Query         gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 410
No_of_seqs    191 out of 1457
Neff          8.0 
Searched_HMMs 23785
Date          Tue May 24 15:14:40 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780286.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 2dqb_A Deoxyguanosinetriphosph 100.0       0       0  909.5  25.9  366    8-396    10-375 (376)
  2 3bg2_A DGTP triphosphohydrolas 100.0       0       0  836.2  22.7  370   20-399    12-442 (444)
  3 2pgs_A Putative deoxyguanosine 100.0       0       0  831.5  17.3  378   12-401     4-444 (451)
  4 2hek_A Hypothetical protein; p 100.0 3.1E-35 1.3E-39  278.6   1.7  108   39-146    14-124 (371)
  5 3irh_A HD domain protein; phos  99.8 8.8E-19 3.7E-23  156.9  13.4  101   34-146    42-166 (480)
  6 2q14_A Phosphohydrolase; BT420  99.7 2.4E-16   1E-20  139.0  11.7   93   45-147    25-131 (410)
  7 2o08_A BH1327 protein; putativ  98.9 2.9E-09 1.2E-13   86.6   6.1  122   59-215     4-131 (188)
  8 2ogi_A Hypothetical protein SA  98.3 5.5E-05 2.3E-09   54.9  15.1  105   72-215    25-139 (196)
  9 3ccg_A HD superfamily hydrolas  98.2 2.5E-05   1E-09   57.5  11.5  106   73-216    19-134 (190)
 10 2pq7_A Predicted HD superfamil  97.7 9.5E-05   4E-09   53.2   6.8   99   74-214    34-134 (220)
 11 3djb_A Hydrolase, HD family; a  97.6 6.6E-05 2.8E-09   54.4   5.5   51   68-118    20-70  (223)
 12 3dto_A BH2835 protein; all alp  97.6 0.00014 5.8E-09   52.0   7.2   46   73-118    25-70  (223)
 13 3gw7_A Uncharacterized protein  97.6 7.6E-05 3.2E-09   53.9   4.9   45   73-117    25-69  (239)
 14 3b57_A LIN1889 protein; Q92AN1  97.3 0.00047   2E-08   48.1   6.4   46   73-118    25-70  (209)
 15 2qgs_A Protein Se1688; alpha-h  97.3 0.00067 2.8E-08   46.9   6.7   50   69-118    21-71  (225)
 16 2pjq_A Uncharacterized protein  97.0  0.0014 5.9E-08   44.6   6.5   46   68-113    25-70  (231)
 17 3m1t_A Putative phosphohydrola  96.7 0.00079 3.3E-08   46.4   2.8  131   68-221   100-231 (275)
 18 3hc1_A Uncharacterized HDOD do  96.4  0.0015 6.1E-08   44.4   2.9  135   63-217   107-243 (305)
 19 3mem_A Putative signal transdu  94.6   0.061 2.6E-06   32.5   5.7   68   40-116    25-94  (457)
 20 3dyn_A High affinity CGMP-spec  94.2   0.028 1.2E-06   34.9   3.2   73   70-143    73-158 (329)
 21 3ljx_A MMOQ response regulator  94.0   0.036 1.5E-06   34.2   3.3   84   75-171   110-194 (288)
 22 3kq5_A Hypothetical cytosolic   93.7  0.0048   2E-07   40.6  -1.5   71   36-111    43-118 (393)
 23 1tbf_A CGMP-specific 3',5'-cyc  92.8   0.087 3.6E-06   31.3   3.7   73   70-143    99-184 (347)
 24 1f0j_A PDE4B, phosphodiesteras  92.0    0.07 2.9E-06   32.0   2.5   44   70-114    81-131 (377)
 25 3bjc_A CGMP-specific 3',5'-cyc  91.8    0.15 6.2E-06   29.6   3.9   20  384-403   824-843 (878)
 26 3itu_A CGMP-dependent 3',5'-cy  91.8     0.1 4.2E-06   30.9   3.0   44   70-114    80-130 (345)
 27 3ibj_A CGMP-dependent 3',5'-cy  91.6    0.13 5.5E-06   30.0   3.5   24  382-405   648-671 (691)
 28 3hr1_A CAMP and CAMP-inhibited  91.5    0.17 7.2E-06   29.1   4.0   47   69-118   108-159 (380)
 29 2r8q_A Class I phosphodiestera  91.3    0.13 5.3E-06   30.1   3.1   72   69-143    97-186 (359)
 30 3ecm_A High affinity CAMP-spec  91.2   0.047   2E-06   33.3   0.8   71   70-143    73-158 (338)
 31 1y2k_A DPDE3, PDE43, CAMP-spec  91.1     0.1 4.4E-06   30.7   2.5   45   70-115    94-145 (349)
 32 1zkl_A HCP1, TM22, high-affini  90.8   0.051 2.2E-06   33.0   0.8   70   70-142    81-165 (353)
 33 1taz_A Calcium/calmodulin-depe  90.4    0.19 8.2E-06   28.7   3.4  151   70-229    80-245 (365)
 34 3g4g_A DPDE3, PDE43, CAMP-spec  90.2    0.15 6.5E-06   29.5   2.8   42   71-113   161-209 (421)
 35 2cqz_A 177AA long hypothetical  90.1    0.36 1.5E-05   26.7   4.6   37   73-109    32-73  (177)
 36 1xx7_A Oxetanocin-like protein  89.7     0.4 1.7E-05   26.4   4.6   37   73-109    37-78  (184)
 37 2our_A CAMP and CAMP-inhibited  89.4    0.19 8.2E-06   28.7   2.8   51   68-119    76-131 (331)
 38 3mzo_A LIN2634 protein; HD-dom  89.2    0.53 2.2E-05   25.5   4.9   42   68-109    25-71  (216)
 39 3i7a_A Putative metal-dependen  88.2     1.3 5.4E-05   22.7  12.3  114   74-218   118-239 (281)
 40 2paq_A 5'-deoxynucleotidase YF  88.0    0.51 2.2E-05   25.6   4.1   38   72-109    30-73  (201)
 41 3kh1_A Predicted metal-depende  86.7    0.53 2.2E-05   25.5   3.6   37   73-109    40-78  (200)
 42 3hi0_A Putative exopolyphospha  84.9     0.6 2.5E-05   25.1   3.2   22  211-232   289-310 (508)
 43 1u6z_A Exopolyphosphatase; alp  82.6     1.4 5.9E-05   22.4   4.3   20  211-230   287-306 (513)
 44 1ynb_A Hypothetical protein AF  81.3     2.1 8.8E-05   21.1   4.8   38   72-109    37-77  (173)
 45 1so2_A CGMP-inhibited 3',5'-cy  80.8    0.39 1.7E-05   26.5   0.9   21   69-90     81-101 (420)
 46 1vj7_A Bifunctional RELA/SPOT;  79.7     1.6 6.6E-05   22.0   3.7   57   43-109    24-80  (393)
 47 3m5f_A Metal dependent phospho  77.1       3 0.00013   19.9   4.5   90   73-171    16-127 (244)
 48 1vqr_A Hypothetical protein CJ  70.8     1.9 8.1E-05   21.4   2.3   42   71-112   122-164 (297)
 49 3nr1_A HD domain-containing pr  68.3     3.6 0.00015   19.4   3.2   56   45-108     5-62  (178)
 50 3nqw_A CG11900; stringent resp  67.0     2.9 0.00012   20.0   2.5   56   46-108     8-64  (179)
 51 2ar0_A M.ecoki, type I restric  47.6     3.8 0.00016   19.2   0.4   13  128-140   214-226 (541)
 52 2zxq_A Endo-alpha-N-acetylgala  44.0     3.4 0.00014   19.5  -0.3   22  105-126   362-388 (1376)
 53 2gz4_A Hypothetical protein AT  43.9      13 0.00054   15.3   3.1   76   39-131    26-102 (207)
 54 2rhk_A NS1, NS1A, non-structur  42.6     3.1 0.00013   19.8  -0.7   33  114-146    85-117 (140)
 55 3l4q_A NS1, NS1A, non-structur  40.7     4.2 0.00018   18.8  -0.2   32  114-145   102-133 (164)
 56 3lkd_A Type I restriction-modi  40.2     5.7 0.00024   17.9   0.4   13  129-141   252-264 (542)
 57 3d6r_B NS1, NS1A, non-structur  38.7     4.7  0.0002   18.5  -0.2   32  114-145    96-127 (158)
 58 1ufb_A TT1696 protein; structu  37.0      12 0.00049   15.6   1.5   24   99-124    42-65  (127)
 59 3ecq_A Protein SPR0328, endo-a  36.8     5.2 0.00022   18.2  -0.3   16  105-120   620-635 (1531)
 60 2ih2_A Modification methylase   34.4     8.1 0.00034   16.8   0.4   21   50-70     55-75  (421)
 61 2kvi_A Nuclear polyadenylated   31.0      17 0.00071   14.4   1.6   23  108-130    15-37  (96)
 62 1lgh_B LH II, B800/850, light   27.7      23 0.00095   13.5   1.9   16  380-395     5-20  (45)
 63 2huo_A Inositol oxygenase; pro  24.9      25   0.001   13.2   1.5   21   93-113   114-134 (289)
 64 3eu6_A NS1, nonstructural prot  24.2     9.6  0.0004   16.2  -0.7   11  153-163    51-61  (215)
 65 3a62_A Ribosomal protein S6 ki  22.3      28  0.0012   12.8   3.9   11  223-233   203-213 (327)
 66 1o3u_A Conserved hypothetical   21.7      29  0.0012   12.7   2.9   21  103-124    50-70  (135)
 67 1wf1_A RNA-binding protein RAL  21.1      29  0.0012   12.6   2.6   23  108-130    32-54  (110)
 68 1dw9_A Cyanate lyase; cyanate   21.1      23 0.00095   13.5   0.7   35   72-106    11-50  (156)

No 1  
>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8}
Probab=100.00  E-value=0  Score=909.52  Aligned_cols=366  Identities=40%  Similarity=0.610  Sum_probs=333.6

Q ss_pred             CCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             67864658543870333773477888999984340000110273462327574787169998706620888999999999
Q gi|254780286|r    8 GFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARS   87 (410)
Q Consensus         8 ~~~~~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rs   87 (410)
                      .++.+.++|||+++.+++||.+||+++++||||+|||||||||+||||||+||||||+.+||||||||||||||||||||
T Consensus        10 ~~~~~~l~~~a~~~~~~~~R~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLTHslEVa~i~rs   89 (376)
T 2dqb_A           10 ELEASRLAPYAQKARDTRGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLTHTLEVAQVSRS   89 (376)
T ss_dssp             HHHHHHSCTTSCCGGGCCCCSSCCCCCSSCCHHHHHHHHHHHSHHHHHGGGSCSSSCSCC--CCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCHHHCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHCCHHHHCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf             88875248854696020388878999999981431404887278776145688263079998537767899999999999


Q ss_pred             HHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCC
Q ss_conf             99883999889999998886289988654789999997312554577657788754321146701000247888776347
Q gi|254780286|r   88 LARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGH  167 (410)
Q Consensus        88 i~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKy  167 (410)
                      ||+.+|+|++||||||||||||||||||+||+||++||+++||||||||||||||+||.+++.++||||||+||+|++||
T Consensus        90 i~~~l~~~~~lvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQslRilt~Le~~~~~~~GlnLT~~tl~~i~K~  169 (376)
T 2dqb_A           90 IARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALMQDHGGFEHNAQALRILTHLEVRYPGFRGLNLTYEVLEGIATH  169 (376)
T ss_dssp             HHHHTTCCHHHHHHHHHHTTTTCCSSTTHHHHHHHHHTTTTTCCCHHHHHHHHHHTTCBCBTTBSBCCCCHHHHHHHHHS
T ss_pred             HHHHHCCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCC
T ss_conf             99997547333788886034689987506999999987605898545367787564104688989864647665455403


Q ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf             57788644455210014577667640223133667321798656554432120798998753067763001566888999
Q gi|254780286|r  168 NGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIAS  247 (410)
Q Consensus       168 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~  247 (410)
                      ||+..+...                  ......+++|||||||||||||++||||||+++|+|+++++.+++++.....+
T Consensus       170 ~~~~~~~~~------------------~~~~~~~tlEaqIme~ADDIAY~~hDlEDai~~gli~~~~l~e~~l~~~~~~~  231 (376)
T 2dqb_A          170 EAAYSPGFK------------------PLYEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALE  231 (376)
T ss_dssp             CC-----------------------------CCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCGGGGGGSHHHHHHHHH
T ss_pred             CCCCCCCHH------------------HHHHCCCCHHHHHHCCHHCCHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf             210042034------------------55533587789985541238553558888986699889998645899999998


Q ss_pred             HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCC
Q ss_conf             88654889989999999999999999978886787787515454676442685211147035799999999999985178
Q gi|254780286|r  248 LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRH  327 (410)
Q Consensus       248 ~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~  327 (410)
                      ......... ......+++.+++.+|.+++..+.+++........++++..+..++.+|+++....+.+|+|++++||+|
T Consensus       232 ~~~~~~~~~-~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~i~~~~~~l~~~s~~~~~~~~~lk~fl~~~vy~~  310 (376)
T 2dqb_A          232 EGLDLLRLP-ELDRRVLVRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGEEAEKALKALKAFLMERFYRH  310 (376)
T ss_dssp             TTCCTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf             744010231-5677899999874799989999999999821302899972520444311100000347899999999489


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHHHHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHH
Q ss_conf             999999999999999999999878884574106776602580000103020006733699999999981
Q gi|254780286|r  328 PSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILF  396 (410)
Q Consensus       328 ~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~  396 (410)
                      +.|+.++.+|++||..||+.|+++|+.||..|+..+    ++..+.|+||||||||||+||+++|++||
T Consensus       311 ~~v~~~e~~g~~iI~~Lf~~f~~~p~llp~~~~~~~----~~~~~~R~V~DYIAGMTD~yA~~ly~~L~  375 (376)
T 2dqb_A          311 PEVLRERRKAEAVLEGLFAAYTRYPELLPREVQAKI----PEEGLERAVCDYIAGMTDRFALEAYRRLS  375 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCGGGSCHHHHTTH----HHHCHHHHHHHHHHTCCHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHHHHC----CCCCHHHEEHHHHCCCHHHHHHHHHHHCC
T ss_conf             999999999999999999999859985999999646----66665623021021631779999999709


No 2  
>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217}
Probab=100.00  E-value=0  Score=836.18  Aligned_cols=370  Identities=24%  Similarity=0.317  Sum_probs=286.9

