7_A 34 DISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPH-----------E--ALTGVDHAESGAEYASGLLPT----MG 96 (220) T ss_dssp SHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHH-----------H--HHHCCCHHHHHHHHHHHHGGG----GT T ss_pred CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------H--CCCCCCHHHHHHHHHHHHHHH----CC T ss_conf 889999999999999988599999999999985540386-----------4--267534899999999999987----79 Q ss_pred CCHHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH Q ss_conf 00247--88877634757788644455210014577667640223133667321798656554 Q gi|254780286|r 154 INLTW--ETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI 214 (410) Q Consensus 154 LNLT~--atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDI 214 (410) +.-+. .+..+|.-|..+.. ....++|++||.-||-+ T Consensus 97 ~~~~~i~~I~~~I~~hs~~~~-------------------------~~~~sle~~Iv~DADrL 134 (220) T 2pq7_A 97 FDISFVAEVSKAIRSHRYSGG-------------------------LTPTSLTGKILQDADRL 134 (220) T ss_dssp CCHHHHHHHHHHHHHCC------------------------------CCCSHHHHHHHHHHHG T ss_pred CCHHHHHHHHHHHHHCCCCCC-------------------------CCCCCHHHHHHHHHHHH T ss_conf 999999999999998076557-------------------------77688599999999977 No 11 >3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Probab=97.65 E-value=6.6e-05 Score=54.38 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=43.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 987066208889999999999988399988999999888628998865478 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE 118 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE 118 (410) ++.--+-+.|++-|.+.|+.|++..+.|.++|++|||.||||.++..+.++ T Consensus 20 ~~~~~Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDigd~k~~~~~~ 70 (223) T 3djb_A 20 KDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEE 70 (223) T ss_dssp SSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSST T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 699865889999999999999988599899999999996415412352456 No 12 >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Probab=97.65 E-value=0.00014 Score=51.98 Aligned_cols=46 Identities=22% Similarity=0.245 Sum_probs=40.9 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 6208889999999999988399988999999888628998865478 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE 118 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE 118 (410) +-+.|++-|.+.|+.|++..+.|.++|++|||.||||.++.+...| T Consensus 25 Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~lAAlLHDig~~k~~~~~~ 70 (223) T 3dto_A 25 HDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPE 70 (223) T ss_dssp -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------C T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH T ss_conf 7889999999999999988488899999999973102244577567 No 13 >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Probab=97.57 E-value=7.6e-05 Score=53.92 Aligned_cols=45 Identities=20% Similarity=0.113 Sum_probs=40.1 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH Q ss_conf 620888999999999998839998899999988862899886547 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG 117 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~G 117 (410) .-+.|++-|.+.|+.|+...+.|.++|++|||.||||-.+..|.+ T Consensus 25 Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k~~~~~ 69 (239) T 3gw7_A 25 HDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQ 69 (239) T ss_dssp --CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC------- T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCC T ss_conf 888999999999999998749889999999997245510026883 No 14 >3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Probab=97.31 E-value=0.00047 Score=48.06 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=40.4 Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 6208889999999999988399988999999888628998865478 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE 118 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE 118 (410) +-.-|++-|.+.|+.|++..+.|.++|++|||.||||.++..+..+ T Consensus 25 Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDig~~k~~~~~~ 70 (209) T 3b57_A 25 HDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTDEQ 70 (209) T ss_dssp CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-------C T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCHH T ss_conf 6889999999999999987599899999999983200001477265 No 15 >2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: a.211.1.1 Probab=97.27 E-value=0.00067 Score=46.94 Aligned_cols=50 Identities=22% Similarity=0.140 Sum_probs=41.8 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCCCHH Q ss_conf 87066208889999999999988399-988999999888628998865478 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPPFGHVGE 118 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpPFGH~GE 118 (410) |..-+-+.|++-|...|..|+...+. |..+|++|||.||||.++..|..+ T Consensus 21 ~~~~Hd~~H~~RV~~~A~~Ia~~e~~~D~~vv~~AAlLHDigd~k~~~~~~ 71 (225) T 2qgs_A 21 DTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEIL 71 (225) T ss_dssp CSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSSCHHH T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHH T ss_conf 998668799999999999999884988599999999987313212345167 No 16 >2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Probab=97.04 E-value=0.0014 Score=44.58 Aligned_cols=46 Identities=28% Similarity=0.270 Sum_probs=39.8 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC Q ss_conf 9870662088899999999999883999889999998886289988 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPF 113 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPF 113 (410) +|.--+-+-|++-|...|+.|++..+.|.++|++|||.||||.++. T Consensus 25 ~d~s~Hd~~Hv~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDi~d~k~ 70 (231) T 2pjq_A 25 HDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKL 70 (231) T ss_dssp TCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC--- T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC T ss_conf 5888678799999999999999884999999999999971046446 No 17 >3m1t_A Putative phosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis} Probab=96.67 E-value=0.00079 Score=46.41 Aligned_cols=131 Identities=16% Similarity=0.080 Sum_probs=76.5 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC Q ss_conf 98706620888999999999998839998899999988862899886547899999973125545776577887543211 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS 147 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~ 147 (410) +...+.=..||+.||.+++.|++.++.+++-+-.++|.||||-....+...+.-..+..... .+. .+ ..