Q ss_pred             CHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----
Q ss_conf             7033377347788899998434000011027346232757478716999870662088899999999999883999----
Q gi|254780286|r   20 DPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRID----   95 (410)
Q Consensus        20 ~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~----   95 (410)
                      +...+.+|..++ ++++||||||||||||||+||||||+||||||+.+||||||||||||||||||||||+.|+++    
T Consensus        12 R~~~~~~~~~~~-~~~~R~~F~rDrdRIi~S~aFRRLq~KTQVf~~~~~D~~rtRLTHSlEVaqiaRsi~~~l~~~l~~~   90 (444)
T 3bg2_A           12 RQGDTAKRLRIE-QDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVGRSLGRMVGKKLLEK   90 (444)
T ss_dssp             CTTCSSCCCGGG-CCGGGCHHHHHHHHHHHSHHHHHGGGCBCSCC---CCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCCCCCCCCC-CCCCCCCHHHCCCHHHCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             045655788888-8998980530301886689776255788250489998772830599999999999999999999874


Q ss_pred             ---------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC-----------------CCCCCCCHHHHHHH
Q ss_conf             ---------------8899999988862899886547899999973125-----------------54577657788754
Q gi|254780286|r   96 ---------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-----------------GFDHNIQSFRIVTE  143 (410)
Q Consensus        96 ---------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~-----------------gFegNaQ~~Rilt~  143 (410)
                                     +|||||||||||||||||||+||+||++||+++|                 |||||||||||||+
T Consensus        91 ~~~~~~~~~~~~~~~~~lvea~~LaHDiGhpPFGH~GE~aL~~~~~~~~~~~~~~~~~~~~~~d~~gFegNaQslRIlt~  170 (444)
T 3bg2_A           91 YPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEFFKNGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQ  170 (444)
T ss_dssp             STHHHHTTCCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHTSGGGGGGGGSCHHHHHHHHTCCHHHHHHHHHHC
T ss_pred             CCCHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf             80033312344431588999863035458898630059999999984278411101019988763122551788899876


Q ss_pred             HHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCC------CCCCCH---HHHHHHHHHHCC-------CCCCCCCHHHHH
Q ss_conf             3211467010002478887763475778864445------521001---457766764022-------313366732179
Q gi|254780286|r  144 LECSYADFDGINLTWETLEGLIGHNGPILPQDLD------KPRIIP---RIFSDYYHIHGL-------SLANFASLEGQV  207 (410)
Q Consensus       144 LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~------~~~~~~---~~~~~~~~~~~~-------~~~~~~slEa~i  207 (410)
                      ++  +..++||||||+||+||+||||++.+....      +++.+.   ..+.+.....++       .....+++||||
T Consensus       171 l~--~~~~~GLNLT~~tL~gilKyp~~~~~~~~~~~~~~~k~g~~~~e~~~~~~i~~~~~l~~~~~~~~~~~~r~~eaqI  248 (444)
T 3bg2_A          171 SK--PGAQGGLRLSYATLGAFMKYPKESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYL  248 (444)
T ss_dssp             CB--TTBTTTTCCCHHHHHHHCSSCBCCC-----------CCSCCGGGHHHHHHHHHHHTCCBC----CCBBCCCTTHHH
T ss_pred             HC--CCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHH
T ss_conf             22--3777887578999999995575435677654445456563443789999998763132035311235578908999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             865655443212079899875306776300156688899988654889-9899999999999999999788867877875
Q gi|254780286|r  208 AAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHL-DDKRLVHELVRRQITAMVEDVITVSQKRIAH  286 (410)
Q Consensus       208 veaADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~~  286 (410)
                      |+|||||||++||||||+++|+|+++++.+..............+... ........+++..|+.+|.+++..+.++...
T Consensus       249 me~ADDIAY~~hDlEDai~~gli~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~I~~lI~~~i~~~~~~~~~  328 (444)
T 3bg2_A          249 VEAADDICYTIIDFEDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTLINESVDTFMKYEEE  328 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSSCC-------------------CCSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             99887766515039989753888799999999999866555666533246999999999999999999999999996788


Q ss_pred             HCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCHHHHH---
Q ss_conf             15454676442685211147035799999999999985178999999999999999999999878884574106776---
Q gi|254780286|r  287 LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEY---  363 (410)
Q Consensus       287 ~~~~~~~di~~~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l~~~~~~~~---  363 (410)
                      ....      ..+..++..+ +....++.||+|++++||++++|+.++.+|++||.+||+.|++.+...+..+....   
T Consensus       329 i~~~------~~~~~Li~~~-~~~~~~~~Lk~f~~~~vy~~~~v~~~e~~g~~iI~~Lf~~~~~~~~~~~~~~~~~~~~~  401 (444)
T 3bg2_A          329 ILAG------TFDQSLIDKS-NYQAQITDIINLSIERIYNSREVIEKEIAGYEILSTLLEARCRALDNNDTHYNQLIQQL  401 (444)
T ss_dssp             HHHT------CCCSCTGGGC-TTHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHH
T ss_pred             HHCC------CCCCCCCCCH-HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_conf             7347------6555533674-89999999999999984388999999999999999999999987763726699999986


Q ss_pred             -----HHCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCCC
Q ss_conf             -----602580000103020006733699999999981889
Q gi|254780286|r  364 -----ERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYI  399 (410)
Q Consensus       364 -----~~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~~  399 (410)
                           ....+.+.++|+||||||||||+||+++|++|+|+.
T Consensus       402 ~~~~~~~~~~~y~~~r~V~DYIAGMTD~yA~~~y~~L~Gi~  442 (444)
T 3bg2_A          402 LAPNDHSEKSLYENLIQICAEVSTMTDGKALRNYKKIKGLD  442 (444)
T ss_dssp             HC------CCHHHHHHHHHHHHHHSCHHHHHHHHHHHTTC-
T ss_pred             CCCCCCCCCCHHHHHCCHHEECCCCHHHHHHHHHHHHHCCC
T ss_conf             06542000373653340110523764989999999816878


No 3  
>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV}
Probab=100.00  E-value=0  Score=831.48  Aligned_cols=378  Identities=25%  Similarity=0.312  Sum_probs=286.9

Q ss_pred             CCCCCCCCCHHHCCCCCCCCCCCCCCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             46585438703337734778889999843400001102734623275747871699987066208889999999999988
Q gi|254780286|r   12 QKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARA   91 (410)
Q Consensus        12 ~~~~~~a~~~~~~~gR~~~e~~~~~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~   91 (410)
                      +|+--   .+.+..||.++++++++||||||||||||||+||||||+||||||+.+||||||||||||||||||||||+.
T Consensus         4 ~w~~l---l~~~r~~~~~~~~~~~~R~~f~rDr~RIi~S~afRRLq~KTQVf~~~~~d~~rtRLTHslEVaqi~rsia~~   80 (451)
T 2pgs_A            4 DWQTL---LNRERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEVSCVGRSLGMR   80 (451)
T ss_dssp             CTTTT---TCCCBC-------------CHHHHHHHHHHSHHHHGGGGCCCCCC-------CCHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHH---CCCCCCCCCCCCCCCCCCCCHHHCCCHHHCCHHHHHCCCCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             75546---283114888788779999806414008865898771446871541799987817067999999999999999


Q ss_pred             CCCC--------------HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCC-----------------CCCCCCCHHHH
Q ss_conf             3999--------------8899999988862899886547899999973125-----------------54577657788
Q gi|254780286|r   92 LRID--------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYG-----------------GFDHNIQSFRI  140 (410)
Q Consensus        92 l~~~--------------~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~-----------------gFegNaQ~~Ri  140 (410)
                      |+++              ++||||||||||||||||||+||+||++||+++|                 |||||||||||
T Consensus        81 l~~~~~~~~~~~~~~~~~~~lvea~~L~HDiGHpPFGH~GE~aL~~~~~~~g~~~~~~~~~~~~~~d~~gFe~N~QslRI  160 (451)
T 2pgs_A           81 VGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQAAGRGWLDAMSETERNDFLNFEGNAQGFRV  160 (451)
T ss_dssp             HHHHTGGGSCTTCCHHHHHHHHHHHHHHTTTTCCTTHHHHHHHHHHHHHHHHTTTTTTTSCHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf             99888762611135410778999999863279998662099999999885468114444216664023565743767688


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCC-----CCCCCCHHHHHHHHHH---HCC----CCCCCCCHHHHHH
Q ss_conf             754321146701000247888776347577886444-----5521001457766764---022----3133667321798
Q gi|254780286|r  141 VTELECSYADFDGINLTWETLEGLIGHNGPILPQDL-----DKPRIIPRIFSDYYHI---HGL----SLANFASLEGQVA  208 (410)
Q Consensus       141 lt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~----~~~~~~slEa~iv  208 (410)
                      ||+||+++.+ +|||||++||+||+||||+....+.     .+++.+......+.+.   ..+    .....+++|||||
T Consensus       161 vt~LE~~~~~-~GLNLT~~tL~gilKyp~~~~~~~~~~~~~~k~g~~~~e~~~~~~i~~~~~~~~~~~~~~~~~~ea~Im  239 (451)
T 2pgs_A          161 LTQLEYHQFD-GGTRLTYATLGTYLKYPWTARHADSLGYKKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLM  239 (451)
T ss_dssp             HHTTSSBTTT-TBTCCBHHHHHHHCSSCBBCC--------CCCCCBCTTTHHHHHHHHHHHTCCCCBTTBCCCCTTHHHH
T ss_pred             HHHCCCCCCC-CCCCCCHHHHCCHHCCCCCCCCCCCCCHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
T ss_conf             6612115777-754267998600230776555654210222035544103689999987607843000134378689999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HHHHHHH-HHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             65655443212079899875306776300156--6888999-88654889989999999999999999978886787787
Q gi|254780286|r  209 AIADDIAYDAHDIDDGVRAGLLTVDMLKEISF--LEKHIAS-LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIA  285 (410)
Q Consensus       209 eaADDIAY~~hDlEDai~~gli~~~~l~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~l~r~~I~~~i~d~i~~s~~~i~  285 (410)
                      +|||||||++||||||+++|+|+++++.++.+  +...+.+ .....+..........+++..|+.+++.++..+.++. 
T Consensus       240 d~ADDIAY~~HDlEDair~gli~~~~l~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~l~~~~I~~li~~~~~~~i~~~-  318 (451)
T 2pgs_A          240 EAADDICYALIDLEDGLEMDLLDYAEVESLLLGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTNAAARAFVEQQ-  318 (451)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHTTCC----------------CHHHHHHHHHHHHHHHHHHHHHHTTTS-
T ss_pred             HHHHHHCHHHHEHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf             9866323102048768870778899999988999867679999862422567899999999999999999999999849-


Q ss_pred             HHCHHHHHHHHH---CCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCHHHC-----CC
Q ss_conf             515454676442---6852111470357999999999999851789999999999999999999998788845-----74
Q gi|254780286|r  286 HLKPHAIHDIRS---AGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKM-----RG  357 (410)
Q Consensus       286 ~~~~~~~~di~~---~~~~li~fs~~~~~~~k~LK~~l~~~Vy~~~~v~~~e~~g~~iI~~Lf~~f~~~p~~l-----~~  357 (410)
                             +.+..   ....+..+++++...+..+|+|++++||+++.|+.++.+|+++|..||+.|+..+...     +.
T Consensus       319 -------~~i~~g~~~~~li~~~~~~~~~~~~~lk~~~~~~iy~~~~v~~~e~~~~~ii~~L~~~~~~~~~~~~~~~~~~  391 (451)
T 2pgs_A          319 -------DALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAYTTLEILLNAFCGAAVEQFGGRTPS  391 (451)
T ss_dssp             -------HHHHSSCCSSCGGGGSCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCCCC
T ss_pred             -------HHHHHHHCCCCCHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_conf             -------9998312346511112789999999999999999418899999999999999999999998687642102730


Q ss_pred             CHHHHHH---------HCCCHHCCCEEEHHEECCCCHHHHHHHHHHHHCCCCC
Q ss_conf             1067766---------0258000010302000673369999999998188988
Q gi|254780286|r  358 CNQLEYE---------RDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPD  401 (410)
Q Consensus       358 ~~~~~~~---------~~~~~~~r~R~V~DYIAGMTD~YAi~ly~kL~G~~p~  401 (410)
                      .+...+.         ...+.+.+.|+||||||||||+||+++|++|+|.+||
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~~r~V~DyIAGMTD~yA~~ly~~L~G~s~~  444 (451)
T 2pgs_A          392 FKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMTDSYASEMAREMTGRSGE  444 (451)
T ss_dssp             TTHHHHHHTTTTSSCCTTSCHHHHHHHHHHHHHTSCHHHHHHHHHTC------
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCC
T ss_conf             78999998643205674357678888998520066388999999974295999


No 4  
>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1
Probab=100.00  E-value=3.1e-35  Score=278.58  Aligned_cols=108  Identities=28%  Similarity=0.391  Sum_probs=95.7

Q ss_pred             HHHCCCCEEECCHHHHHHCCCCEEEECCC--CCCCCCCHHHHHHHHHHHHHHHHHCCCCH-HHHHHHHHHHHCCCCCCCC
Q ss_conf             43400001102734623275747871699--98706620888999999999998839998-8999999888628998865
Q gi|254780286|r   39 EFQRDRDRMIHTTAFRRLKDKTQVFFHRQ--RDHYRTRLMHTIEVSQIARSLARALRIDE-DLVEAIALAHDFGHPPFGH  115 (410)
Q Consensus        39 ~f~rD~dRIi~S~afRRL~~KTQVf~~~~--~d~~rtRLtHslEVa~i~rsi~~~l~~~~-dlvea~~L~HDiGhpPFGH  115 (410)
                      ++..+..|||+|++|||||+||||+|+..  ++++||||||||||+++||++|+.|+.+. ++|++|||+||||||||||
T Consensus        14 ~~~~~~~riI~s~~fqRLr~~~Qlg~~~~v~p~a~htR~~HSLgV~~lar~~~~~L~~~~~~~v~~A~LlHDIGH~PFsH   93 (371)
T 2hek_A           14 RVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKEKELVKLAGLLHDLGHPPFSH   93 (371)
T ss_dssp             EEEHHHHHHHTSHHHHGGGGSBTTTTGGGTSTTCCCBHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHTTTTTCCSSSS
T ss_pred             ECCHHHHHHHCCHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
T ss_conf             62889999819976714356612785533179981663019999999999999997543388999999987137785520