+|.. T Consensus 100 ~~~~~~~w~~s~~~A~~a~~la~~~~~~~~~a~~agLLhdiG~l~l~~~~~~~~~~i~~~~~---~~~-~~---~~~E~~ 172 (275) T 3m1t_A 100 GFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAVAATISAAVA---DGA-DR---NLMEKE 172 (275) T ss_dssp TCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHH---TTC-CH---HHHHHH T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC-CH---HHHHHH T ss_conf 46899999999999999999998702369999998888778999998766789999999872---799-88---999999 Q ss_pred CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH Q ss_conf 4670100024788877634757788644455210014577667-6402231336673217986565544321207 Q gi|254780286|r 148 YADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYY-HIHGLSLANFASLEGQVAAIADDIAYDAHDI 221 (410) Q Consensus 148 ~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~slEa~iveaADDIAY~~hDl 221 (410) =+..|++.+++.+--.|...+. +.+.. .-.........+..+.++.+||-||-..... T Consensus 173 -----~~g~~h~~ig~~l~~~W~lp~~-----------i~~~I~~hh~p~~~~~~~~l~~iv~lA~~la~~~~~~ 231 (275) T 3m1t_A 173 -----LLGYDNAEIGALLAQSWKFTPH-----------LVKGIQFQNHPKSAEPYSKLAGMLAMAKQIAADWDKI 231 (275) T ss_dssp -----HHSSCHHHHHHHHHHHTTCCHH-----------HHHHHHTTTCGGGCSSCCHHHHHHHHHHHHHHHGGGS T ss_pred -----HHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC T ss_conf -----9788899999999987089899-----------9999998659555788877999999999999857879 No 18 >3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens} Probab=96.43 E-value=0.0015 Score=44.45 Aligned_cols=135 Identities=15% Similarity=0.082 Sum_probs=70.1 Q ss_pred EECCCCCCCCCCH-HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH Q ss_conf 7169998706620-888999999999998839-99889999998886289988654789999997312554577657788 Q gi|254780286|r 63 FFHRQRDHYRTRL-MHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI 140 (410) Q Consensus 63 f~~~~~d~~rtRL-tHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri 140 (410) |+...+.+-..++ .||+.||.+++.|++.++ .+++.+-+++|.||||-..+-+.-.+.-.++... -+.+..++. T Consensus 107 ~~~~~~~~~~~~~w~hS~~~A~~a~~lA~~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~i~~~---~~~~~~~~~- 182 (305) T 3hc1_A 107 FKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTL---VDEEKITFG- 182 (305) T ss_dssp HHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHH---HHHHCCCHH- T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCHH- T ss_conf 6467530268999999999999999999873789999999999998149999977657989999999---865799989- Q ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH Q ss_conf 75432114670100024788877634757788644455210014577667640223133667321798656554432 Q gi|254780286|r 141 VTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD 217 (410) Q Consensus 141 lt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~ 217 (410) ..|.+ =+..|++.+++.+---|...+.- -......... ...... ....+++|-+||-||=. T Consensus 183 --~~E~~-----~~g~~h~~ig~~l~~~W~lP~~i-------~~~i~~hh~p-~~~~~~-~~~l~~iv~lA~~l~~~ 243 (305) T 3hc1_A 183 --QAEER-----LFGTSHCEVGFALAKRWSLNEFI-------CDTILYHHDI-EAVPYK-QAAIVAMVAFADEYCTL 243 (305) T ss_dssp --HHHHH-----HHSSCHHHHHHHHHHHTTCCHHH-------HHHHHHTTCG-GGCSSS-CCHHHHHHHHHHHHHHH T ss_pred --HHHHH-----HHCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHCCC-CCCCCC-CHHHHHHHHHHHHHHHH T ss_conf --99999-----96879999999999986989999-------9999986692-327856-11396999999999998 No 19 >3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei} Probab=94.64 E-value=0.061 Score=32.46 Aligned_cols=68 Identities=13% Similarity=0.245 Sum_probs=34.4 Q ss_pred HHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCC-CCCCCC Q ss_conf 340000110273462327574787169998706620888999999999998839-99889999998886289-988654 Q gi|254780286|r 40 FQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGH-PPFGHV 116 (410) Q Consensus 40 f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGh-pPFGH~ 116 (410) .+.|-++|+-+--++-=.+.-+|. ++. +|.+-...+++-+|+.+. .++.=+....-++++|- |||||. T Consensus 25 ~~i~~~~~~Ktvll~~~~g~v~~v-~p~--------~~~ldl~~l~~~~g~~~~~~~~~~~~~~~~~~~~G~vpp~g~~ 94 (457) T 3mem_A 25 SQIDTGHLLRMVLLSDDQGNLQAI-CRR--------NDMLDLEALNKRLGRDLRMMQRREQVRVRQKAGLQELPALPSL 94 (457) T ss_dssp CSSCGGGBEEEEEEEETTEEEEEE-EET--------TSEECHHHHHHHHTCCCEECCHHHHHHHHHHHTCSSCCSCGGG T ss_pred CCCCHHHEEEEEEEEECCCEEEEE-EEC--------CCEECHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC T ss_conf 298961573578998789679999-738--------8725799999996888455992999988269978785977777 No 20 >3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A* Probab=94.21 E-value=0.028 Score=34.94 Aligned_cols=73 Identities=23% Similarity=0.433 Sum_probs=43.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCC---C--CCCCC Q ss_conf 706620888999999999998839998-----89--9999988862899886547899999973-1255---4--57765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLS-SYGG---F--DHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~-~~~g---F--egNaQ 136 (410) -+|| -+|+..|+|.+-.+-...++.. ++ +=.|||+||+|||=.--.-...-+.... -|++ - -|=+. T Consensus 73 pYHN-~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAAl~HDv~HpG~~N~fli~t~~~la~~Ynd~SvLEn~H~~~ 151 (329) T 3dyn_A 73 PFHN-FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAV 151 (329) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHH T ss_conf 9977-899998999999999854755568989999999999980489999996899862876888749986468889999 Q ss_pred HHHHHHH Q ss_conf 7788754 Q gi|254780286|r 137 SFRIVTE 143 (410) Q Consensus 137 ~~Rilt~ 143 (410) +++||.+ T Consensus 152 ~~~lL~~ 158 (329) T 3dyn_A 152 AFQILAE 158 (329) T ss_dssp HHHHHTS T ss_pred HHHHHHC T ss_conf 9999817 No 21 >3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A Probab=93.97 E-value=0.036 Score=34.16 Aligned_cols=84 Identities=11% Similarity=0.097 Sum_probs=53.4 Q ss_pred HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC Q ss_conf 0888999999999998839-998899999988862899886547899999973125545776577887543211467010 Q gi|254780286|r 75 LMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG 153 (410) Q Consensus 75 LtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~G 153 (410) ..||+.+|.+++.|++.++ .+++.+-.+||.||||-..+-...-+...++.+.- .+-.. ...|+.. T Consensus 110 w~hs~~~A~~a~~la~~~~~~~~~~a~~aGLLhdiG~l~l~~~~p~~~~~~~~~~-------~~~~~-~~~E~~~----- 176 (288) T 3ljx_A 110 WQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKA-------DGEAL-IALERER----- 176 (288) T ss_dssp HHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHC-------CHHHH-HHHHHHH----- T ss_pred HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC-------CCCCH-HHHHHHH----- T ss_conf 9999999999999999848999999999899987279999786769999999874-------37774-8999999----- Q ss_pred CCHHHHHHHHHHCCCCCC Q ss_conf 002478887763475778 Q gi|254780286|r 154 INLTWETLEGLIGHNGPI 171 (410) Q Consensus 154 LNLT~atL~~iiKyp~~~ 171 (410) +..|++.+++.+.-.|.. T Consensus 177 ~G~~h~~ig~~l~~~W~l 194 (288) T 3ljx_A 177 FATDHDELTRMLLTDWGF 194 (288) T ss_dssp HSSCHHHHHHHHHHHTTC T ss_pred HCCCHHHHHHHHHHHCCC T ss_conf 888999999999998597 No 22 >3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii} Probab=93.72 E-value=0.0048 Score=40.61 Aligned_cols=71 Identities=8% Similarity=0.001 Sum_probs=52.8 Q ss_pred CCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHCCC Q ss_conf 998434000011027346232757478716999870662088899999999999883999-88----9999998886289 Q gi|254780286|r 36 TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRID-ED----LVEAIALAHDFGH 110 (410) Q Consensus 36 ~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~-~d----lvea~~L~HDiGh 110 (410) -++.|++. +-.+.+|+..=.|.+|..++.|.--=|-|+|||+..+-.+...-.-. .+ -|=.|||.||||. T Consensus 43 ~~~~f~~~-----yl~pl~~~a~~vQ~lPAse~~h~GGlldh~Lev~~~alr~~~ee~~~q~~~W~~Avf~AaLlhdigk 117 (393) T 3kq5_A 43 PTEQYAQL-----YEALVYRFVEFVQVLPIRLDEPLCSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAH 117 (393) T ss_dssp CHHHHHHH-----THHHHHHHHHHHTTCCSSTTSCTTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTH T ss_pred CHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC T ss_conf 99999999-----9999999999997288876788875788899999999863876555457889999999999963241 Q ss_pred C Q ss_conf 9 Q gi|254780286|r 111 P 111 (410) Q Consensus 111 p 111 (410) + T Consensus 118 ~ 118 (393) T 3kq5_A 118 A 118 (393) T ss_dssp H T ss_pred C T ss_conf 1 No 23 >1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3hc8_A* 3hdz_A* 1t9r_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* 3jwq_A* 3jwr_A* Probab=92.76 E-value=0.087 Score=31.32 Aligned_cols=73 Identities=22% Similarity=0.263 Sum_probs=42.4 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCHH-----H--HHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCC-----CCCCCC Q ss_conf 7066208889999999999988399988-----9--99999888628998865478999999731-255-----457765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDED-----L--VEAIALAHDFGHPPFGHVGEDVLQELLSS-YGG-----FDHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~d-----l--vea~~L~HDiGhpPFGH~GE~al~~~~~~-~~g-----FegNaQ 136 (410) -+|| -+|...|+|..-.+-+..++..- + +=.|||+||+|||-.--.=...-+..... |+. =-|=++ T Consensus 99 pYHN-~~HA~dV~q~~~~ll~~~~~~~~ls~~E~~alliAal~HDv~HpG~nN~flv~~~s~La~lYnd~SvLE~hH~~~ 177 (347) T 1tbf_A 99 AYHN-WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQ 177 (347) T ss_dssp SSSS-HHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHH T ss_conf 9747-999999999999999724610239999999999999861579999997899852876889719987208999999 Q ss_pred HHHHHHH Q ss_conf 7788754 Q gi|254780286|r 137 SFRIVTE 143 (410) Q Consensus 137 ~~Rilt~ 143 (410) +|+|+.+ T Consensus 178 ~~~ll~~ 184 (347) T 1tbf_A 178 CLMILNS 184 (347) T ss_dssp HHHHHHS T ss_pred HHHHHHC T ss_conf 9999826 No 24 >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ... Probab=92.04 E-value=0.07 Score=32.00 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=32.0 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCC Q ss_conf 706620888999999999998839998-----89--9999988862899886 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFG 114 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFG 114 (410) -+|| -+|...|.|..-.+-...++.. ++ +=.|||+||+|||-.- T Consensus 81 pyHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAal~HD~~HpG~~ 131 (377) T 1f0j_A 81 AYHN-SLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVS 131 (377) T ss_dssp SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSC T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC T ss_conf 8743-99999899999999964370000898999999999998204899888 No 25 >3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 2k31_A* Probab=91.82 E-value=0.15 Score=29.62 Aligned_cols=20 Identities=15% Similarity=0.044 Sum_probs=9.5 Q ss_pred CHHHHHHHHHHHHCCCCCCC Q ss_conf 36999999999818898855 Q gi|254780286|r 384 TDSYAIREHHILFGYIPDFA 403 (410) Q Consensus 384 TD~YAi~ly~kL~G~~p~~~ 403 (410) -|..++-+|+.|....|++. T Consensus 824 ~~~~~~Pl~~~l~~~~p~~~ 843 (878) T 3bjc_A 824 IDAICLQLYEALTHVSEDCF 843 (878) T ss_dssp HHHTHHHHHHHHHHHCGGGH T ss_pred HHHHHHHHHHHHHHHCHHHH T ss_conf 99999999999999786489 No 26 >3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A Probab=91.78 E-value=0.1 Score=30.87 Aligned_cols=44 Identities=23% Similarity=0.452 Sum_probs=32.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCC----CH-HH--HHHHHHHHHCCCCCCC Q ss_conf 7066208889999999999988399----98-89--9999988862899886 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRI----DE-DL--VEAIALAHDFGHPPFG 114 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~----~~-dl--vea~~L~HDiGhpPFG 114 (410) -+|| -+|+..|.|..-.+-+..++ ++ ++ +=.|||+||+|||-.- T Consensus 80 pyHN-~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~ 130 (345) T 3itu_A 80 PYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTN 130 (345) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCSCC T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC T ss_conf 8845-88899999999999972370012898999999999997256899999 No 27 >3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Probab=91.58 E-value=0.13 Score=29.98 Aligned_cols=24 Identities=17% Similarity=0.148 Sum_probs=16.1 Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCC Q ss_conf 733699999999981889885555 Q gi|254780286|r 382 GMTDSYAIREHHILFGYIPDFAVD 405 (410) Q Consensus 382 GMTD~YAi~ly~kL~G~~p~~~~~ 405 (410) |.-+..++-+|+.|....|++... T Consensus 648 ~Fi~~~~~Pl~~~l~~~~p~~~~~ 671 (691) T 3ibj_A 648 SFMEHIAMPIYKLLQDLFPKAAEL 671 (691) T ss_dssp HHHHHTHHHHHHHHTTTCGGGHHH T ss_pred HHHHHHHHHHHHHHHHHCCCHHHH T ss_conf 999999999999999978036999 No 28 >3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A* Probab=91.47 E-value=0.17 Score=29.11 Aligned_cols=47 Identities=17% Similarity=0.330 Sum_probs=31.2 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCC--CCH-HH--HHHHHHHHHCCCCCCCCCHH Q ss_conf 8706620888999999999998839--998-89--99999888628998865478 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLARALR--IDE-DL--VEAIALAHDFGHPPFGHVGE 118 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~~l~--~~~-dl--vea~~L~HDiGhpPFGH~GE 118 (410) -=+|| -.|...|+|..-.+-...+ +++ ++ +=.|||+||+||| |...- T Consensus 108 nPYHN-~~HA~dV~q~~~~lL~~~~~~lt~lE~~alliAALcHDv~Hp--G~~N~ 159 (380) T 3hr1_A 108 VPYHN-WKHAVTVAHCMYAILQNNNGLFTDLERKGLLIACLCHDLDHR--GFSNS 159 (380) T ss_dssp CSSSS-HHHHHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHHTTTTCC--SCCHH T ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCH T ss_conf 99817-899999999999999437656898999999999996027999--98968 No 29 >2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major} Probab=91.26 E-value=0.13 Score=30.10 Aligned_cols=72 Identities=24% Similarity=0.339 Sum_probs=44.