Q ss_pred             CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             4789999997312554577657788754321
Q gi|254780286|r  116 VGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus       116 ~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                      +||++++.|+...++++++.+..++...++.
T Consensus        94 ~gE~~i~~~~~~~~~~~~~~~~~~~~~~~~~  124 (371)
T 2hek_A           94 TTEVLLPRERSHEDFTERVIKETEIYEILKQ  124 (371)
T ss_dssp             CHHHHSTTSSSCCCHHHHHHHHSHHHHHHHT
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf             5767610014530468998753089999987


No 5  
>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A*
Probab=99.80  E-value=8.8e-19  Score=156.93  Aligned_cols=101  Identities=23%  Similarity=0.388  Sum_probs=80.8

Q ss_pred             CCCCCHHHCC---CCEEECCHHHHHHCCCCE------EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----------
Q ss_conf             9999843400---001102734623275747------87169998706620888999999999998839-----------
Q gi|254780286|r   34 SLTRSEFQRD---RDRMIHTTAFRRLKDKTQ------VFFHRQRDHYRTRLMHTIEVSQIARSLARALR-----------   93 (410)
Q Consensus        34 ~~~R~~f~rD---~dRIi~S~afRRL~~KTQ------Vf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~-----------   93 (410)
                      |+.=...+-|   --+||.|++|.||.+.+|      |||-.    .|||.+|||.|+++|+.+++.|.           
T Consensus        42 Dpihg~I~~~~~~~~~iIdtp~fQRLR~IkQLG~~~lVfPgA----~HtRfeHSLGv~~la~~~~~~l~~~~~~~~~~~~  117 (480)
T 3irh_A           42 DPVHNYIHVQHQVILDLINSAEVQRLRRIKQLGTSSFTFHGA----EHSRFSHSLGVYEITRRICEIFQRNYSVERLGEN  117 (480)
T ss_dssp             ETTTEEEEEEEHHHHHHHTSHHHHGGGGSBSSTTGGGTSTTC----CCBHHHHHHHHHHHHHHHHHHHHHHSBHHHHGGG
T ss_pred             CCCCCEEEECHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCC----CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             698730896879999862997772225565478656378898----3072349999999999999999861541002445


Q ss_pred             -CC---HHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             -99---889999998886289988654789999997312554577657788754321
Q gi|254780286|r   94 -ID---EDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus        94 -~~---~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                       ++   ..++.+|||.|||||+||+|++|...        ++.|+.+|.+++..++.
T Consensus       118 ~~~~~~~~~~~~AaLlHDiGHgPFSH~~E~~~--------~~~He~~s~~ii~~~~~  166 (480)
T 3irh_A          118 GWNDDERLITLCAALLHDVGHGPYSHTFEHIF--------DTNHEAITVQIITSPET  166 (480)
T ss_dssp             SBCGGGHHHHHHHHHHTTTTCCTTHHHHHHHH--------CCCHHHHHHHHHHCTTS
T ss_pred             CCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCC--------CCCHHHHHHHHHHHHHH
T ss_conf             66778899999999986148783211023002--------43357889999972456


No 6  
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.69  E-value=2.4e-16  Score=138.96  Aligned_cols=93  Identities=28%  Similarity=0.427  Sum_probs=80.1

Q ss_pred             CEEECCHHHHHHCCCCE------EEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCH---HHHHHHHHHHHCCC
Q ss_conf             01102734623275747------87169998706620888999999999998839-----998---89999998886289
Q gi|254780286|r   45 DRMIHTTAFRRLKDKTQ------VFFHRQRDHYRTRLMHTIEVSQIARSLARALR-----IDE---DLVEAIALAHDFGH  110 (410)
Q Consensus        45 dRIi~S~afRRL~~KTQ------Vf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~-----~~~---dlvea~~L~HDiGh  110 (410)
                      -+||-|+.|.||.+.+|      |||...    |||.+|||.|+.+|+.+++.|.     +.+   .+|++|||.|||||
T Consensus        25 ~~iidt~~fqRLr~ikQlg~~~~v~p~a~----HtRfeHSlGv~~la~~~~~~l~~~~~~~~~~~~~~~~~AaLlHDiGH  100 (410)
T 2q14_A           25 YDIVRHPLLQRLTRIKQVGLSSVVYPGAQ----HTRFQHSLGAFYLMSEAITQLTSKGNFIFDSEAEAVQAAILLHDIGH  100 (410)
T ss_dssp             HHHHHSHHHHGGGGSBTTTTTTTTCTTCC----CBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTTTC
T ss_pred             HHHCCCHHHHCCCCCCCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf             98629976720068653786767689983----37000999999999999999985288898789999999999872688


Q ss_pred             CCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             9886547899999973125545776577887543211
Q gi|254780286|r  111 PPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS  147 (410)
Q Consensus       111 pPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~  147 (410)
                      +||+|++|+++.      .+++|+..|.+++..+...
T Consensus       101 ~PfSH~~E~~~~------~~~~He~~~~~i~~~~~~~  131 (410)
T 2q14_A          101 GPFSHVLEDTIV------QGVSHEEISLMLMERMNKE  131 (410)
T ss_dssp             CTTHHHHHTTTS------TTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHC------CCCCHHHHHHHHHHHHHHH
T ss_conf             843012435402------6875178899999988765


No 7  
>2o08_A BH1327 protein; putative HD superfamily hydrolase, structural genomics, JOIN for structural genomics, JCSG; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
Probab=98.87  E-value=2.9e-09  Score=86.58  Aligned_cols=122  Identities=21%  Similarity=0.101  Sum_probs=80.3

Q ss_pred             CCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCC------
Q ss_conf             74787169998706620888999999999998839998899999988862899886547899999973125545------
Q gi|254780286|r   59 KTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFD------  132 (410)
Q Consensus        59 KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFe------  132 (410)
                      .||++.+-++..--+|+.||+.||.+|+.||+.+|+|++++..|||.||||..++.+...........+...++      
T Consensus         4 ~~~~~~~~~~~~~e~r~~Hs~~Va~~A~~lA~~~gld~~~~~~agLlHDIGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (188)
T 2o08_A            4 RGKALQLVKPHLTEHRYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAKFRDKNEMRTLIREKLSQQDILFYGDELL   83 (188)
T ss_dssp             HHHHHHHHGGGCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHCSCCGGGGSCGGGS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHCCC
T ss_conf             99999999974887674999999999999999809399999999999872355787999999874355137888610124


Q ss_pred             CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             77657788754321146701000247888776347577886444552100145776676402231336673217986565
Q gi|254780286|r  133 HNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIAD  212 (410)
Q Consensus       133 gNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaAD  212 (410)
                      |-.-|..++...        -.++.-+++.+|.-|..+..                           ..+.++.|+-.||
T Consensus        84 H~~~g~~~~~~~--------~~~~~~~v~~aI~~H~~g~~---------------------------~~~~~~~Iv~~AD  128 (188)
T 2o08_A           84 HAPCGAYYVREE--------VGIEDEDVLQAIRFHTTGRP---------------------------NMSLLEKIIFLAD  128 (188)
T ss_dssp             HHHHHHHHHHHH--------HCCCCHHHHHHHHTTTTCCT---------------------------TCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH--------CCCCHHHHHHHHHHHCCCCC---------------------------CCCHHHHHHHHHH
T ss_conf             799999999756--------48987999999998587989---------------------------9887999999999


Q ss_pred             HHH
Q ss_conf             544
Q gi|254780286|r  213 DIA  215 (410)
Q Consensus       213 DIA  215 (410)
                      -|+
T Consensus       129 ~i~  131 (188)
T 2o08_A          129 YIE  131 (188)
T ss_dssp             HHS
T ss_pred             HHC
T ss_conf             814


No 8  
>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V}
Probab=98.31  E-value=5.5e-05  Score=54.93  Aligned_cols=105  Identities=20%  Similarity=0.207  Sum_probs=65.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCC----------CCCCCCHHHHH
Q ss_conf             66208889999999999988399988999999888628998865478999999731255----------45776577887
Q gi|254780286|r   72 RTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGG----------FDHNIQSFRIV  141 (410)
Q Consensus        72 rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~g----------FegNaQ~~Ril  141 (410)
                      ..|+.||+.||.+|+.||+.+|+|++.+..|||.||||--   +..|+.++..-+ ++.          ..|-.-|-.++
T Consensus        25 ~~r~~Hs~~Va~lA~~lA~~~g~d~~~~~~AgLLHDIGK~---~~~~~~l~~~~~-~~~~~d~~~~~~~~~H~~~g~~~l  100 (196)
T 2ogi_A           25 DKRFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYAKE---LSDDEFLRLIDK-YQPDPDLKKWGNNIWHGLVGIYKI  100 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT---CCHHHHHHHHHH-HCCCTGGGGSCHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC---CCHHHHHHHHHH-CCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf             5474999999999999999909499999999999970465---685999998875-489855988600123899999999


Q ss_pred             HHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             54321146701000247888776347577886444552100145776676402231336673217986565544
Q gi|254780286|r  142 TELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIA  215 (410)
Q Consensus       142 t~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIA  215 (410)
                      ...       .| ....+++++|..|....                           ...+.++.|+-+||-|.
T Consensus       101 ~~~-------~~-~~~~~i~~aI~~H~~g~---------------------------~~~~~~~kIv~~AD~l~  139 (196)
T 2ogi_A          101 QED-------LA-IKDQDILAAIAKHTVGS---------------------------AQMSTLDKIVYVADYIE  139 (196)
T ss_dssp             HHH-------SC-CCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHC
T ss_pred             HHH-------CC-CCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHCC
T ss_conf             866-------28-98199999999748899---------------------------99898999999897527


No 9  
>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
Probab=98.21  E-value=2.5e-05  Score=57.54  Aligned_cols=106  Identities=20%  Similarity=0.142  Sum_probs=68.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH----------CCCCCCCCCHHHHHH
Q ss_conf             6208889999999999988399988999999888628998865478999999731----------255457765778875
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSS----------YGGFDHNIQSFRIVT  142 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~----------~~gFegNaQ~~Rilt  142 (410)
                      .|..||+.||..++.||+.+|+|++.+..|||.||||--   +.-+..+...-+.          ..++.|..=|-.++.
T Consensus        19 ~r~~Hs~~Va~la~~lA~~~g~d~~~~~~agLlHDIGK~---~~~~~~l~~~~~~~~~~~~~e~~~~~~~H~~~ga~il~   95 (190)
T 3ccg_A           19 KRYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAKK---LPGEKIIEICTNEGYELGDEDIRNSYLLHGLAGRILAK   95 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTTT---SCHHHHHHHHHHTTCCCCHHHHTTTTC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC---CCHHHHHHHHHHCCCCCCHHHHHCHHHHHHHHHHHHHH
T ss_conf             571799999999999999919599999999999861554---68799999987526774499986531126999999989


Q ss_pred             HHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             43211467010002478887763475778864445521001457766764022313366732179865655443
Q gi|254780286|r  143 ELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAY  216 (410)
Q Consensus       143 ~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY  216 (410)
                      ..-        -.+.-+++.+|..|....                           ...+++++|+-+||-|..
T Consensus        96 ~~~--------~~~~~~i~~aI~~H~~g~---------------------------~~~~~~~kIv~~AD~i~~  134 (190)
T 3ccg_A           96 KVI--------GIDDEDVLNAIEFHTTGR---------------------------PNMSLLEKIIYIADYIEP  134 (190)
T ss_dssp             HTT--------CCCCHHHHHHHHTTTTCC---------------------------SSCCHHHHHHHHHHHHST
T ss_pred             HHC--------CCCHHHHHHHHHHHCCCC---------------------------CCCCHHHHHHHHHHHHCC
T ss_conf             774--------798699999998629899---------------------------998989999999988477


No 10 
>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1
Probab=97.68  E-value=9.5e-05  Score=53.19  Aligned_cols=99  Identities=23%  Similarity=0.262  Sum_probs=62.2

Q ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             20888999999999998839998899999988862899886547899999973125545776577887543211467010
Q gi|254780286|r   74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG  153 (410)
Q Consensus        74 RLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~G  153 (410)
                      -+.|+.-|.+.|+.|++..+.|.++|++|||.||||.|-           .  ...+.+|...+-+++..+=..    -|
T Consensus        34 d~~H~~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k-----------~--~~~~~~h~~~~a~~a~~~L~~----~~   96 (220)
T 2pq7_A           34 DISHTFRVMENASEIASREKCDLQKAIIAALLHDIKRPH-----------E--ALTGVDHAESGAEYASGLLPT----MG   96 (220)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHTTTTHHH-----------H--HHHCCCHHHHHHHHHHHHGGG----GT
T ss_pred             CHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------H--CCCCCCHHHHHHHHHHHHHHH----CC
T ss_conf             889999999999999988599999999999985540386-----------4--267534899999999999987----79


Q ss_pred             CCHHH--HHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Q ss_conf             00247--88877634757788644455210014577667640223133667321798656554
Q gi|254780286|r  154 INLTW--ETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI  214 (410)
Q Consensus       154 LNLT~--atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDI  214 (410)
                      +.-+.  .+..+|.-|..+..                         ....++|++||.-||-+
T Consensus        97 ~~~~~i~~I~~~I~~hs~~~~-------------------------~~~~sle~~Iv~DADrL  134 (220)
T 2pq7_A           97 FDISFVAEVSKAIRSHRYSGG-------------------------LTPTSLTGKILQDADRL  134 (220)
T ss_dssp             CCHHHHHHHHHHHHHCC------------------------------CCCSHHHHHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHCCCCCC-------------------------CCCCCHHHHHHHHHHHH
T ss_conf             999999999999998076557-------------------------77688599999999977


No 11 
>3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1
Probab=97.65  E-value=6.6e-05  Score=54.38  Aligned_cols=51  Identities=24%  Similarity=0.253  Sum_probs=43.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             987066208889999999999988399988999999888628998865478
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE  118 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE  118 (410)
                      ++.--+-+.|++-|.+.|+.|++..+.|.++|++|||.||||.++..+.++
T Consensus        20 ~~~~~Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDigd~k~~~~~~   70 (223)
T 3djb_A           20 KDASGHDWYHIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEE   70 (223)
T ss_dssp             SSSCTTTHHHHHHHHHHHHHHHTTTCSCHHHHHHHHTTHHHHC--CCSSST
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             699865889999999999999988599899999999996415412352456