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHH------HHHHHCCC---C- Q ss_conf 8706620888999999999998839998-----89--999998886289988654789999------99731255---4- Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQ------ELLSSYGG---F- 131 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~------~~~~~~~g---F- 131 (410) --+|| -.|...|.|..-.+-...++.. ++ +=.|||+||+||| |....--++ .....++. - T Consensus 97 nPYHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAAl~HDv~Hp--G~nN~fli~~~~~LA~lY~~~nD~SvLE 173 (359) T 2r8q_A 97 VPYHN-FYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHDLDHM--GVNNSFYLKTDSPLGILSSASGNNSVLE 173 (359) T ss_dssp CSSSS-HHHHHHHHHHHHHHHHTSCGGGGSCHHHHHHHHHHHHHTTTTCC--SCCHHHHHHTTCHHHHHHHHHSCCCHHH T ss_pred CCCCC-HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCHHHHHHCCCCCCCHHH T ss_conf 99827-89999999999999972653210898999999999997257999--9981899971889998740347886779 Q ss_pred -CCCCCHHHHHHH Q ss_conf -577657788754 Q gi|254780286|r 132 -DHNIQSFRIVTE 143 (410) Q Consensus 132 -egNaQ~~Rilt~ 143 (410) -|-+.+|+||.+ T Consensus 174 nhH~~~~~~lL~~ 186 (359) T 2r8q_A 174 VHHCSLAIEILSD 186 (359) T ss_dssp HHHHHHHHHHHTS T ss_pred HHHHHHHHHHHCC T ss_conf 9999999999847 No 30 >3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A* Probab=91.16 E-value=0.047 Score=33.31 Aligned_cols=71 Identities=24% Similarity=0.341 Sum_probs=40.5 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCC-----CCCC Q ss_conf 706620888999999999998839----998-89--9999988862899886547899999---9731255-----4577 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQE---LLSSYGG-----FDHN 134 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~~---~~~~~~g-----FegN 134 (410) =+|| .+|+..|.|..-.+-...+ +++ +. +=.|||+||+||| |....--++. ...-|++ =-|- T Consensus 73 pYHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAal~HDv~Hp--G~~N~fl~~~~~~la~~y~d~SvLE~~H~ 149 (338) T 3ecm_A 73 PYHN-STHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHP--GRTNSFLCNAGSELAILYNDTAVLESHHA 149 (338) T ss_dssp SSSS-HHHHHHHHHHHHHHHTSHHHHTTSCHHHHHHHHHHHHHTTTTCC--SSCHHHHHHTTCHHHHHTTTSSHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCC--CCCCHHHHHCCCHHHHHCCCCCHHHHHHH T ss_conf 8755-99999999999999970332001998999999999998147999--98768888808838988099975377899 Q ss_pred CCHHHHHHH Q ss_conf 657788754 Q gi|254780286|r 135 IQSFRIVTE 143 (410) Q Consensus 135 aQ~~Rilt~ 143 (410) +.++++|.+ T Consensus 150 ~~~~~ll~~ 158 (338) T 3ecm_A 150 ALAFQLTTG 158 (338) T ss_dssp HHHHHHHHT T ss_pred HHHHHHHCC T ss_conf 999999745 No 31 >1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 2fm0_A* 2fm5_A* 1oyn_A* 1ptw_A* 1q9m_A* 1zkn_A* 2qyn_A* 2pw3_A* ... Probab=91.07 E-value=0.1 Score=30.75 Aligned_cols=45 Identities=20% Similarity=0.364 Sum_probs=32.2 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCC Q ss_conf 706620888999999999998839998-----89--99999888628998865 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGH 115 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH 115 (410) =+|| -+|...|.|..-.+-+..++.+ ++ +=.|||+||+|||..-- T Consensus 94 pYHN-~~HA~dV~q~~~~lL~~~~l~~~l~~~e~~alliAAl~HDv~HpG~~N 145 (349) T 1y2k_A 94 AYHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSN 145 (349) T ss_dssp SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCH T ss_pred CCCC-HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCC T ss_conf 8725-999999999999999753722108988999999999982269999995 No 32 >1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A* Probab=90.78 E-value=0.051 Score=32.99 Aligned_cols=70 Identities=17% Similarity=0.289 Sum_probs=40.3 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHH--HH-HHHCCC-----CCCC Q ss_conf 706620888999999999998839----998-89--999998886289988654789999--99-731255-----4577 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQ--EL-LSSYGG-----FDHN 134 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~--~~-~~~~~g-----FegN 134 (410) -+|| -+|...|+|..-.+-+..+ +++ ++ +=.|||+||+|||- ....--++ .. ..-|++ =-|- T Consensus 81 PYHN-~~HA~dV~q~~~~ll~~~~l~~~l~~~e~~alliAal~HDv~HpG--~~N~fl~~t~s~lA~~Ynd~SvLEn~H~ 157 (353) T 1zkl_A 81 PYHN-AVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPG--VNQPFLIKTNHYLATLYKNTSVLENHHW 157 (353) T ss_dssp SSSS-HHHHHHHHHHHHHHHTSHHHHTTCCHHHHHHHHHHHHHTTTTCCS--SCHHHHHHTTCHHHHHTTTSSHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCHHHHHCCCHHHHHCCCCCHHHHHHH T ss_conf 8752-999999999999999501143108999999999999973268999--9858998728878887199638789999 Q ss_pred CCHHHHHH Q ss_conf 65778875 Q gi|254780286|r 135 IQSFRIVT 142 (410) Q Consensus 135 aQ~~Rilt 142 (410) +.+|+||. T Consensus 158 ~~~~~lL~ 165 (353) T 1zkl_A 158 RSAVGLLR 165 (353) T ss_dssp HHHHHHHH T ss_pred HHHHHHHH T ss_conf 99999986 No 33 >1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2 Probab=90.43 E-value=0.19 Score=28.73 Aligned_cols=151 Identities=18% Similarity=0.111 Sum_probs=69.9 Q ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCC----H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCC-----CCCCCC Q ss_conf 70662088899999999999883999----8-89--9999988862899886547899999973-1255-----457765 Q gi|254780286|r 70 HYRTRLMHTIEVSQIARSLARALRID----E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLS-SYGG-----FDHNIQ 136 (410) Q Consensus 70 ~~rtRLtHslEVa~i~rsi~~~l~~~----~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~-~~~g-----FegNaQ 136 (410) =+|| -+|...|.|-.-.+-...++. + ++ +=.|||+||+|||-+--.-.-.-+.... -|+. =-|=+. T Consensus 80 PYHN-~~HA~dV~q~~~~~l~~~~~~~~l~~~e~~alliAAl~HD~~HpG~~N~fli~t~~~LA~~Ynd~SvLEnhH~~~ 158 (365) T 1taz_A 80 PYHN-QIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISS 158 (365) T ss_dssp SSSS-HHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH T ss_pred CCCC-HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHH T ss_conf 7535-999999999999999713332018999999999999981358999985588636877888649987778999999 Q ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHH Q ss_conf 778875432114670100024788877634757-78864445521001457766764022-3133667321798656554 Q gi|254780286|r 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNG-PILPQDLDKPRIIPRIFSDYYHIHGL-SLANFASLEGQVAAIADDI 214 (410) Q Consensus 137 ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~slEa~iveaADDI 214 (410) +|+|+.+-+. .-+ .||+.+...-+.|.=. .+.+.+..+. .+....+...... .......+-.-+|-+| || T Consensus 159 ~~~lL~~~~~--ni~--~~l~~~~~~~~r~~ii~~ILaTDms~H---~~~~~~~~~~~~~~~~~~~~~ll~~li~~A-Di 230 (365) T 1taz_A 159 VFRLMQDDEM--NIF--INLTKDEFVELRALVIEMVLATDMSCH---FQQVKTMKTALQQLERIDKPKALSLLLHAA-DI 230 (365) T ss_dssp HHHHTTSGGG--CTT--TTSCHHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHC--CCCHHHHHHHHHHHH-HT T ss_pred HHHHHHCCCC--CCC--CCCCHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CC T ss_conf 9999816133--411--289999999999999999732657879---999999999987421024999999999861-04 Q ss_pred HHHHHHHHHHHHHHH Q ss_conf 432120798998753 Q gi|254780286|r 215 AYDAHDIDDGVRAGL 229 (410) Q Consensus 215 AY~~hDlEDai~~gl 229 (410) +..+...+-+.+-.. T Consensus 231 s~~~rp~~~~~~W~~ 245 (365) T 1taz_A 231 SHPTKQWLVHSRWTK 245 (365) T ss_dssp CGGGSCHHHHHHHHH T ss_pred CCCCCCHHHHHHHHH T ss_conf 442377799999999 No 34 >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Probab=90.20 E-value=0.15 Score=29.47 Aligned_cols=42 Identities=21% Similarity=0.409 Sum_probs=18.7 Q ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCC Q ss_conf 06620888999999999998839998-----89--999998886289988 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPF 113 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPF 113 (410) +||- +|...|.|..-.+-...++.. ++ +=.|||.||+|||.. T Consensus 161 YHN~-~HA~DV~q~~~~lL~~~~l~~~lt~lE~~alliAAl~HDv~HpG~ 209 (421) T 3g4g_A 161 YHNN-IHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGV 209 (421) T ss_dssp SSSH-HHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSS T ss_pred CCCH-HHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCC T ss_conf 7559-999999999999996526332189899999999999813799998 No 35 >2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3} Probab=90.05 E-value=0.36 Score=26.72 Aligned_cols=37 Identities=32% Similarity=0.416 Sum_probs=30.9 Q ss_pred CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC Q ss_conf 62088899999999999883-----99988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG 109 (410) |=-.||..||-||--+|..+ ++|.+=|-..||.||++ T Consensus 32 sVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~ 73 (177) T 2cqz_A 32 SIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLA 73 (177) T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 499999999999999998987735676999999999983489 No 36 >1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1 Probab=89.68 E-value=0.4 Score=26.37 Aligned_cols=37 Identities=35% Similarity=0.433 Sum_probs=31.6 Q ss_pred CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC Q ss_conf 62088899999999999883-----99988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG 109 (410) |=-.||..||-+|--|+..+ ++|.+-|-..||.||++ T Consensus 37 sVAeHs~~vA~ia~~la~~~~~~g~~vd~~k~~~maL~HDl~ 78 (184) T 1xx7_A 37 SVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLG 78 (184) T ss_dssp BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 599999999999999999986545576999999999998649 No 37 >2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* 3lxg_A* Probab=89.41 E-value=0.19 Score=28.72 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=32.0 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHCC--CCH-HH--HHHHHHHHHCCCCCCCCCHHH Q ss_conf 98706620888999999999998839--998-89--999998886289988654789 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARALR--IDE-DL--VEAIALAHDFGHPPFGHVGED 119 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~l~--~~~-dl--vea~~L~HDiGhpPFGH~GE~ 119 (410) +--+|| -.|...|+|..-.+-...+ +++ ++ +=.|||+||+|||=+--.-.. T Consensus 76 ~~pYHN-~~HA~dV~q~~~~~L~~~~~~l~~~e~~alliAal~HDv~H~G~~N~fl~ 131 (331) T 2our_A 76 RVPYHN-WKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQ 131 (331) T ss_dssp SCSSSS-HHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHH T ss_pred CCCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH T ss_conf 999807-89999999999999837775799899999999999843699999988888 No 38 >3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua} Probab=89.20 E-value=0.53 Score=25.49 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=32.7 Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCC Q ss_conf 987066208889999999999988-----399988999999888628 Q gi|254780286|r 68 RDHYRTRLMHTIEVSQIARSLARA-----LRIDEDLVEAIALAHDFG 109 (410) Q Consensus 68 ~d~~rtRLtHslEVa~i~rsi~~~-----l~~~~dlvea~~L~HDiG 109 (410) |-.-.|=..||+.||.||-.||.. -++|.+=+-..||-||++ T Consensus 25 ~~~~EsVAeHS~~VA~iA~~La~i~~~~~~~vd~~k~~~~AL~HD~~ 71 (216) T 3mzo_A 25 KYQEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYS 71 (216) T ss_dssp CSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGG T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 99966299999999999999998887526788999999999973028 No 39 >3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B} Probab=88.22 E-value=1.3 Score=22.65 Aligned_cols=114 Identities=12% Similarity=0.055 Sum_probs=61.4 Q ss_pred CHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 2088899999999999883-------999889999998886289988654789999997312554577657788754321 Q gi|254780286|r 74 RLMHTIEVSQIARSLARAL-------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 74 RLtHslEVa~i~rsi~~~l-------~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) -..||+.||.+++.+++.+ +.+.|.+-.+||.||||-.+ +...+.++. +.+.-... |. T Consensus 118 ~w~~s~~~a~~a~~la~~~~~~~~~~~~~~~~a~~aGLlhdiG~l~--------l~~~~~~~~------~~~~~~~~-e~ 182 (281) T 3i7a_A 118 VWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALP--------VLTEAEAHP------EMFTTIEH-LR 182 (281) T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHH--------HHHHHHHCG------GGCCCHHH-HH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHH------HHCCHHHH-HH T ss_conf 9999999999999999997220454323289999988775301888--------988868777------65454899-99 Q ss_pred CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHH Q ss_conf 146701000247888776347577886444552100145776676-402231336673217986565544321 Q gi|254780286|r 147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH-IHGLSLANFASLEGQVAAIADDIAYDA 218 (410) Q Consensus 147 ~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~slEa~iveaADDIAY~~ 218 (410) .-+.-+.+.+++.+.-.|...+. +.+... -............+.++.+|+.+|-.. T Consensus 183 -----~~~g~~h~~ig~~l~~~W~lp~~-----------i~~~i~~hh~~~~~~~~~~l~~iv~lA~~~~~~~ 239 (281) T 3i7a_A 183 -----SLVRKMQGPIGRAVLKSWDFAPE-----------VMEVVERWADLPYLGDHVSYLDFIRAAAFYTGEL 239 (281) T ss_dssp -----HHHHHHHHHHHHHHHHHTTCCHH-----------HHHHHHHTTCTTCCCSSCCHHHHHHHHHHHHTSS T ss_pred -----HHHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC T ss_conf -----99743478899999997598999-----------9999998748443676425999999999998662 No 40 >2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A* Probab=87.95 E-value=0.51 Score=25.61 Aligned_cols=38 Identities=21% Similarity=0.358 Sum_probs=31.6 Q ss_pred CCCHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHCC Q ss_conf 66208889999999999988------399988999999888628 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARA------LRIDEDLVEAIALAHDFG 109 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~------l~~~~dlvea~~L~HDiG 109 (410) -|=-.||..||.+|--|+.. .++|.+-|-..||.