No 12 
>3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1
Probab=97.65  E-value=0.00014  Score=51.98  Aligned_cols=46  Identities=22%  Similarity=0.245  Sum_probs=40.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             6208889999999999988399988999999888628998865478
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE  118 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE  118 (410)
                      +-+.|++-|.+.|+.|++..+.|.++|++|||.||||.++.+...|
T Consensus        25 Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~lAAlLHDig~~k~~~~~~   70 (223)
T 3dto_A           25 HDWYHIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPE   70 (223)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSTTC-------C
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHH
T ss_conf             7889999999999999988488899999999973102244577567


No 13 
>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12}
Probab=97.57  E-value=7.6e-05  Score=53.92  Aligned_cols=45  Identities=20%  Similarity=0.113  Sum_probs=40.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             620888999999999998839998899999988862899886547
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG  117 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~G  117 (410)
                      .-+.|++-|.+.|+.|+...+.|.++|++|||.||||-.+..|.+
T Consensus        25 Hd~~Hi~RV~~~A~~Ia~~e~~D~~vv~lAALLHDIg~~k~~~~~   69 (239)
T 3gw7_A           25 HDVCHFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQ   69 (239)
T ss_dssp             --CCHHHHHHHHHHHHTTTSCSCTTHHHHHHHHTTTTC-------
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHCCCCC
T ss_conf             888999999999999998749889999999997245510026883


No 14 
>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1
Probab=97.31  E-value=0.00047  Score=48.06  Aligned_cols=46  Identities=17%  Similarity=0.147  Sum_probs=40.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             6208889999999999988399988999999888628998865478
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGE  118 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE  118 (410)
                      +-.-|++-|.+.|+.|++..+.|.++|++|||.||||.++..+..+
T Consensus        25 Hd~~H~~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDig~~k~~~~~~   70 (209)
T 3b57_A           25 HDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTDEQ   70 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHCSCHHHHHHHHHHTTCCC-------C
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHCCCCCHH
T ss_conf             6889999999999999987599899999999983200001477265


No 15 
>2qgs_A Protein Se1688; alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: a.211.1.1
Probab=97.27  E-value=0.00067  Score=46.94  Aligned_cols=50  Identities=22%  Similarity=0.140  Sum_probs=41.8

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             87066208889999999999988399-988999999888628998865478
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDFGHPPFGHVGE  118 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDiGhpPFGH~GE  118 (410)
                      |..-+-+.|++-|...|..|+...+. |..+|++|||.||||.++..|..+
T Consensus        21 ~~~~Hd~~H~~RV~~~A~~Ia~~e~~~D~~vv~~AAlLHDigd~k~~~~~~   71 (225)
T 2qgs_A           21 DTTGHDIAHVERVYNNACYIAKRENITDTLVIELSSLLHDTVDSKLTDEIL   71 (225)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHTTCSCCHHHHHHHHHTTTTCCSSSCHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCHHH
T ss_conf             998668799999999999999884988599999999987313212345167


No 16 
>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
Probab=97.04  E-value=0.0014  Score=44.58  Aligned_cols=46  Identities=28%  Similarity=0.270  Sum_probs=39.8

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCC
Q ss_conf             9870662088899999999999883999889999998886289988
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPF  113 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPF  113 (410)
                      +|.--+-+-|++-|...|+.|++..+.|.++|++|||.||||.++.
T Consensus        25 ~d~s~Hd~~Hv~RV~~~A~~Ia~~e~~D~~vv~~AAlLHDi~d~k~   70 (231)
T 2pjq_A           25 HDHSGHGRDHLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKL   70 (231)
T ss_dssp             TCCSSCSHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHC---
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCC
T ss_conf             5888678799999999999999884999999999999971046446


No 17 
>3m1t_A Putative phosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis}
Probab=96.67  E-value=0.00079  Score=46.41  Aligned_cols=131  Identities=16%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf             98706620888999999999998839998899999988862899886547899999973125545776577887543211
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECS  147 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~  147 (410)
                      +...+.=..||+.||.+++.|++.++.+++-+-.++|.||||-....+...+.-..+.....   .+. .+   ..+|..
T Consensus       100 ~~~~~~~w~~s~~~A~~a~~la~~~~~~~~~a~~agLLhdiG~l~l~~~~~~~~~~i~~~~~---~~~-~~---~~~E~~  172 (275)
T 3m1t_A          100 GFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAVAATISAAVA---DGA-DR---NLMEKE  172 (275)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHHH---TTC-CH---HHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCC-CH---HHHHHH
T ss_conf             46899999999999999999998702369999998888778999998766789999999872---799-88---999999


Q ss_pred             CCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHH-HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf             4670100024788877634757788644455210014577667-6402231336673217986565544321207
Q gi|254780286|r  148 YADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYY-HIHGLSLANFASLEGQVAAIADDIAYDAHDI  221 (410)
Q Consensus       148 ~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~slEa~iveaADDIAY~~hDl  221 (410)
                           =+..|++.+++.+--.|...+.           +.+.. .-.........+..+.++.+||-||-.....
T Consensus       173 -----~~g~~h~~ig~~l~~~W~lp~~-----------i~~~I~~hh~p~~~~~~~~l~~iv~lA~~la~~~~~~  231 (275)
T 3m1t_A          173 -----LLGYDNAEIGALLAQSWKFTPH-----------LVKGIQFQNHPKSAEPYSKLAGMLAMAKQIAADWDKI  231 (275)
T ss_dssp             -----HHSSCHHHHHHHHHHHTTCCHH-----------HHHHHHTTTCGGGCSSCCHHHHHHHHHHHHHHHGGGS
T ss_pred             -----HHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf             -----9788899999999987089899-----------9999998659555788877999999999999857879


No 18 
>3hc1_A Uncharacterized HDOD domain protein; HDOD domain protein with unknown function, structural genomics; 1.90A {Geobacter sulfurreducens}
Probab=96.43  E-value=0.0015  Score=44.45  Aligned_cols=135  Identities=15%  Similarity=0.082  Sum_probs=70.1

Q ss_pred             EECCCCCCCCCCH-HHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHH
Q ss_conf             7169998706620-888999999999998839-99889999998886289988654789999997312554577657788
Q gi|254780286|r   63 FFHRQRDHYRTRL-MHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI  140 (410)
Q Consensus        63 f~~~~~d~~rtRL-tHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Ri  140 (410)
                      |+...+.+-..++ .||+.||.+++.|++.++ .+++.+-+++|.||||-..+-+.-.+.-.++...   -+.+..++. 
T Consensus       107 ~~~~~~~~~~~~~w~hS~~~A~~a~~lA~~~~~~~~~~a~~aGLLhdiG~l~l~~~~~~~~~~i~~~---~~~~~~~~~-  182 (305)
T 3hc1_A          107 FKTGKGPLNRSTLWAHSLGVARIAKLIAERTGFLNPVNVYVAGLLHDVGEVFINFFRGKEFSQVVTL---VDEEKITFG-  182 (305)
T ss_dssp             HHSCCCSSCHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHTTTHHHHHHHHHSHHHHHHHHHH---HHHHCCCHH-
T ss_pred             HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHCCCCCHH-
T ss_conf             6467530268999999999999999999873789999999999998149999977657989999999---865799989-


Q ss_pred             HHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             75432114670100024788877634757788644455210014577667640223133667321798656554432
Q gi|254780286|r  141 VTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYD  217 (410)
Q Consensus       141 lt~LE~~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~slEa~iveaADDIAY~  217 (410)
                        ..|.+     =+..|++.+++.+---|...+.-       -......... ...... ....+++|-+||-||=.
T Consensus       183 --~~E~~-----~~g~~h~~ig~~l~~~W~lP~~i-------~~~i~~hh~p-~~~~~~-~~~l~~iv~lA~~l~~~  243 (305)
T 3hc1_A          183 --QAEER-----LFGTSHCEVGFALAKRWSLNEFI-------CDTILYHHDI-EAVPYK-QAAIVAMVAFADEYCTL  243 (305)
T ss_dssp             --HHHHH-----HHSSCHHHHHHHHHHHTTCCHHH-------HHHHHHTTCG-GGCSSS-CCHHHHHHHHHHHHHHH
T ss_pred             --HHHHH-----HHCCCHHHHHHHHHHHCCCCHHH-------HHHHHHHCCC-CCCCCC-CHHHHHHHHHHHHHHHH
T ss_conf             --99999-----96879999999999986989999-------9999986692-327856-11396999999999998


No 19 
>3mem_A Putative signal transduction protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.25A {Marinobacter aquaeolei}
Probab=94.64  E-value=0.061  Score=32.46  Aligned_cols=68  Identities=13%  Similarity=0.245  Sum_probs=34.4

Q ss_pred             HHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCC-CCCCCC
Q ss_conf             340000110273462327574787169998706620888999999999998839-99889999998886289-988654
Q gi|254780286|r   40 FQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGH-PPFGHV  116 (410)
Q Consensus        40 f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGh-pPFGH~  116 (410)
                      .+.|-++|+-+--++-=.+.-+|. ++.        +|.+-...+++-+|+.+. .++.=+....-++++|- |||||.
T Consensus        25 ~~i~~~~~~Ktvll~~~~g~v~~v-~p~--------~~~ldl~~l~~~~g~~~~~~~~~~~~~~~~~~~~G~vpp~g~~   94 (457)
T 3mem_A           25 SQIDTGHLLRMVLLSDDQGNLQAI-CRR--------NDMLDLEALNKRLGRDLRMMQRREQVRVRQKAGLQELPALPSL   94 (457)
T ss_dssp             CSSCGGGBEEEEEEEETTEEEEEE-EET--------TSEECHHHHHHHHTCCCEECCHHHHHHHHHHHTCSSCCSCGGG
T ss_pred             CCCCHHHEEEEEEEEECCCEEEEE-EEC--------CCEECHHHHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf             298961573578998789679999-738--------8725799999996888455992999988269978785977777


No 20 
>3dyn_A High affinity CGMP-specific 3',5'-cyclic phosphodiesterase 9A; crystallography, phophodiestrase, enzyme mechanism, alternative splicing, hydrolase; HET: PCG IBM; 2.10A {Homo sapiens} SCOP: a.211.1.2 PDB: 3dyl_A* 3dy8_A* 3dyq_A* 3dys_A* 3jsi_A* 3jsw_A* 2yy2_A* 2hd1_A* 3k3e_A* 3k3h_A*
Probab=94.21  E-value=0.028  Score=34.94  Aligned_cols=73  Identities=23%  Similarity=0.433  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCC---C--CCCCC
Q ss_conf             706620888999999999998839998-----89--9999988862899886547899999973-1255---4--57765
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQELLS-SYGG---F--DHNIQ  136 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~~~~~-~~~g---F--egNaQ  136 (410)
                      -+|| -+|+..|+|.+-.+-...++..     ++  +=.|||+||+|||=.--.-...-+.... -|++   -  -|=+.
T Consensus        73 pYHN-~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAAl~HDv~HpG~~N~fli~t~~~la~~Ynd~SvLEn~H~~~  151 (329)
T 3dyn_A           73 PFHN-FRHCFCVAQMMYSMVWLCSLQEKFSQTDILILMTAAICHDLDHPGYNNTYQINARTELAVRYNDISPLENHHCAV  151 (329)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHHTTHHHHSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             9977-899998999999999854755568989999999999980489999996899862876888749986468889999


Q ss_pred             HHHHHHH
Q ss_conf             7788754
Q gi|254780286|r  137 SFRIVTE  143 (410)
Q Consensus       137 ~~Rilt~  143 (410)
                      +++||.+
T Consensus       152 ~~~lL~~  158 (329)
T 3dyn_A          152 AFQILAE  158 (329)
T ss_dssp             HHHHHTS
T ss_pred             HHHHHHC
T ss_conf             9999817


No 21 
>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} PDB: 3ljv_A
Probab=93.97  E-value=0.036  Score=34.16  Aligned_cols=84  Identities=11%  Similarity=0.097  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCC
Q ss_conf             0888999999999998839-998899999988862899886547899999973125545776577887543211467010
Q gi|254780286|r   75 LMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDG  153 (410)
Q Consensus        75 LtHslEVa~i~rsi~~~l~-~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~~~~~~~G  153 (410)
                      ..||+.+|.+++.|++.++ .+++.+-.+||.||||-..+-...-+...++.+.-       .+-.. ...|+..     
T Consensus       110 w~hs~~~A~~a~~la~~~~~~~~~~a~~aGLLhdiG~l~l~~~~p~~~~~~~~~~-------~~~~~-~~~E~~~-----  176 (288)
T 3ljx_A          110 WQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKA-------DGEAL-IALERER-----  176 (288)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSSCHHHHHHHHHHTTHHHHHHHHHCHHHHHHHHHHC-------CHHHH-HHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHC-------CCCCH-HHHHHHH-----
T ss_conf             9999999999999999848999999999899987279999786769999999874-------37774-8999999-----


Q ss_pred             CCHHHHHHHHHHCCCCCC
Q ss_conf             002478887763475778
Q gi|254780286|r  154 INLTWETLEGLIGHNGPI  171 (410)
Q Consensus       154 LNLT~atL~~iiKyp~~~  171 (410)
                      +..|++.+++.+.-.|..
T Consensus       177 ~G~~h~~ig~~l~~~W~l  194 (288)
T 3ljx_A          177 FATDHDELTRMLLTDWGF  194 (288)
T ss_dssp             HSSCHHHHHHHHHHHTTC
T ss_pred             HCCCHHHHHHHHHHHCCC
T ss_conf             888999999999998597


No 22 
>3kq5_A Hypothetical cytosolic protein; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Coxiella burnetii}
Probab=93.72  E-value=0.0048  Score=40.61  Aligned_cols=71  Identities=8%  Similarity=0.001  Sum_probs=52.8

Q ss_pred             CCCHHHCCCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC-HH----HHHHHHHHHHCCC
Q ss_conf             998434000011027346232757478716999870662088899999999999883999-88----9999998886289
Q gi|254780286|r   36 TRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRID-ED----LVEAIALAHDFGH  110 (410)
Q Consensus        36 ~R~~f~rD~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~-~d----lvea~~L~HDiGh  110 (410)
                      -++.|++.     +-.+.+|+..=.|.+|..++.|.--=|-|+|||+..+-.+...-.-. .+    -|=.|||.||||.
T Consensus        43 ~~~~f~~~-----yl~pl~~~a~~vQ~lPAse~~h~GGlldh~Lev~~~alr~~~ee~~~q~~~W~~Avf~AaLlhdigk  117 (393)
T 3kq5_A           43 PTEQYAQL-----YEALVYRFVEFVQVLPIRLDEPLCSLMNEGLLRGVNSLNHYIQNHPEATPLERYALFSAGLLLEVAH  117 (393)
T ss_dssp             CHHHHHHH-----THHHHHHHHHHHTTCCSSTTSCTTHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTTTTH
T ss_pred             CHHHHHHH-----HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf             99999999-----9999999999997288876788875788899999999863876555457889999999999963241