||++ T Consensus 30 EsVAeHs~~va~ia~~la~~~~~~~~~~vd~~k~~~maL~HDl~ 73 (201) T 2paq_A 30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDAS 73 (201) T ss_dssp CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTT T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 66999999999999999988887536788999999999971169 No 41 >3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1} Probab=86.67 E-value=0.53 Score=25.53 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=32.0 Q ss_pred CCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCC Q ss_conf 62088899999999999883--99988999999888628 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARAL--RIDEDLVEAIALAHDFG 109 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~l--~~~~dlvea~~L~HDiG 109 (410) |=-.||..||-+|-.++... ++|.+=|-..||.||++ T Consensus 40 svAeHS~~~a~~a~~la~~~~~~vd~~k~~~maL~HDl~ 78 (200) T 3kh1_A 40 NDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIV 78 (200) T ss_dssp EHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTT T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH T ss_conf 699999999999999887726778999999999996799 No 42 >3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Probab=84.93 E-value=0.6 Score=25.12 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=14.9 Q ss_pred HHHHHHHHHHHHHHHHHHHCCH Q ss_conf 6554432120798998753067 Q gi|254780286|r 211 ADDIAYDAHDIDDGVRAGLLTV 232 (410) Q Consensus 211 ADDIAY~~hDlEDai~~gli~~ 232 (410) ++.|-.+...|=||+-..++.- T Consensus 289 ~~~i~vs~~gLReGll~~~l~~ 310 (508) T 3hi0_A 289 PAKIAFSAQGVREGYLYSLLTE 310 (508) T ss_dssp CSEEEECSCCHHHHHHHTTSCH T ss_pred CCEEEECCCCHHHHHHHHHHHH T ss_conf 9989988985889999998644 No 43 >1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Probab=82.61 E-value=1.4 Score=22.38 Aligned_cols=20 Identities=10% Similarity=0.207 Sum_probs=9.8 Q ss_pred HHHHHHHHHHHHHHHHHHHC Q ss_conf 65544321207989987530 Q gi|254780286|r 211 ADDIAYDAHDIDDGVRAGLL 230 (410) Q Consensus 211 ADDIAY~~hDlEDai~~gli 230 (410) ++.|-.+...|=||+-..++ T Consensus 287 ~~~i~vs~~glREGll~~~~ 306 (513) T 1u6z_A 287 IRELRLSDGALREGVLYEME 306 (513) T ss_dssp CSCBEECSCCHHHHHHHHHH T ss_pred CCEEEECCCCHHHHHHHHHH T ss_conf 99899899827899999977 No 44 >1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} SCOP: a.211.1.1 PDB: 1yoy_A Probab=81.33 E-value=2.1 Score=21.10 Aligned_cols=38 Identities=24% Similarity=0.147 Sum_probs=29.3 Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCH-HH--HHHHHHHHHCC Q ss_conf 6620888999999999998839998-89--99999888628 Q gi|254780286|r 72 RTRLMHTIEVSQIARSLARALRIDE-DL--VEAIALAHDFG 109 (410) Q Consensus 72 rtRLtHslEVa~i~rsi~~~l~~~~-dl--vea~~L~HDiG 109 (410) -|=-.||.-||-+|-.|+...+.+. |+ |=..||.||++ T Consensus 37 EsVAeHs~r~A~ia~~la~~~~~~~~d~~k~~~maL~HDl~ 77 (173) T 1ynb_A 37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLH 77 (173) T ss_dssp CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH T ss_conf 76899999999999998877388500299999999998989 No 45 >1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A* Probab=80.82 E-value=0.39 Score=26.47 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=16.0 Q ss_pred CCCCCCHHHHHHHHHHHHHHHH Q ss_conf 8706620888999999999998 Q gi|254780286|r 69 DHYRTRLMHTIEVSQIARSLAR 90 (410) Q Consensus 69 d~~rtRLtHslEVa~i~rsi~~ 90 (410) --+|| -.|...|.|-.-.|-. T Consensus 81 nPYHN-~~HA~dV~q~~~~lL~ 101 (420) T 1so2_A 81 IPYHN-RIHATDVLHAVWYLTT 101 (420) T ss_dssp CSSSS-HHHHHHHHHHHHHHTT T ss_pred CCCCC-HHHHHHHHHHHHHHHH T ss_conf 99817-8899999999999995 No 46 >1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, manganese, GDP, PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8 Probab=79.66 E-value=1.6 Score=22.02 Aligned_cols=57 Identities=25% Similarity=0.240 Sum_probs=38.5 Q ss_pred CCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC Q ss_conf 0001102734623275747871699987066208889999999999988399988999999888628 Q gi|254780286|r 43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 (410) Q Consensus 43 D~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiG 109 (410) |.+.|--.-.|-+-.+.-|+-..++ .+ .+|.++||.+= + .++++++.+ +|||.||.= T Consensus 24 d~~~i~kA~~fA~~~H~gQ~RksGe-py----i~Hp~~VA~iL---a-~l~~D~~ti-~AaLLHDvv 80 (393) T 1vj7_A 24 DAAFVKKALDYATAAHFYQVRKSGE-PY----IVHPIQVAGIL---A-DLHLDAVTV-ACGFLHDVV 80 (393) T ss_dssp HHHHHHHHHHHHHHHTTTCBCTTSC-BT----THHHHHHHHHH---H-HTTCCHHHH-HHHHHTTHH T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CH----HHHHHHHHHHH---H-HHCCCHHHH-HHHHHHCHH T ss_conf 8999999999999996789489998-38----99999999999---8-849999999-999822438 No 47 >3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii} Probab=77.11 E-value=3 Score=19.92 Aligned_cols=90 Identities=16% Similarity=0.269 Sum_probs=44.2 Q ss_pred CCHHHHHHHHHHHHHHHHH-------------CCCCH----HHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHH---CCC Q ss_conf 6208889999999999988-------------39998----89999998886289--98865478999999731---255 Q gi|254780286|r 73 TRLMHTIEVSQIARSLARA-------------LRIDE----DLVEAIALAHDFGH--PPFGHVGEDVLQELLSS---YGG 130 (410) Q Consensus 73 tRLtHslEVa~i~rsi~~~-------------l~~~~----dlvea~~L~HDiGh--pPFGH~GE~al~~~~~~---~~g 130 (410) |=..|+..|+.+...|... ++++. +++.-+|+-||||= |-|- +....+ ... T Consensus 16 tL~eH~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~HD~GK~~~~FQ-------~~~~~~~~~~~~ 88 (244) T 3m5f_A 16 SLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKIYQ-------RAIINDQEKLMG 88 (244) T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHTTGGGGBHHHH-------HHHHCTTSCCSS T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH-------HHHHCCCCCCCC T ss_conf 5999999999999999998769999999986026888999999999999811100249999-------988526777878 Q ss_pred CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC Q ss_conf 45776577887543211467010002478887763475778 Q gi|254780286|r 131 FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPI 171 (410) Q Consensus 131 FegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~ 171 (410) ..|+.-|--++..+-.+..... .+-..+.-+|+.|-++. T Consensus 89 ~~H~~~s~~~~~~~~~~~~~~~--~~~~~~~~~v~~HH~~l 127 (244) T 3m5f_A 89 FRHELVSAYYTYHILLKKFGDK--NLAFIGALTVMLHHEPI 127 (244) T ss_dssp CCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHTTTSCC T ss_pred CCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCCC T ss_conf 9869999999999988622257--89999999998668762 No 48 >1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3 Probab=70.83 E-value=1.9 Score=21.36 Aligned_cols=42 Identities=12% Similarity=-0.009 Sum_probs=29.0 Q ss_pred CCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCC Q ss_conf 0662088899999999999883-99988999999888628998 Q gi|254780286|r 71 YRTRLMHTIEVSQIARSLARAL-RIDEDLVEAIALAHDFGHPP 112 (410) Q Consensus 71 ~rtRLtHslEVa~i~rsi~~~l-~~~~dlvea~~L~HDiGhpP 112 (410) ...-..||..+|..++.++... +.+++.+-++||.