Q ss_pred             C
Q ss_conf             9
Q gi|254780286|r  111 P  111 (410)
Q Consensus       111 p  111 (410)
                      +
T Consensus       118 ~  118 (393)
T 3kq5_A          118 A  118 (393)
T ss_dssp             H
T ss_pred             C
T ss_conf             1


No 23 
>1tbf_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5A, hydrolase; HET: VIA; 1.30A {Homo sapiens} SCOP: a.211.1.2 PDB: 1t9s_A* 1xoz_A* 1xp0_A* 2chm_A* 3hc8_A* 3hdz_A* 1t9r_A* 3b2r_A* 2h44_A* 2h42_A* 2h40_A* 1rkp_A* 1udt_A* 1udu_A* 1uho_A* 3jwq_A* 3jwr_A*
Probab=92.76  E-value=0.087  Score=31.32  Aligned_cols=73  Identities=22%  Similarity=0.263  Sum_probs=42.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCHH-----H--HHHHHHHHHCCCCCCCCCHHHHHHHHHHH-CCC-----CCCCCC
Q ss_conf             7066208889999999999988399988-----9--99999888628998865478999999731-255-----457765
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDED-----L--VEAIALAHDFGHPPFGHVGEDVLQELLSS-YGG-----FDHNIQ  136 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~d-----l--vea~~L~HDiGhpPFGH~GE~al~~~~~~-~~g-----FegNaQ  136 (410)
                      -+|| -+|...|+|..-.+-+..++..-     +  +=.|||+||+|||-.--.=...-+..... |+.     =-|=++
T Consensus        99 pYHN-~~HA~dV~q~~~~ll~~~~~~~~ls~~E~~alliAal~HDv~HpG~nN~flv~~~s~La~lYnd~SvLE~hH~~~  177 (347)
T 1tbf_A           99 AYHN-WRHAFNTAQCMFAALKAGKIQNKLTDLEILALLIAALSHDLDHPGVSNQFLINTNSELALMYNDESVLEHHHFDQ  177 (347)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHTTCCGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHTTCHHHHHTTTSSHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHHCCCCCCHHHHHHH
T ss_conf             9747-999999999999999724610239999999999999861579999997899852876889719987208999999


Q ss_pred             HHHHHHH
Q ss_conf             7788754
Q gi|254780286|r  137 SFRIVTE  143 (410)
Q Consensus       137 ~~Rilt~  143 (410)
                      +|+|+.+
T Consensus       178 ~~~ll~~  184 (347)
T 1tbf_A          178 CLMILNS  184 (347)
T ss_dssp             HHHHHHS
T ss_pred             HHHHHHC
T ss_conf             9999826


No 24 
>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 3hmv_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* ...
Probab=92.04  E-value=0.07  Score=32.00  Aligned_cols=44  Identities=25%  Similarity=0.413  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCC
Q ss_conf             706620888999999999998839998-----89--9999988862899886
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFG  114 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFG  114 (410)
                      -+|| -+|...|.|..-.+-...++..     ++  +=.|||+||+|||-.-
T Consensus        81 pyHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAal~HD~~HpG~~  131 (377)
T 1f0j_A           81 AYHN-SLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDHPGVS  131 (377)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf             8743-99999899999999964370000898999999999998204899888


No 25 
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle dysfunction, inhibitor design, allosteric enzyme, alternative splicing, CGMP binding; HET: WAN; 2.00A {Homo sapiens} SCOP: a.211.1.2 PDB: 2k31_A*
Probab=91.82  E-value=0.15  Score=29.62  Aligned_cols=20  Identities=15%  Similarity=0.044  Sum_probs=9.5

Q ss_pred             CHHHHHHHHHHHHCCCCCCC
Q ss_conf             36999999999818898855
Q gi|254780286|r  384 TDSYAIREHHILFGYIPDFA  403 (410)
Q Consensus       384 TD~YAi~ly~kL~G~~p~~~  403 (410)
                      -|..++-+|+.|....|++.
T Consensus       824 ~~~~~~Pl~~~l~~~~p~~~  843 (878)
T 3bjc_A          824 IDAICLQLYEALTHVSEDCF  843 (878)
T ss_dssp             HHHTHHHHHHHHHHHCGGGH
T ss_pred             HHHHHHHHHHHHHHHCHHHH
T ss_conf             99999999999999786489


No 26 
>3itu_A CGMP-dependent 3',5'-cyclic phosphodiesterase; Zn-binding, all-alpha-helical, alternative splicing, hydrolase, membrane, polymorphism; HET: IBM; 1.58A {Homo sapiens} PDB: 3itm_A* 1z1l_A
Probab=91.78  E-value=0.1  Score=30.87  Aligned_cols=44  Identities=23%  Similarity=0.452  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCC----CH-HH--HHHHHHHHHCCCCCCC
Q ss_conf             7066208889999999999988399----98-89--9999988862899886
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRI----DE-DL--VEAIALAHDFGHPPFG  114 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~----~~-dl--vea~~L~HDiGhpPFG  114 (410)
                      -+|| -+|+..|.|..-.+-+..++    ++ ++  +=.|||+||+|||-.-
T Consensus        80 pyHN-~~HA~dV~q~~~~ll~~~~~~~~l~~~e~~alliAal~HDv~HpG~~  130 (345)
T 3itu_A           80 PYHN-WMHAFSVSHFCYLLYKNLELTNYLEDIEIFALFISCMCHDLDHRGTN  130 (345)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHHHCGGGTSCHHHHHHHHHHHHHTTTTCCSCC
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             8845-88899999999999972370012898999999999997256899999


No 27 
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens}
Probab=91.58  E-value=0.13  Score=29.98  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=16.1

Q ss_pred             CCCHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             733699999999981889885555
Q gi|254780286|r  382 GMTDSYAIREHHILFGYIPDFAVD  405 (410)
Q Consensus       382 GMTD~YAi~ly~kL~G~~p~~~~~  405 (410)
                      |.-+..++-+|+.|....|++...
T Consensus       648 ~Fi~~~~~Pl~~~l~~~~p~~~~~  671 (691)
T 3ibj_A          648 SFMEHIAMPIYKLLQDLFPKAAEL  671 (691)
T ss_dssp             HHHHHTHHHHHHHHTTTCGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHH
T ss_conf             999999999999999978036999


No 28 
>3hr1_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE 10A, PDE10 inhibitors, allosteric enzyme, alternative splicing; HET: PF9; 1.53A {Rattus norvegicus} PDB: 3hqy_A* 3hqz_A* 3hqw_A*
Probab=91.47  E-value=0.17  Score=29.11  Aligned_cols=47  Identities=17%  Similarity=0.330  Sum_probs=31.2

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCC--CCH-HH--HHHHHHHHHCCCCCCCCCHH
Q ss_conf             8706620888999999999998839--998-89--99999888628998865478
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLARALR--IDE-DL--VEAIALAHDFGHPPFGHVGE  118 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~~l~--~~~-dl--vea~~L~HDiGhpPFGH~GE  118 (410)
                      -=+|| -.|...|+|..-.+-...+  +++ ++  +=.|||+||+|||  |...-
T Consensus       108 nPYHN-~~HA~dV~q~~~~lL~~~~~~lt~lE~~alliAALcHDv~Hp--G~~N~  159 (380)
T 3hr1_A          108 VPYHN-WKHAVTVAHCMYAILQNNNGLFTDLERKGLLIACLCHDLDHR--GFSNS  159 (380)
T ss_dssp             CSSSS-HHHHHHHHHHHHHHHHTSTTTSCHHHHHHHHHHHHHTTTTCC--SCCHH
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCC--CCCCH
T ss_conf             99817-899999999999999437656898999999999996027999--98968


No 29 
>2r8q_A Class I phosphodiesterase PDEB1; leishimaniasis, parasite inhibitor selectivity, CAMP phosphodiesterase, hydrolase; HET: IBM; 1.50A {Leishmania major}
Probab=91.26  E-value=0.13  Score=30.10  Aligned_cols=72  Identities=24%  Similarity=0.339  Sum_probs=44.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCCCHHHHHH------HHHHHCCC---C-
Q ss_conf             8706620888999999999998839998-----89--999998886289988654789999------99731255---4-
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGHVGEDVLQ------ELLSSYGG---F-  131 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH~GE~al~------~~~~~~~g---F-  131 (410)
                      --+|| -.|...|.|..-.+-...++..     ++  +=.|||+||+|||  |....--++      .....++.   - 
T Consensus        97 nPYHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAAl~HDv~Hp--G~nN~fli~~~~~LA~lY~~~nD~SvLE  173 (359)
T 2r8q_A           97 VPYHN-FYHVVDVCQTLHTYLYTGKASELLTELECYVLLVTALVHDLDHM--GVNNSFYLKTDSPLGILSSASGNNSVLE  173 (359)
T ss_dssp             CSSSS-HHHHHHHHHHHHHHHHTSCGGGGSCHHHHHHHHHHHHHTTTTCC--SCCHHHHHHTTCHHHHHHHHHSCCCHHH
T ss_pred             CCCCC-HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCC--CCCHHHHHHCCCHHHHHHCCCCCCCHHH
T ss_conf             99827-89999999999999972653210898999999999997257999--9981899971889998740347886779


Q ss_pred             -CCCCCHHHHHHH
Q ss_conf             -577657788754
Q gi|254780286|r  132 -DHNIQSFRIVTE  143 (410)
Q Consensus       132 -egNaQ~~Rilt~  143 (410)
                       -|-+.+|+||.+
T Consensus       174 nhH~~~~~~lL~~  186 (359)
T 2r8q_A          174 VHHCSLAIEILSD  186 (359)
T ss_dssp             HHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHCC
T ss_conf             9999999999847


No 30 
>3ecm_A High affinity CAMP-specific and IBMX-insensitive 3',5'-cyclic phosphodiesterase 8A...; phosphodiesterase 8A PDE8A inhibitor selectivity; 1.90A {Homo sapiens} PDB: 3ecn_A*
Probab=91.16  E-value=0.047  Score=33.31  Aligned_cols=71  Identities=24%  Similarity=0.341  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHHH---HHHHCCC-----CCCC
Q ss_conf             706620888999999999998839----998-89--9999988862899886547899999---9731255-----4577
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQE---LLSSYGG-----FDHN  134 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~~---~~~~~~g-----FegN  134 (410)
                      =+|| .+|+..|.|..-.+-...+    +++ +.  +=.|||+||+|||  |....--++.   ...-|++     =-|-
T Consensus        73 pYHN-~~HA~dV~q~~~~lL~~~~~~~~l~~~e~~alliAal~HDv~Hp--G~~N~fl~~~~~~la~~y~d~SvLE~~H~  149 (338)
T 3ecm_A           73 PYHN-STHSADVLHATAYFLSKERIKETLDPIDEVAALIAATIHDVDHP--GRTNSFLCNAGSELAILYNDTAVLESHHA  149 (338)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTSHHHHTTSCHHHHHHHHHHHHHTTTTCC--SSCHHHHHHTTCHHHHHTTTSSHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCHHCCCCHHHHHHHHHHHHHCCCCCC--CCCCHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf             8755-99999999999999970332001998999999999998147999--98768888808838988099975377899


Q ss_pred             CCHHHHHHH
Q ss_conf             657788754
Q gi|254780286|r  135 IQSFRIVTE  143 (410)
Q Consensus       135 aQ~~Rilt~  143 (410)
                      +.++++|.+
T Consensus       150 ~~~~~ll~~  158 (338)
T 3ecm_A          150 ALAFQLTTG  158 (338)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHCC
T ss_conf             999999745


No 31 
>1y2k_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, pyrazole, hydrolase; HET: 7DE; 1.36A {Homo sapiens} SCOP: a.211.1.2 PDB: 1xon_A* 1xoq_A* 1xom_A* 1xor_A* 1y2c_A* 1y2d_A* 1y2e_A* 1y2b_A* 3iak_A* 3k4s_A* 1tbb_A* 1tb7_A* 2fm0_A* 2fm5_A* 1oyn_A* 1ptw_A* 1q9m_A* 1zkn_A* 2qyn_A* 2pw3_A* ...
Probab=91.07  E-value=0.1  Score=30.75  Aligned_cols=45  Identities=20%  Similarity=0.364  Sum_probs=32.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCCCC
Q ss_conf             706620888999999999998839998-----89--99999888628998865
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPFGH  115 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPFGH  115 (410)
                      =+|| -+|...|.|..-.+-+..++.+     ++  +=.|||+||+|||..--
T Consensus        94 pYHN-~~HA~dV~q~~~~lL~~~~l~~~l~~~e~~alliAAl~HDv~HpG~~N  145 (349)
T 1y2k_A           94 AYHN-NIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGVSN  145 (349)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSSCH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf             8725-999999999999999753722108988999999999982269999995


No 32 
>1zkl_A HCP1, TM22, high-affinity CAMP-specific 3',5'-cyclic phosphodiesterase 7A; PDE, hydrolase; HET: IBM; 1.67A {Homo sapiens} PDB: 3g3n_A*
Probab=90.78  E-value=0.051  Score=32.99  Aligned_cols=70  Identities=17%  Similarity=0.289  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCC----CCH-HH--HHHHHHHHHCCCCCCCCCHHHHHH--HH-HHHCCC-----CCCC
Q ss_conf             706620888999999999998839----998-89--999998886289988654789999--99-731255-----4577
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALR----IDE-DL--VEAIALAHDFGHPPFGHVGEDVLQ--EL-LSSYGG-----FDHN  134 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~----~~~-dl--vea~~L~HDiGhpPFGH~GE~al~--~~-~~~~~g-----FegN  134 (410)
                      -+|| -+|...|+|..-.+-+..+    +++ ++  +=.|||+||+|||-  ....--++  .. ..-|++     =-|-
T Consensus        81 PYHN-~~HA~dV~q~~~~ll~~~~l~~~l~~~e~~alliAal~HDv~HpG--~~N~fl~~t~s~lA~~Ynd~SvLEn~H~  157 (353)
T 1zkl_A           81 PYHN-AVHAADVTQAMHCYLKEPKLANSVTPWDILLSLIAAATHDLDHPG--VNQPFLIKTNHYLATLYKNTSVLENHHW  157 (353)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHTSHHHHTTCCHHHHHHHHHHHHHTTTTCCS--SCHHHHHHTTCHHHHHTTTSSHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCC--CCCHHHHHCCCHHHHHCCCCCHHHHHHH
T ss_conf             8752-999999999999999501143108999999999999973268999--9858998728878887199638789999


Q ss_pred             CCHHHHHH
Q ss_conf             65778875
Q gi|254780286|r  135 IQSFRIVT  142 (410)
Q Consensus       135 aQ~~Rilt  142 (410)
                      +.+|+||.
T Consensus       158 ~~~~~lL~  165 (353)
T 1zkl_A          158 RSAVGLLR  165 (353)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
T ss_conf             99999986


No 33 
>1taz_A Calcium/calmodulin-dependent 3',5'-cyclic nucleotide phosphodiesterase 1B; PDE1B, hydrolase; HET: CME; 1.77A {Homo sapiens} SCOP: a.211.1.2
Probab=90.43  E-value=0.19  Score=28.73  Aligned_cols=151  Identities=18%  Similarity=0.111  Sum_probs=69.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHCCCC----H-HH--HHHHHHHHHCCCCCCCCCHHHHHHHHHH-HCCC-----CCCCCC
Q ss_conf             70662088899999999999883999----8-89--9999988862899886547899999973-1255-----457765
Q gi|254780286|r   70 HYRTRLMHTIEVSQIARSLARALRID----E-DL--VEAIALAHDFGHPPFGHVGEDVLQELLS-SYGG-----FDHNIQ  136 (410)
Q Consensus        70 ~~rtRLtHslEVa~i~rsi~~~l~~~----~-dl--vea~~L~HDiGhpPFGH~GE~al~~~~~-~~~g-----FegNaQ  136 (410)
                      =+|| -+|...|.|-.-.+-...++.    + ++  +=.|||+||+|||-+--.-.-.-+.... -|+.     =-|=+.
T Consensus        80 PYHN-~~HA~dV~q~~~~~l~~~~~~~~l~~~e~~alliAAl~HD~~HpG~~N~fli~t~~~LA~~Ynd~SvLEnhH~~~  158 (365)
T 1taz_A           80 PYHN-QIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSFHIQTKSECAIVYNDRSVLENHHISS  158 (365)
T ss_dssp             SSSS-HHHHHHHHHHHHHHHHHHSGGGGSCHHHHHHHHHHHHHTTTTCCSSCHHHHHHHTCHHHHHHTTSSHHHHHHHHH
T ss_pred             CCCC-HHHHHHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCHHHHHCCCCCHHHHHHHHH
T ss_conf             7535-999999999999999713332018999999999999981358999985588636877888649987778999999


Q ss_pred             HHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCC-CCCCCCCCCCCCCHHHHHHHHHHHCC-CCCCCCCHHHHHHHHHHHH
Q ss_conf             778875432114670100024788877634757-78864445521001457766764022-3133667321798656554
Q gi|254780286|r  137 SFRIVTELECSYADFDGINLTWETLEGLIGHNG-PILPQDLDKPRIIPRIFSDYYHIHGL-SLANFASLEGQVAAIADDI  214 (410)
Q Consensus       137 ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~slEa~iveaADDI  214 (410)
                      +|+|+.+-+.  .-+  .||+.+...-+.|.=. .+.+.+..+.   .+....+...... .......+-.-+|-+| ||
T Consensus       159 ~~~lL~~~~~--ni~--~~l~~~~~~~~r~~ii~~ILaTDms~H---~~~~~~~~~~~~~~~~~~~~~ll~~li~~A-Di  230 (365)
T 1taz_A          159 VFRLMQDDEM--NIF--INLTKDEFVELRALVIEMVLATDMSCH---FQQVKTMKTALQQLERIDKPKALSLLLHAA-DI  230 (365)
T ss_dssp             HHHHTTSGGG--CTT--TTSCHHHHHHHHHHHHHHHHTTCGGGH---HHHHHHHHHHHHC--CCCHHHHHHHHHHHH-HT
T ss_pred             HHHHHHCCCC--CCC--CCCCHHHHHHHHHHHHHHHHCCCHHHH---HHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-CC
T ss_conf             9999816133--411--289999999999999999732657879---999999999987421024999999999861-04


Q ss_pred             HHHHHHHHHHHHHHH
Q ss_conf             432120798998753
Q gi|254780286|r  215 AYDAHDIDDGVRAGL  229 (410)
Q Consensus       215 AY~~hDlEDai~~gl  229 (410)
                      +..+...+-+.+-..
T Consensus       231 s~~~rp~~~~~~W~~  245 (365)
T 1taz_A          231 SHPTKQWLVHSRWTK  245 (365)
T ss_dssp             CGGGSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHH
T ss_conf             442377799999999


No 34 
>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A*
Probab=90.20  E-value=0.15  Score=29.47  Aligned_cols=42  Identities=21%  Similarity=0.409  Sum_probs=18.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHCCCCH-----HH--HHHHHHHHHCCCCCC
Q ss_conf             06620888999999999998839998-----89--999998886289988
Q gi|254780286|r   71 YRTRLMHTIEVSQIARSLARALRIDE-----DL--VEAIALAHDFGHPPF  113 (410)
Q Consensus        71 ~rtRLtHslEVa~i~rsi~~~l~~~~-----dl--vea~~L~HDiGhpPF  113 (410)
                      +||- +|...|.|..-.+-...++..     ++  +=.|||.||+|||..
T Consensus       161 YHN~-~HA~DV~q~~~~lL~~~~l~~~lt~lE~~alliAAl~HDv~HpG~  209 (421)
T 3g4g_A          161 YHNN-IHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDHPGV  209 (421)
T ss_dssp             SSSH-HHHHHHHHHHHHHHTCGGGTTTSCHHHHHHHHHHHHHTTTTCCSS
T ss_pred             CCCH-HHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHHCCCCCCCC
T ss_conf             7559-999999999999996526332189899999999999813799998


No 35 
>2cqz_A 177AA long hypothetical protein; hypothetical proteins, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.60A {Pyrococcus horikoshii OT3}
Probab=90.05  E-value=0.36  Score=26.72  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC
Q ss_conf             62088899999999999883-----99988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG  109 (410)
                      |=-.||..||-||--+|..+     ++|.+=|-..||.||++
T Consensus        32 sVAeHs~~vA~ia~~la~~~~~~~~~vd~~k~~~maL~HDl~   73 (177)
T 2cqz_A           32 SIADHSFGVAFITLVLADVLEKRGKRIDVEKALKMAIVHDLA   73 (177)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             499999999999999998987735676999999999983489


No 36 
>1xx7_A Oxetanocin-like protein; PSI, secsg, protein structure initiative, southeast collaboratory for structural genomics; 2.26A {Pyrococcus furiosus} SCOP: a.211.1.1
Probab=89.68  E-value=0.4  Score=26.37  Aligned_cols=37  Identities=35%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHCC
Q ss_conf             62088899999999999883-----99988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARAL-----RIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l-----~~~~dlvea~~L~HDiG  109 (410)
                      |=-.||..||-+|--|+..+     ++|.+-|-..||.||++
T Consensus        37 sVAeHs~~vA~ia~~la~~~~~~g~~vd~~k~~~maL~HDl~   78 (184)
T 1xx7_A           37 SVADHSYRVAFITLLLAEELKKKGVEIDVEKALKIAIIHDLG   78 (184)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             599999999999999999986545576999999999998649


No 37 
>2our_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphodiesterase 10A; PDE10, substrate specificity, hydrolase; HET: CMP; 1.45A {Homo sapiens} PDB: 2ous_A 2ouu_A* 2wey_A* 2oun_A* 2oup_A 2ouq_A* 2ouv_A 2ouy_A* 2o8h_A* 2ovv_A* 2ovy_A* 3lxg_A*
Probab=89.41  E-value=0.19  Score=28.72  Aligned_cols=51  Identities=18%  Similarity=0.298  Sum_probs=32.0

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHCC--CCH-HH--HHHHHHHHHCCCCCCCCCHHH
Q ss_conf             98706620888999999999998839--998-89--999998886289988654789
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARALR--IDE-DL--VEAIALAHDFGHPPFGHVGED  119 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~l~--~~~-dl--vea~~L~HDiGhpPFGH~GE~  119 (410)
                      +--+|| -.|...|+|..-.+-...+  +++ ++  +=.|||+||+|||=+--.-..
T Consensus        76 ~~pYHN-~~HA~dV~q~~~~~L~~~~~~l~~~e~~alliAal~HDv~H~G~~N~fl~  131 (331)
T 2our_A           76 RVPYHN-WKHAVTVAHCMYAILQNNHTLFTDLERKGLLIACLCHDLDHRGFSNSYLQ  131 (331)
T ss_dssp             SCSSSS-HHHHHHHHHHHHHHHHTTGGGSCHHHHHHHHHHHHHTTTTCCSCCHHHHH
T ss_pred             CCCCCC-HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHH
T ss_conf             999807-89999999999999837775799899999999999843699999988888


No 38 
>3mzo_A LIN2634 protein; HD-domain phosphohydrolase, structural genomics, joint cente structural genomics, JCSG, protein structure initiative; HET: MSE; 1.98A {Listeria innocua}
Probab=89.20  E-value=0.53  Score=25.49  Aligned_cols=42  Identities=19%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             CCCCCCCHHHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHCC
Q ss_conf             987066208889999999999988-----399988999999888628
Q gi|254780286|r   68 RDHYRTRLMHTIEVSQIARSLARA-----LRIDEDLVEAIALAHDFG  109 (410)
Q Consensus        68 ~d~~rtRLtHslEVa~i~rsi~~~-----l~~~~dlvea~~L~HDiG  109 (410)
                      |-.-.|=..||+.||.||-.||..     -++|.+=+-..||-||++
T Consensus        25 ~~~~EsVAeHS~~VA~iA~~La~i~~~~~~~vd~~k~~~~AL~HD~~   71 (216)
T 3mzo_A           25 KYQEHSVAEHSYKVTSIAQFFGAVEEDAGNEVNWRALYEKALNHDYS   71 (216)
T ss_dssp             CSSCCBHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTGG
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             99966299999999999999998887526788999999999973028


No 39 
>3i7a_A Putative metal-dependent phosphohydrolase; YP_926882.1, structural genomics, joint center for structural genomics, JCSG; 2.06A {Shewanella amazonensis SB2B}
Probab=88.22  E-value=1.3  Score=22.65  Aligned_cols=114  Identities=12%  Similarity=0.055  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             2088899999999999883-------999889999998886289988654789999997312554577657788754321
Q gi|254780286|r   74 RLMHTIEVSQIARSLARAL-------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus        74 RLtHslEVa~i~rsi~~~l-------~~~~dlvea~~L~HDiGhpPFGH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                      -..||+.||.+++.+++.+       +.+.|.+-.+||.||||-.+        +...+.++.      +.+.-... |.
T Consensus       118 ~w~~s~~~a~~a~~la~~~~~~~~~~~~~~~~a~~aGLlhdiG~l~--------l~~~~~~~~------~~~~~~~~-e~  182 (281)
T 3i7a_A          118 VWRTSIDVTAAACSLLQIYNKKHPGSGLNYDTLTLAGLVHNIGALP--------VLTEAEAHP------EMFTTIEH-LR  182 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSTTCCCCHHHHHHHHHHTTTTHHH--------HHHHHHHCG------GGCCCHHH-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH--------HHHHHHHHH------HHCCHHHH-HH
T ss_conf             9999999999999999997220454323289999988775301888--------988868777------65454899-99


Q ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             146701000247888776347577886444552100145776676-402231336673217986565544321
Q gi|254780286|r  147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH-IHGLSLANFASLEGQVAAIADDIAYDA  218 (410)
Q Consensus       147 ~~~~~~GLNLT~atL~~iiKyp~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~slEa~iveaADDIAY~~  218 (410)
                           .-+.-+.+.+++.+.-.|...+.           +.+... -............+.++.+|+.+|-..
T Consensus       183 -----~~~g~~h~~ig~~l~~~W~lp~~-----------i~~~i~~hh~~~~~~~~~~l~~iv~lA~~~~~~~  239 (281)
T 3i7a_A          183 -----SLVRKMQGPIGRAVLKSWDFAPE-----------VMEVVERWADLPYLGDHVSYLDFIRAAAFYTGEL  239 (281)
T ss_dssp             -----HHHHHHHHHHHHHHHHHTTCCHH-----------HHHHHHHTTCTTCCCSSCCHHHHHHHHHHHHTSS
T ss_pred             -----HHHCCCHHHHHHHHHHHCCCCHH-----------HHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf             -----99743478899999997598999-----------9999998748443676425999999999998662


No 40 
>2paq_A 5'-deoxynucleotidase YFBR; HD domain phosphohydrolase, structural genomics, PSI, protein structure initiative; 2.10A {Escherichia coli K12} SCOP: a.211.1.1 PDB: 2par_A* 2pau_A*
Probab=87.95  E-value=0.51  Score=25.61  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=31.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHCC
Q ss_conf             66208889999999999988------399988999999888628
Q gi|254780286|r   72 RTRLMHTIEVSQIARSLARA------LRIDEDLVEAIALAHDFG  109 (410)
Q Consensus        72 rtRLtHslEVa~i~rsi~~~------l~~~~dlvea~~L~HDiG  109 (410)
                      -|=-.||..||.+|--|+..      .++|.+-|-..||.||++
T Consensus        30 EsVAeHs~~va~ia~~la~~~~~~~~~~vd~~k~~~maL~HDl~   73 (201)
T 2paq_A           30 ENVSEHSLQVAMVAHALAAIKNRKFGGNVNAERIALLAMYHDAS   73 (201)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             66999999999999999988887536788999999999971169


No 41 
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=86.67  E-value=0.53  Score=25.53  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHCC
Q ss_conf             62088899999999999883--99988999999888628
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARAL--RIDEDLVEAIALAHDFG  109 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~l--~~~~dlvea~~L~HDiG  109 (410)
                      |=-.||..||-+|-.++...  ++|.+=|-..||.||++
T Consensus        40 svAeHS~~~a~~a~~la~~~~~~vd~~k~~~maL~HDl~   78 (200)
T 3kh1_A           40 NDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIV   78 (200)
T ss_dssp             EHHHHHHHHHHHHHHTGGGSCTTCCHHHHHHHHHHTTTT
T ss_pred             CHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf             699999999999999887726778999999999996799