||||-.. T Consensus 122 ~~~~w~~s~~~a~~~~~~~~~~~~~~~~~a~~aGLLhdiG~l~ 164 (297) T 1vqr_A 122 TQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVI 164 (297) T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH T ss_conf 9999999999999999998761554799999978887504999 No 49 >3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens} Probab=68.34 E-value=3.6 Score=19.35 Aligned_cols=56 Identities=25% Similarity=0.248 Sum_probs=30.6 Q ss_pred CEEECCHHHHHHCCCCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHC Q ss_conf 011027346232757478716-99987066208889999999999988399-98899999988862 Q gi|254780286|r 45 DRMIHTTAFRRLKDKTQVFFH-RQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDF 108 (410) Q Consensus 45 dRIi~S~afRRL~~KTQVf~~-~~~d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDi 108 (410) .+|.-.-.|-.-.+.-|.-.- ...-+ ++|-++||.+-.. ..+. +++ +-+|||.||+ T Consensus 5 ~~l~~A~~~A~~~H~gQ~Rk~~~g~PY----i~H~~~VA~il~~---~~~~~d~~-~i~AalLHD~ 62 (178) T 3nr1_A 5 AQLLEAADFAARKHRQQRRKDPEGTPY----INHPIGVARILTH---EAGITDIV-VLQAALLHDT 62 (178) T ss_dssp HHHHHHHHHHHHHTTTCBCSSTTCCBT----THHHHHHHHHHHH---TSCCCCHH-HHHHHHHTTH T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHHHHHHHHHH---HCCCCCHH-HHHHHHHHHH T ss_conf 999999999999974897889999959----9999999999998---54888799-9999998678 No 50 >3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster} Probab=66.97 E-value=2.9 Score=20.03 Aligned_cols=56 Identities=29% Similarity=0.281 Sum_probs=31.4 Q ss_pred EEECCHHHHHHCCCCEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC Q ss_conf 1102734623275747871699-98706620888999999999998839998899999988862 Q gi|254780286|r 46 RMIHTTAFRRLKDKTQVFFHRQ-RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDF 108 (410) Q Consensus 46 RIi~S~afRRL~~KTQVf~~~~-~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDi 108 (410) |++---.|-.-.++-|.--.++ .-+ .+|.++||.+-... ....+++ +-+|||.||+ T Consensus 8 k~~~A~~~A~~~H~gq~rk~g~~~PY----i~Hp~~Va~il~~~--~~~~d~~-~i~AalLHDv 64 (179) T 3nqw_A 8 KFMECLQYAAFKHRQQRRKDPQETPY----VNHVINVSTILSVE--ACITDEG-VLMAALLHDV 64 (179) T ss_dssp HHHHHHHHHHHHSTTCBCSSSSCCBT----HHHHHHHHHHHHTT--TCCCCHH-HHHHHHTTTH T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHHHHHHHHHHH--CCCCCHH-HHHHHHHCCH T ss_conf 99999999999875881778999848----98999999999984--0369899-9999993351 No 51 >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 Probab=47.58 E-value=3.8 Score=19.21 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=5.4 Q ss_pred CCCCCCCCCHHHH Q ss_conf 2554577657788 Q gi|254780286|r 128 YGGFDHNIQSFRI 140 (410) Q Consensus 128 ~~gFegNaQ~~Ri 140 (410) +.|.|-|..+.++ T Consensus 214 ~~G~E~~~~~~~l 226 (541) T 2ar0_A 214 FIGLELVPGTRRL 226 (541) T ss_dssp EEEEESCHHHHHH T ss_pred HHHHHCCHHHHHH T ss_conf 6302066999999 No 52 >2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum} Probab=43.97 E-value=3.4 Score=19.50 Aligned_cols=22 Identities=32% Similarity=0.940 Sum_probs=17.5 Q ss_pred HHHCCCCCCCCCHHHH-----HHHHHH Q ss_conf 8862899886547899-----999973 Q gi|254780286|r 105 AHDFGHPPFGHVGEDV-----LQELLS 126 (410) Q Consensus 105 ~HDiGhpPFGH~GE~a-----l~~~~~ 126 (410) +||=|||-|||.|+|+ ++.+++ T Consensus 362 ghd~~~~~~~~~~~~~gg~~~~~~l~~ 388 (1376) T 2zxq_A 362 GHDSGHPDYGDIGQRLGGADDMNTMME 388 (1376) T ss_dssp STTSSTTCTTCBCGGGTHHHHHHHHHH T ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHH T ss_conf 866688750001434641899999998 No 53 >2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} SCOP: a.211.1.1 Probab=43.93 E-value=13 Score=15.27 Aligned_cols=76 Identities=24% Similarity=0.296 Sum_probs=41.3 Q ss_pred HHHCCCCEEECCHHH-HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH Q ss_conf 434000011027346-2327574787169998706620888999999999998839998899999988862899886547 Q gi|254780286|r 39 EFQRDRDRMIHTTAF-RRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG 117 (410) Q Consensus 39 ~f~rD~dRIi~S~af-RRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~G 117 (410) |..-+..=|=|+-|. -|-.+-| .+++.=+=--||+-|+++.+.+.. +.++... -+||.|| +- T Consensus 26 p~di~IeDIAh~Ls~~~R~~G~t------~~~~fySVAqHsvlv~~~~~~~~~--~~~~~~~-L~aLLHD--------A~ 88 (207) T 2gz4_A 26 PLDVEIADIAHGLARVARWNGQT------RGDHAFTVAQHCLIVETIFCRMCP--GATPDEM-QMALLHD--------AP 88 (207) T ss_dssp GGGCCHHHHHHHHTTCBSGGGCC------SSSSCCBHHHHHHHHHHHHHHHCT--TCCHHHH-HHHHTTT--------TT T ss_pred HHHCCHHHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHHCC--CCCHHHH-HHHHHCC--------CH T ss_conf 44486999999999874107866------898651199999999999998679--9998999-9998658--------78 Q ss_pred HHHHHHHHHHCCCC Q ss_conf 89999997312554 Q gi|254780286|r 118 EDVLQELLSSYGGF 131 (410) Q Consensus 118 E~al~~~~~~~~gF 131 (410) |.+++++-+-+..+ T Consensus 89 E~~~GD~~tP~K~~ 102 (207) T 2gz4_A 89 EYVIGDMISPFKSV 102 (207) T ss_dssp HHHHCCCCGGGGGT T ss_pred HHHHCCCCCHHHHH T ss_conf 98864667178998 No 54 >2rhk_A NS1, NS1A, non-structural protein 1; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Influenza a virus} PDB: 2kkz_A 3ee9_A 3ee8_A 2gx9_A 3m5r_A Probab=42.59 E-value=3.1 Score=19.85 Aligned_cols=33 Identities=30% Similarity=0.432 Sum_probs=25.6 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH Q ss_conf 654789999997312554577657788754321 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~ 146 (410) ||.+|++-+..=--.||+|-|-++.|+-..|+. T Consensus 85 GHt~eDvknAigvLIgGlEWndntvrvse~lQR 117 (140) T 2rhk_A 85 GHTIEDVKNAIGVLIGGLEWNDNTVRVSKTLQR 117 (140) T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCEEEECHHHHH T ss_pred CCCCHHHHHHHHHEECCEEECCCEEEHHHHHHH T ss_conf 986078887687644111566966764577888 No 55 >3l4q_A NS1, NS1A, non-structural protein 1; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Influenza a virus} Probab=40.66 E-value=4.2 Score=18.84 Aligned_cols=32 Identities=31% Similarity=0.508 Sum_probs=19.3 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 65478999999731255457765778875432 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) ||.+|++-+..=--.||+|-|-++.|+-..|+ T Consensus 102 GHt~eDVknAigvLIgGlEWndNtvrvse~lQ 133 (164) T 3l4q_A 102 GHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQ 133 (164) T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH T ss_pred CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH T ss_conf 98617887768754411156696675457788 No 56 >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} Probab=40.18 E-value=5.7 Score=17.85 Aligned_cols=13 Identities=15% Similarity=0.330 Sum_probs=6.7 Q ss_pred CCCCCCCCHHHHH Q ss_conf 5545776577887 Q gi|254780286|r 129 GGFDHNIQSFRIV 141 (410) Q Consensus 129 ~gFegNaQ~~Ril 141 (410) .|.|=|..+.