No 42 
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 2.30A {Agrobacterium tumefaciens str}
Probab=84.93  E-value=0.6  Score=25.12  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCH
Q ss_conf             6554432120798998753067
Q gi|254780286|r  211 ADDIAYDAHDIDDGVRAGLLTV  232 (410)
Q Consensus       211 ADDIAY~~hDlEDai~~gli~~  232 (410)
                      ++.|-.+...|=||+-..++.-
T Consensus       289 ~~~i~vs~~gLReGll~~~l~~  310 (508)
T 3hi0_A          289 PAKIAFSAQGVREGYLYSLLTE  310 (508)
T ss_dssp             CSEEEECSCCHHHHHHHTTSCH
T ss_pred             CCEEEECCCCHHHHHHHHHHHH
T ss_conf             9989988985889999998644


No 43 
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, actin) superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Probab=82.61  E-value=1.4  Score=22.38  Aligned_cols=20  Identities=10%  Similarity=0.207  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHC
Q ss_conf             65544321207989987530
Q gi|254780286|r  211 ADDIAYDAHDIDDGVRAGLL  230 (410)
Q Consensus       211 ADDIAY~~hDlEDai~~gli  230 (410)
                      ++.|-.+...|=||+-..++
T Consensus       287 ~~~i~vs~~glREGll~~~~  306 (513)
T 1u6z_A          287 IRELRLSDGALREGVLYEME  306 (513)
T ss_dssp             CSCBEECSCCHHHHHHHHHH
T ss_pred             CCEEEECCCCHHHHHHHHHH
T ss_conf             99899899827899999977


No 44 
>1ynb_A Hypothetical protein AF1432; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 1.76A {Archaeoglobus fulgidus dsm 4304} SCOP: a.211.1.1 PDB: 1yoy_A
Probab=81.33  E-value=2.1  Score=21.10  Aligned_cols=38  Identities=24%  Similarity=0.147  Sum_probs=29.3

Q ss_pred             CCCHHHHHHHHHHHHHHHHHCCCCH-HH--HHHHHHHHHCC
Q ss_conf             6620888999999999998839998-89--99999888628
Q gi|254780286|r   72 RTRLMHTIEVSQIARSLARALRIDE-DL--VEAIALAHDFG  109 (410)
Q Consensus        72 rtRLtHslEVa~i~rsi~~~l~~~~-dl--vea~~L~HDiG  109 (410)
                      -|=-.||.-||-+|-.|+...+.+. |+  |=..||.||++
T Consensus        37 EsVAeHs~r~A~ia~~la~~~~~~~~d~~k~~~maL~HDl~   77 (173)
T 1ynb_A           37 ESVAEHNFRAAIIAFILALKSGESVEKACKAATAALFHDLH   77 (173)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf             76899999999999998877388500299999999998989


No 45 
>1so2_A CGMP-inhibited 3',5'-cyclic phosphodiesterase B; PDE3B phosphodiesterase, hydrolase; HET: HG9 666; 2.40A {Homo sapiens} SCOP: a.211.1.2 PDB: 1soj_A*
Probab=80.82  E-value=0.39  Score=26.47  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=16.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             8706620888999999999998
Q gi|254780286|r   69 DHYRTRLMHTIEVSQIARSLAR   90 (410)
Q Consensus        69 d~~rtRLtHslEVa~i~rsi~~   90 (410)
                      --+|| -.|...|.|-.-.|-.
T Consensus        81 nPYHN-~~HA~dV~q~~~~lL~  101 (420)
T 1so2_A           81 IPYHN-RIHATDVLHAVWYLTT  101 (420)
T ss_dssp             CSSSS-HHHHHHHHHHHHHHTT
T ss_pred             CCCCC-HHHHHHHHHHHHHHHH
T ss_conf             99817-8899999999999995


No 46 
>1vj7_A Bifunctional RELA/SPOT; HD domain, alpha beta 2-layer sandwich, helix bundle, manganese, GDP, PPG2':3'P, (P)PPGPP, PPGPP; HET: GDP GPX; 2.10A {Streptococcus dysgalactiae subsp} SCOP: a.211.1.1 d.218.1.8
Probab=79.66  E-value=1.6  Score=22.02  Aligned_cols=57  Identities=25%  Similarity=0.240  Sum_probs=38.5

Q ss_pred             CCCEEECCHHHHHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCC
Q ss_conf             0001102734623275747871699987066208889999999999988399988999999888628
Q gi|254780286|r   43 DRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG  109 (410)
Q Consensus        43 D~dRIi~S~afRRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiG  109 (410)
                      |.+.|--.-.|-+-.+.-|+-..++ .+    .+|.++||.+=   + .++++++.+ +|||.||.=
T Consensus        24 d~~~i~kA~~fA~~~H~gQ~RksGe-py----i~Hp~~VA~iL---a-~l~~D~~ti-~AaLLHDvv   80 (393)
T 1vj7_A           24 DAAFVKKALDYATAAHFYQVRKSGE-PY----IVHPIQVAGIL---A-DLHLDAVTV-ACGFLHDVV   80 (393)
T ss_dssp             HHHHHHHHHHHHHHHTTTCBCTTSC-BT----THHHHHHHHHH---H-HTTCCHHHH-HHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCCCCCC-CH----HHHHHHHHHHH---H-HHCCCHHHH-HHHHHHCHH
T ss_conf             8999999999999996789489998-38----99999999999---8-849999999-999822438


No 47 
>3m5f_A Metal dependent phosphohydrolase; CAS3, prokaryotic immune system, HD-motif, structural genomics, PSI-2; 2.30A {Methanocaldococcus jannaschii}
Probab=77.11  E-value=3  Score=19.92  Aligned_cols=90  Identities=16%  Similarity=0.269  Sum_probs=44.2

Q ss_pred             CCHHHHHHHHHHHHHHHHH-------------CCCCH----HHHHHHHHHHHCCC--CCCCCCHHHHHHHHHHH---CCC
Q ss_conf             6208889999999999988-------------39998----89999998886289--98865478999999731---255
Q gi|254780286|r   73 TRLMHTIEVSQIARSLARA-------------LRIDE----DLVEAIALAHDFGH--PPFGHVGEDVLQELLSS---YGG  130 (410)
Q Consensus        73 tRLtHslEVa~i~rsi~~~-------------l~~~~----dlvea~~L~HDiGh--pPFGH~GE~al~~~~~~---~~g  130 (410)
                      |=..|+..|+.+...|...             ++++.    +++.-+|+-||||=  |-|-       +....+   ...
T Consensus        16 tL~eH~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~~~~~~~l~~~~~~~HD~GK~~~~FQ-------~~~~~~~~~~~~   88 (244)
T 3m5f_A           16 SLIDHVNDMVKYWERIKYRYLKTIKRALEALNIKLDIEKVDEFMKILIKLHDIGKASKIYQ-------RAIINDQEKLMG   88 (244)
T ss_dssp             EHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCCCHHHHHHHHHHHHHHTTGGGGBHHHH-------HHHHCTTSCCSS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHH-------HHHHCCCCCCCC
T ss_conf             5999999999999999998769999999986026888999999999999811100249999-------988526777878


Q ss_pred             CCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf             45776577887543211467010002478887763475778
Q gi|254780286|r  131 FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPI  171 (410)
Q Consensus       131 FegNaQ~~Rilt~LE~~~~~~~GLNLT~atL~~iiKyp~~~  171 (410)
                      ..|+.-|--++..+-.+.....  .+-..+.-+|+.|-++.
T Consensus        89 ~~H~~~s~~~~~~~~~~~~~~~--~~~~~~~~~v~~HH~~l  127 (244)
T 3m5f_A           89 FRHELVSAYYTYHILLKKFGDK--NLAFIGALTVMLHHEPI  127 (244)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCCH--HHHHHHHHHHHTTTSCC
T ss_pred             CCHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHCCCCC
T ss_conf             9869999999999988622257--89999999998668762


No 48 
>1vqr_A Hypothetical protein CJ0248; 6967725, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.25A {Campylobacter jejuni subsp} SCOP: a.211.1.3
Probab=70.83  E-value=1.9  Score=21.36  Aligned_cols=42  Identities=12%  Similarity=-0.009  Sum_probs=29.0

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHCCCCC
Q ss_conf             0662088899999999999883-99988999999888628998
Q gi|254780286|r   71 YRTRLMHTIEVSQIARSLARAL-RIDEDLVEAIALAHDFGHPP  112 (410)
Q Consensus        71 ~rtRLtHslEVa~i~rsi~~~l-~~~~dlvea~~L~HDiGhpP  112 (410)
                      ...-..||..+|..++.++... +.+++.+-++||.||||-..
T Consensus       122 ~~~~w~~s~~~a~~~~~~~~~~~~~~~~~a~~aGLLhdiG~l~  164 (297)
T 1vqr_A          122 TQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVI  164 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHH
T ss_conf             9999999999999999998761554799999978887504999


No 49 
>3nr1_A HD domain-containing protein 3; stringent response, pyrophosphohydrolase, HD (histidine and acid) family, PPGPP hydrolase, hydrolase; 1.90A {Homo sapiens}
Probab=68.34  E-value=3.6  Score=19.35  Aligned_cols=56  Identities=25%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             CEEECCHHHHHHCCCCEEEEC-CCCCCCCCCHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHC
Q ss_conf             011027346232757478716-99987066208889999999999988399-98899999988862
Q gi|254780286|r   45 DRMIHTTAFRRLKDKTQVFFH-RQRDHYRTRLMHTIEVSQIARSLARALRI-DEDLVEAIALAHDF  108 (410)
Q Consensus        45 dRIi~S~afRRL~~KTQVf~~-~~~d~~rtRLtHslEVa~i~rsi~~~l~~-~~dlvea~~L~HDi  108 (410)
                      .+|.-.-.|-.-.+.-|.-.- ...-+    ++|-++||.+-..   ..+. +++ +-+|||.||+
T Consensus         5 ~~l~~A~~~A~~~H~gQ~Rk~~~g~PY----i~H~~~VA~il~~---~~~~~d~~-~i~AalLHD~   62 (178)
T 3nr1_A            5 AQLLEAADFAARKHRQQRRKDPEGTPY----INHPIGVARILTH---EAGITDIV-VLQAALLHDT   62 (178)
T ss_dssp             HHHHHHHHHHHHHTTTCBCSSTTCCBT----THHHHHHHHHHHH---TSCCCCHH-HHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHHHHHHHHHH---HCCCCCHH-HHHHHHHHHH
T ss_conf             999999999999974897889999959----9999999999998---54888799-9999998678


No 50 
>3nqw_A CG11900; stringent response, pyrophosphohydrolase, HD (histidine and acid) family ,PPGPP hydrolase, hydrolase; 2.90A {Drosophila melanogaster}
Probab=66.97  E-value=2.9  Score=20.03  Aligned_cols=56  Identities=29%  Similarity=0.281  Sum_probs=31.4

Q ss_pred             EEECCHHHHHHCCCCEEEECCC-CCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHC
Q ss_conf             1102734623275747871699-98706620888999999999998839998899999988862
Q gi|254780286|r   46 RMIHTTAFRRLKDKTQVFFHRQ-RDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDF  108 (410)
Q Consensus        46 RIi~S~afRRL~~KTQVf~~~~-~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDi  108 (410)
                      |++---.|-.-.++-|.--.++ .-+    .+|.++||.+-...  ....+++ +-+|||.||+
T Consensus         8 k~~~A~~~A~~~H~gq~rk~g~~~PY----i~Hp~~Va~il~~~--~~~~d~~-~i~AalLHDv   64 (179)
T 3nqw_A            8 KFMECLQYAAFKHRQQRRKDPQETPY----VNHVINVSTILSVE--ACITDEG-VLMAALLHDV   64 (179)
T ss_dssp             HHHHHHHHHHHHSTTCBCSSSSCCBT----HHHHHHHHHHHHTT--TCCCCHH-HHHHHHTTTH
T ss_pred             HHHHHHHHHHHHHCCCCCCCCCCCCH----HHHHHHHHHHHHHH--CCCCCHH-HHHHHHHCCH
T ss_conf             99999999999875881778999848----98999999999984--0369899-9999993351


No 51 
>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45
Probab=47.58  E-value=3.8  Score=19.21  Aligned_cols=13  Identities=15%  Similarity=0.258  Sum_probs=5.4

Q ss_pred             CCCCCCCCCHHHH
Q ss_conf             2554577657788
Q gi|254780286|r  128 YGGFDHNIQSFRI  140 (410)
Q Consensus       128 ~~gFegNaQ~~Ri  140 (410)
                      +.|.|-|..+.++
T Consensus       214 ~~G~E~~~~~~~l  226 (541)
T 2ar0_A          214 FIGLELVPGTRRL  226 (541)
T ss_dssp             EEEEESCHHHHHH
T ss_pred             HHHHHCCHHHHHH
T ss_conf             6302066999999


No 52 
>2zxq_A Endo-alpha-N-acetylgalactosaminidase; broken TIM barrel, glycosidase, hydrolase; 2.00A {Bifidobacterium longum}
Probab=43.97  E-value=3.4  Score=19.50  Aligned_cols=22  Identities=32%  Similarity=0.940  Sum_probs=17.5

Q ss_pred             HHHCCCCCCCCCHHHH-----HHHHHH
Q ss_conf             8862899886547899-----999973
Q gi|254780286|r  105 AHDFGHPPFGHVGEDV-----LQELLS  126 (410)
Q Consensus       105 ~HDiGhpPFGH~GE~a-----l~~~~~  126 (410)
                      +||=|||-|||.|+|+     ++.+++
T Consensus       362 ghd~~~~~~~~~~~~~gg~~~~~~l~~  388 (1376)
T 2zxq_A          362 GHDSGHPDYGDIGQRLGGADDMNTMME  388 (1376)
T ss_dssp             STTSSTTCTTCBCGGGTHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf             866688750001434641899999998


No 53 
>2gz4_A Hypothetical protein ATU1052; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.50A {Agrobacterium tumefaciens str} SCOP: a.211.1.1
Probab=43.93  E-value=13  Score=15.27  Aligned_cols=76  Identities=24%  Similarity=0.296  Sum_probs=41.3

Q ss_pred             HHHCCCCEEECCHHH-HHHCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCH
Q ss_conf             434000011027346-2327574787169998706620888999999999998839998899999988862899886547
Q gi|254780286|r   39 EFQRDRDRMIHTTAF-RRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG  117 (410)
Q Consensus        39 ~f~rD~dRIi~S~af-RRL~~KTQVf~~~~~d~~rtRLtHslEVa~i~rsi~~~l~~~~dlvea~~L~HDiGhpPFGH~G  117 (410)
                      |..-+..=|=|+-|. -|-.+-|      .+++.=+=--||+-|+++.+.+..  +.++... -+||.||        +-
T Consensus        26 p~di~IeDIAh~Ls~~~R~~G~t------~~~~fySVAqHsvlv~~~~~~~~~--~~~~~~~-L~aLLHD--------A~   88 (207)
T 2gz4_A           26 PLDVEIADIAHGLARVARWNGQT------RGDHAFTVAQHCLIVETIFCRMCP--GATPDEM-QMALLHD--------AP   88 (207)
T ss_dssp             GGGCCHHHHHHHHTTCBSGGGCC------SSSSCCBHHHHHHHHHHHHHHHCT--TCCHHHH-HHHHTTT--------TT
T ss_pred             HHHCCHHHHHHHHHHHHHCCCCC------CCCCCCCHHHHHHHHHHHHHHHCC--CCCHHHH-HHHHHCC--------CH
T ss_conf             44486999999999874107866------898651199999999999998679--9998999-9998658--------78


Q ss_pred             HHHHHHHHHHCCCC
Q ss_conf             89999997312554
Q gi|254780286|r  118 EDVLQELLSSYGGF  131 (410)
Q Consensus       118 E~al~~~~~~~~gF  131 (410)
                      |.+++++-+-+..+
T Consensus        89 E~~~GD~~tP~K~~  102 (207)
T 2gz4_A           89 EYVIGDMISPFKSV  102 (207)
T ss_dssp             HHHHCCCCGGGGGT
T ss_pred             HHHHCCCCCHHHHH
T ss_conf             98864667178998


No 54 
>2rhk_A NS1, NS1A, non-structural protein 1; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Influenza a virus} PDB: 2kkz_A 3ee9_A 3ee8_A 2gx9_A 3m5r_A
Probab=42.59  E-value=3.1  Score=19.85  Aligned_cols=33  Identities=30%  Similarity=0.432  Sum_probs=25.6

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf             654789999997312554577657788754321
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC  146 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE~  146 (410)
                      ||.+|++-+..=--.||+|-|-++.|+-..|+.
T Consensus        85 GHt~eDvknAigvLIgGlEWndntvrvse~lQR  117 (140)
T 2rhk_A           85 GHTIEDVKNAIGVLIGGLEWNDNTVRVSKTLQR  117 (140)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTTCEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHEECCEEECCCEEEHHHHHHH
T ss_conf             986078887687644111566966764577888


No 55 
>3l4q_A NS1, NS1A, non-structural protein 1; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Influenza a virus}
Probab=40.66  E-value=4.2  Score=18.84  Aligned_cols=32  Identities=31%  Similarity=0.508  Sum_probs=19.3

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             65478999999731255457765778875432
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE  145 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE  145 (410)
                      ||.+|++-+..=--.||+|-|-++.|+-..|+
T Consensus       102 GHt~eDVknAigvLIgGlEWndNtvrvse~lQ  133 (164)
T 3l4q_A          102 GHTAEDVKNAVGVLIGGLEWNDNTVRVSETLQ  133 (164)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             CCCHHHHHHHHHHEECCEEECCCEEEHHHHHH
T ss_conf             98617887768754411156696675457788


No 56 
>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}
Probab=40.18  E-value=5.7  Score=17.85  Aligned_cols=13  Identities=15%  Similarity=0.330  Sum_probs=6.7

Q ss_pred             CCCCCCCCHHHHH
Q ss_conf             5545776577887
Q gi|254780286|r  129 GGFDHNIQSFRIV  141 (410)
Q Consensus       129 ~gFegNaQ~~Ril  141 (410)
                      .|.|=|..+.++.
T Consensus       252 ~G~e~~~~~~~la  264 (542)
T 3lkd_A          252 FGQELNTSTYNLA  264 (542)
T ss_dssp             EEEESCHHHHHHH
T ss_pred             EEEECCHHHHHHH
T ss_conf             7442667999999


No 57 
>3d6r_B NS1, NS1A, non-structural protein 1; effector domain, alternative splicing, cytoplasm, HOST-virus interaction; 2.00A {Influenza a virus} PDB: 3kwi_A 3kwg_A
Probab=38.70  E-value=4.7  Score=18.48  Aligned_cols=32  Identities=31%  Similarity=0.457  Sum_probs=25.3

Q ss_pred             CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
Q ss_conf             65478999999731255457765778875432
Q gi|254780286|r  114 GHVGEDVLQELLSSYGGFDHNIQSFRIVTELE  145 (410)
Q Consensus       114 GH~GE~al~~~~~~~~gFegNaQ~~Rilt~LE  145 (410)
                      ||..|++-+..=--.||+|-|-++.|+-..|+
T Consensus        96 GHt~edvknAigvLIgGleWNdNtvrvse~lQ  127 (158)
T 3d6r_B           96 GHSTEDVKNAIGILIGGLEWNDNSIRASENIQ  127 (158)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTTCEEEECHHHH
T ss_pred             CCCCHHHHHHHHHEECCEEECCCEEEHHHHHH
T ss_conf             98707877668754410156596675667788


No 58 
>1ufb_A TT1696 protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.90A {Thermus thermophilus} SCOP: a.24.16.3
Probab=37.04  E-value=12  Score=15.57  Aligned_cols=24  Identities=25%  Similarity=0.368  Sum_probs=14.9

Q ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             99999888628998865478999999
Q gi|254780286|r   99 VEAIALAHDFGHPPFGHVGEDVLQEL  124 (410)
Q Consensus        99 vea~~L~HDiGhpPFGH~GE~al~~~  124 (410)
                      +.| .|.+ .|.||.+|..-..+..+
T Consensus        42 lKA-ll~~-~g~~pk~H~l~~l~~~l   65 (127)
T 1ufb_A           42 LKG-LHLA-RGQVAWGHSILDLLADL   65 (127)
T ss_dssp             HHH-HHHH-TTCCCCSSCHHHHHHTS
T ss_pred             HHH-HHHH-CCCCCCCCCHHHHHHHH
T ss_conf             999-9998-59999873599999989


No 59 
>3ecq_A Protein SPR0328, endo-alpha-N-acetylgalactosaminidase; distorted (beta/alpha)8 (TIM) barrel glycoside hydrolase domain, cell WALL; 2.90A {Streptococcus pneumoniae}
Probab=36.78  E-value=5.2  Score=18.18  Aligned_cols=16  Identities=31%  Similarity=0.781  Sum_probs=14.0

Q ss_pred             HHHCCCCCCCCCHHHH
Q ss_conf             8862899886547899
Q gi|254780286|r  105 AHDFGHPPFGHVGEDV  120 (410)
Q Consensus       105 ~HDiGhpPFGH~GE~a  120 (410)
                      +||=|||-+||.|+++
T Consensus       620 GHDSahpdY~~~~~Ra  635 (1531)
T 3ecq_A          620 GHDSGHLNYADIGKRI  635 (1531)
T ss_dssp             STTSSTTCTTCBCGGG
T ss_pred             CCCCCCCCHHHCCCCC
T ss_conf             8666896410014446


No 60 
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5- methylpyrimidin-2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*
Probab=34.45  E-value=8.1  Score=16.76  Aligned_cols=21  Identities=0%  Similarity=-0.282  Sum_probs=15.6

Q ss_pred             CHHHHHHCCCCEEEECCCCCC
Q ss_conf             734623275747871699987
Q gi|254780286|r   50 TTAFRRLKDKTQVFFHRQRDH   70 (410)
Q Consensus        50 S~afRRL~~KTQVf~~~~~d~   70 (410)
                      ..+++|+..+.+++..+-+..
T Consensus        55 ~~~~~~~~~~~~i~G~did~~   75 (421)
T 2ih2_A           55 RAFREAHGTAYRFVGVEIDPK   75 (421)
T ss_dssp             HHHHHHHCSCSEEEEEESCTT
T ss_pred             HHHHHHCCCCCEEEEEECCHH
T ss_conf             999986776786999979899


No 61 
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=30.96  E-value=17  Score=14.38  Aligned_cols=23  Identities=30%  Similarity=0.626  Sum_probs=20.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             28998865478999999731255
Q gi|254780286|r  108 FGHPPFGHVGEDVLQELLSSYGG  130 (410)
Q Consensus       108 iGhpPFGH~GE~al~~~~~~~~g  130 (410)
                      |||-|+-..-|+-|.+.|..+|.
T Consensus        15 V~nlp~~~~te~~l~~~F~~~G~   37 (96)
T 2kvi_A           15 IGNLPLKNVSKEDLFRIFSPYGH   37 (96)
T ss_dssp             EESSTTSCCCHHHHHHHHTTTCC
T ss_pred             EECCCCCCCCHHHHHHHHHHCCC
T ss_conf             93599687899999999987098


No 62 
>1lgh_B LH II, B800/850, light harvesting complex II; bacteriochlorophyll, dexter energy transfer, foerster exciton transfer mechanism; HET: BCL LYC DET HTO; 2.40A {Phaeospirillum molischianum} SCOP: f.3.1.1
Probab=27.67  E-value=23  Score=13.46  Aligned_cols=16  Identities=38%  Similarity=0.576  Sum_probs=9.8

Q ss_pred             ECCCCHHHHHHHHHHH
Q ss_conf             0673369999999998
Q gi|254780286|r  380 LAGMTDSYAIREHHIL  395 (410)
Q Consensus       380 IAGMTD~YAi~ly~kL  395 (410)
                      .+|+||..|.+.|...
T Consensus         5 ~sGLT~~EA~EfH~~f   20 (45)
T 1lgh_B            5 LSGLTEEEAIAVHDQF   20 (45)
T ss_dssp             SSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHH
T ss_conf             6889999999999999


No 63 
>2huo_A Inositol oxygenase; protein-substrate complex, HD domain fold, oxidoreductase; HET: INS; 2.00A {Mus musculus} SCOP: a.211.1.4 PDB: 3bxd_A*
Probab=24.91  E-value=25  Score=13.19  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=16.2

Q ss_pred             CCCHHHHHHHHHHHHCCCCCC
Q ss_conf             999889999998886289988
Q gi|254780286|r   93 RIDEDLVEAIALAHDFGHPPF  113 (410)
Q Consensus        93 ~~~~dlvea~~L~HDiGhpPF  113 (410)
                      +.++|=.+-+||.||+|--.+
T Consensus       114 ~p~~dW~qL~GLiHDLGKvl~  134 (289)
T 2huo_A          114 HPDKDWFHLVGLLHDLGKIMA  134 (289)
T ss_dssp             CTTCHHHHHHHHHTTGGGGGG
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
T ss_conf             899106775657755324642


No 64 
>3eu6_A NS1, nonstructural protein 1; H5N1, cytoplasm, HOST-virus interaction, interferon antiviral system evasion, nucleus, RNA-binding; 2.70A {Influenza virus} PDB: 3f5t_A
Probab=24.21  E-value=9.6  Score=16.22  Aligned_cols=11  Identities=27%  Similarity=0.537  Sum_probs=8.9

Q ss_pred             CCCHHHHHHHH
Q ss_conf             00024788877
Q gi|254780286|r  153 GINLTWETLEG  163 (410)
Q Consensus       153 GLNLT~atL~~  163 (410)
                      ||+.--||+.|
T Consensus        51 gldie~at~~g   61 (215)
T 3eu6_A           51 GLDIETATRAG   61 (215)
T ss_dssp             TCCHHHHHHHH
T ss_pred             CCCHHHHHHHH
T ss_conf             52405877777


No 65 
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=22.29  E-value=28  Score=12.76  Aligned_cols=11  Identities=36%  Similarity=0.277  Sum_probs=4.6

Q ss_pred             HHHHHHHCCHH
Q ss_conf             89987530677
Q gi|254780286|r  223 DGVRAGLLTVD  233 (410)
Q Consensus       223 Dai~~gli~~~  233 (410)
                      |-..+|++=++
T Consensus       203 DiwSlGvilye  213 (327)
T 3a62_A          203 DWWSLGALMYD  213 (327)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             72326899999


No 66 
>1o3u_A Conserved hypothetical protein TM0613; structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 1.75A {Thermotoga maritima} SCOP: a.24.16.3
Probab=21.75  E-value=29  Score=12.69  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=11.5

Q ss_pred             HHHHHCCCCCCCCCHHHHHHHH
Q ss_conf             9888628998865478999999
Q gi|254780286|r  103 ALAHDFGHPPFGHVGEDVLQEL  124 (410)
Q Consensus       103 ~L~HDiGhpPFGH~GE~al~~~  124 (410)
                      .|... |-||.+|.-..-++.+
T Consensus        50 ll~~~-g~~pktH~l~~L~~~l   70 (135)
T 1o3u_A           50 VFQRM-GAQAWGYSVPDFLGEL   70 (135)
T ss_dssp             HHHHH-TCCCCCSSHHHHHHHH
T ss_pred             HHHHC-CCCCCCCCHHHHHHHH
T ss_conf             99985-9999777799999999


No 67 
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=21.15  E-value=29  Score=12.60  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=19.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHHCCC
Q ss_conf             28998865478999999731255
Q gi|254780286|r  108 FGHPPFGHVGEDVLQELLSSYGG  130 (410)
Q Consensus       108 iGhpPFGH~GE~al~~~~~~~~g  130 (410)
                      |||-|++..=|+.|.++|..+|.
T Consensus        32 V~nL~~~~~te~~l~~~F~~~G~   54 (110)
T 1wf1_A           32 IGNLNTALVKKSDVETIFSKYGR   54 (110)
T ss_dssp             ECSCCCSSCCHHHHHHHHGGGSC
T ss_pred             EECCCCCCCCHHHHHHHHHHCCC
T ss_conf             97999464999999999870598


No 68 
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=21.10  E-value=23  Score=13.46  Aligned_cols=35  Identities=26%  Similarity=0.348  Sum_probs=14.9

Q ss_pred             CCCHHHHHHHHHHHHH-----HHHHCCCCHHHHHHHHHHH
Q ss_conf             6620888999999999-----9988399988999999888
Q gi|254780286|r   72 RTRLMHTIEVSQIARS-----LARALRIDEDLVEAIALAH  106 (410)
Q Consensus        72 rtRLtHslEVa~i~rs-----i~~~l~~~~dlvea~~L~H  106 (410)
                      |.-||--+.-|-..++     ||..+|+++.-|-++||+.
T Consensus        11 r~elte~Il~AK~~KGlTwe~IAe~vG~S~v~vaaa~lGQ   50 (156)
T 1dw9_A           11 RLDLADAILLSKAKKDLSFAEIADGTGLAEAFVTAALLGQ   50 (156)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHTTSSSCHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHCC
T ss_conf             8999999999999849999999999797999999998457


Done!