++. T Consensus 252 ~G~e~~~~~~~la 264 (542) T 3lkd_A 252 FGQELNTSTYNLA 264 (542) T ss_dssp EEEESCHHHHHHH T ss_pred EEEECCHHHHHHH T ss_conf 7442667999999 No 57 >3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3kwi_A 3kwg_A Probab=38.70 E-value=4.7 Score=18.48 Aligned_cols=32 Identities=31% Similarity=0.457 Sum_probs=25.3 Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH Q ss_conf 65478999999731255457765778875432 Q gi|254780286|r 114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 (410) Q Consensus 114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE 145 (410) ||..|++-+..=--.||+|-|-++.|+-..|+ T Consensus 96 GHt~edvknAigvLIgGleWNdNtvrvse~lQ 127 (158) T 3d6r_B 96 GHSTEDVKNAIGILIGGLEWNDNSIRASENIQ 127 (158) T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH T ss_pred CCCCHHHHHHHHHEECCEEECCCEEEHHHHHH T ss_conf 98707877668754410156596675667788 No 58 >1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3 Probab=37.04 E-value=12 Score=15.57 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=14.9 Q ss_pred HHHHHHHHHCCCCCCCCCHHHHHHHH Q ss_conf 99999888628998865478999999 Q gi|254780286|r 99 VEAIALAHDFGHPPFGHVGEDVLQEL 124 (410) Q Consensus 99 vea~~L~HDiGhpPFGH~GE~al~~~ 124 (410) +.| .|.+ .|.||.+|..-..+..+ T Consensus 42 lKA-ll~~-~g~~pk~H~l~~l~~~l 65 (127) T 1ufb_A 42 LKG-LHLA-RGQVAWGHSILDLLADL 65 (127) T ss_dssp HHH-HHHH-TTCCCCSSCHHHHHHTS T ss_pred HHH-HHHH-CCCCCCCCCHHHHHHHH T ss_conf 999-9998-59999873599999989 No 59 >3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase domain, cell WALL; 2.90A {Streptococcus pneumoniae} Probab=36.78 E-value=5.2 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.781 Sum_probs=14.0 Q ss_pred HHHCCCCCCCCCHHHH Q ss_conf 8862899886547899 Q gi|254780286|r 105 AHDFGHPPFGHVGEDV 120 (410) Q Consensus 105 ~HDiGhpPFGH~GE~a 120 (410) +||=|||-+||.|+++ T Consensus 620 GHDSahpdY~~~~~Ra 635 (1531) T 3ecq_A 620 GHDSGHLNYADIGKRI 635 (1531) T ss_dssp STTSSTTCTTCBCGGG T ss_pred CCCCCCCCHHHCCCCC T ss_conf 8666896410014446 No 60 >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Probab=34.45 E-value=8.1 Score=16.76 Aligned_cols=21 Identities=0% Similarity=-0.282 Sum_probs=15.6 Q ss_pred CHHHHHHCCCCEEEECCCCCC Q ss_conf 734623275747871699987 Q gi|254780286|r 50 TTAFRRLKDKTQVFFHRQRDH 70 (410) Q Consensus 50 S~afRRL~~KTQVf~~~~~d~ 70 (410) ..+++|+..+.+++..+-+.. T Consensus 55 ~~~~~~~~~~~~i~G~did~~ 75 (421) T 2ih2_A 55 RAFREAHGTAYRFVGVEIDPK 75 (421) T ss_dssp HHHHHHHCSCSEEEEEESCTT T ss_pred HHHHHHCCCCCEEEEEECCHH T ss_conf 999986776786999979899 No 61 >2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae} Probab=30.96 E-value=17 Score=14.38 Aligned_cols=23 Identities=30% Similarity=0.626 Sum_probs=20.0 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 28998865478999999731255 Q gi|254780286|r 108 FGHPPFGHVGEDVLQELLSSYGG 130 (410) Q Consensus 108 iGhpPFGH~GE~al~~~~~~~~g 130 (410) |||-|+-..-|+-|.+.|..+|. T Consensus 15 V~nlp~~~~te~~l~~~F~~~G~ 37 (96) T 2kvi_A 15 IGNLPLKNVSKEDLFRIFSPYGH 37 (96) T ss_dssp EESSTTSCCCHHHHHHHHTTTCC T ss_pred EECCCCCCCCHHHHHHHHHHCCC T ss_conf 93599687899999999987098 No 62 >1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1 Probab=27.67 E-value=23 Score=13.46 Aligned_cols=16 Identities=38% Similarity=0.576 Sum_probs=9.8 Q ss_pred ECCCCHHHHHHHHHHH Q ss_conf 0673369999999998 Q gi|254780286|r 380 LAGMTDSYAIREHHIL 395 (410) Q Consensus 380 IAGMTD~YAi~ly~kL 395 (410) .+|+||..|.+.|... T Consensus 5 ~sGLT~~EA~EfH~~f 20 (45) T 1lgh_B 5 LSGLTEEEAIAVHDQF 20 (45) T ss_dssp SSSCCHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHH T ss_conf 6889999999999999 No 63 >2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A* Probab=24.91 E-value=25 Score=13.19 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=16.2 Q ss_pred CCCHHHHHHHHHHHHCCCCCC Q ss_conf 999889999998886289988 Q gi|254780286|r 93 RIDEDLVEAIALAHDFGHPPF 113 (410) Q Consensus 93 ~~~~dlvea~~L~HDiGhpPF 113 (410) +.++|=.+-+||.||+|--.+ T Consensus 114 ~p~~dW~qL~GLiHDLGKvl~ 134 (289) T 2huo_A 114 HPDKDWFHLVGLLHDLGKIMA 134 (289) T ss_dssp CTTCHHHHHHHHHTTGGGGGG T ss_pred CCCCCHHHHHHHHHHHHHHHH T ss_conf 899106775657755324642 No 64 >3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A Probab=24.21 E-value=9.6 Score=16.22 Aligned_cols=11 Identities=27% Similarity=0.537 Sum_probs=8.9 Q ss_pred CCCHHHHHHHH Q ss_conf 00024788877 Q gi|254780286|r 153 GINLTWETLEG 163 (410) Q Consensus 153 GLNLT~atL~~ 163 (410) ||+.--||+.| T Consensus 51 gldie~at~~g 61 (215) T 3eu6_A 51 GLDIETATRAG 61 (215) T ss_dssp TCCHHHHHHHH T ss_pred CCCHHHHHHHH T ss_conf 52405877777 No 65 >3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A* Probab=22.29 E-value=28 Score=12.76 Aligned_cols=11 Identities=36% Similarity=0.277 Sum_probs=4.6 Q ss_pred HHHHHHHCCHH Q ss_conf 89987530677 Q gi|254780286|r 223 DGVRAGLLTVD 233 (410) Q Consensus 223 Dai~~gli~~~ 233 (410) |-..+|++=++ T Consensus 203 DiwSlGvilye 213 (327) T 3a62_A 203 DWWSLGALMYD 213 (327) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 72326899999 No 66 >1o3u_A Conserved hypothetical protein TM0613; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.75A {Thermotoga maritima} SCOP: a.24.16.3 Probab=21.75 E-value=29 Score=12.69 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=11.5 Q ss_pred HHHHHCCCCCCCCCHHHHHHHH Q ss_conf 9888628998865478999999 Q gi|254780286|r 103 ALAHDFGHPPFGHVGEDVLQEL 124 (410) Q Consensus 103 ~L~HDiGhpPFGH~GE~al~~~ 124 (410) .|... |-||.+|.-..-++.+ T Consensus 50 ll~~~-g~~pktH~l~~L~~~l 70 (135) T 1o3u_A 50 VFQRM-GAQAWGYSVPDFLGEL 70 (135) T ss_dssp HHHHH-TCCCCCSSHHHHHHHH T ss_pred HHHHC-CCCCCCCCHHHHHHHH T ss_conf 99985-9999777799999999 No 67 >1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A Probab=21.15 E-value=29 Score=12.60 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=19.2 Q ss_pred CCCCCCCCCHHHHHHHHHHHCCC Q ss_conf 28998865478999999731255 Q gi|254780286|r 108 FGHPPFGHVGEDVLQELLSSYGG 130 (410) Q Consensus 108 iGhpPFGH~GE~al~~~~~~~~g 130 (410) |||-|++..=|+.|.++|..+|. T Consensus 32 V~nL~~~~~te~~l~~~F~~~G~ 54 (110) T 1wf1_A 32 IGNLNTALVKKSDVETIFSKYGR 54 (110) T ss_dssp ECSCCCSSCCHHHHHHHHGGGSC T ss_pred EECCCCCCCCHHHHHHHHHHCCC T ss_conf 97999464999999999870598 No 68 >1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A Probab=21.10 E-value=23 Score=13.46 Aligned_cols=35 Identities=26% Similarity=0.348 Sum_probs=14.9 Q ss_pred CCCHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHH Q ss_conf 6620888999999999-----9988399988999999888 Q gi|254780286|r 72 RTRLMHTIEVSQIARS-----LARALRIDEDLVEAIALAH 106 (410) Q Consensus 72 rtRLtHslEVa~i~rs-----i~~~l~~~~dlvea~~L~H 106 (410) |.-||--+.-|-..++ ||..+|+++.-|-++||+. T Consensus 11 r~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ 50 (156) T 1dw9_A 11 RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQ 50 (156) T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTS T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC T ss_conf 8999999999999849999999999797999999998457 Done!