RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] (410 letters) >2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase, DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily; 2.20A {Thermus thermophilus HB8} Length = 376 Score = 292 bits (747), Expect = 1e-79 Identities = 142/380 (37%), Positives = 199/380 (52%), Gaps = 23/380 (6%) Query: 17 YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76 YA + GR +PE SL R+ +Q+DRDR++HTTAFRRL+ KTQV D+YRTRL Sbjct: 19 YAQKARDTRGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLT 78 Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 HT+EV+Q++RS+ARAL ++EDL EAIAL+HD GHPPFGH GE VL L+ +GGF+HN Q Sbjct: 79 HTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALMQDHGGFEHNAQ 138 Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLS 196 + RI+T LE Y F G+NLT+E LEG+ H Y Sbjct: 139 ALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAA------------------YSPGFKPL 180 Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLD 256 +LE QV ++D IAY AHD+DDG RAGLL + LKE+ L+ L Sbjct: 181 YEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLP 240 Query: 257 DKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI 316 + LVR+ + + I + +R+ + +R R+ Sbjct: 241 ELD-RRVLVRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGXXXXXXXXXX 299 Query: 317 KSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHV 376 L++ YRHP ++ + V+ LF+AY P + E + + + R V Sbjct: 300 XXFLMERFYRHPEVLRERRKAEAVLEGLFAAYTRYPELL----PREVQAKIPEEGLERAV 355 Query: 377 GDYLAGMTDSYAIREHHILF 396 DY+AGMTD +A+ + L Sbjct: 356 CDYIAGMTDRFALEAYRRLS 375 >2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase; deoxyguanosinetriphosphate triphsphohydrolase; 2.35A {Pseudomonas syringae PV} Length = 451 Score = 275 bits (704), Expect = 1e-74 Identities = 95/437 (21%), Positives = 150/437 (34%), Gaps = 60/437 (13%) Query: 22 TQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEV 81 + LG+ L RS F +D DR+I + AFRRL KTQV DH TRL H++EV Sbjct: 11 RERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEV 70 Query: 82 SQIARSLARALRID--------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSS 127 S + RSL + +V++ LAHD G+PPFGH GED ++ + Sbjct: 71 SCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQ 130 Query: 128 YGG-----------------FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGP 170 G F+ N Q FR++T+LE D G LT+ TL + + Sbjct: 131 AAGRGWLDAMSETERNDFLNFEGNAQGFRVLTQLEYHQFDG-GTRLTYATLGTYLKYPWT 189 Query: 171 ILPQDLDKPRIIPRIFSDYYHIHGLSLANF------------ASLEGQVAAIADDIAYDA 218 D + +A + ADDI Y Sbjct: 190 ARHADSLGYKKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLMEAADDICYAL 249 Query: 219 HDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVIT 278 D++DG+ LL ++ + L L + Y L + +E + Sbjct: 250 IDLEDGLEMDLLDYAEVESL-LLGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTN 308 Query: 279 VSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIA 338 + + + A+ G + K M K +++ Sbjct: 309 AAARAFVE-QQDALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAY 367 Query: 339 NVIRNLFSAYMSDPRKMRGCNQLEY--------------ERDMTDSIKARHVGDYLAGMT 384 + L +A+ + G + + + D++AGMT Sbjct: 368 TTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMT 427 Query: 385 DSYAIREHHILFGYIPD 401 DSYA + G + Sbjct: 428 DSYASEMAREMTGRSGE 444 >3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target 10395N, PSI-2, protein structure initiative; 1.95A {Leeuwenhoekiella blandensis MED217} Length = 444 Score = 256 bits (655), Expect = 6e-69 Identities = 83/433 (19%), Positives = 152/433 (35%), Gaps = 70/433 (16%) Query: 26 GRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIA 85 + ++ TR F+ D DR+I + FR L+DKTQV + D TRL H++EVS + Sbjct: 17 AKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVG 76 Query: 86 RSLARAL-------------------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLS 126 RSL R + +V A ALAHD G+PPFGH GE + E Sbjct: 77 RSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEFFK 136 Query: 127 SYGG-----------------FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNG 169 + G F+ N F+++++ + G+ L++ TL + + Sbjct: 137 NGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQSKPGA--QGGLRLSYATLGAFMKYPK 194 Query: 170 PILPQ----------------DLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADD 213 LP + + + ++ + ADD Sbjct: 195 ESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADD 254 Query: 214 IAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKR-LVHELVRRQITAM 272 I Y D +DG+ GL+ + E + Y L + V L I + Sbjct: 255 ICYTIIDFEDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTL 314 Query: 273 VEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMT 332 + + + K + + +ID S+ + +I ++ ++ +Y ++ Sbjct: 315 INESVDTFMKYEEEILAG------TFDQSLIDKSNYQAQI-TDIINLSIERIYNSREVIE 367 Query: 333 CCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDM--------TDSIKARHVGDYLAGMT 384 ++ L A ++ + + + ++ MT Sbjct: 368 KEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQICAEVSTMT 427 Query: 385 DSYAIREHHILFG 397 D A+R + + G Sbjct: 428 DGKALRNYKKIKG 440 >2hek_A Hypothetical protein; predominantly alpha helical protein with GDP binding site and active site being FAR from EACH other, structural genomics; HET: GDP; 2.00A {Aquifex aeolicus} SCOP: a.211.1.1 Length = 371 Score = 86.9 bits (214), Expect = 7e-18 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 3/158 (1%) Query: 39 EFQRDRDRMIHTTAFRRLKDKTQVFFHRQ--RDHYRTRLMHTIEVSQIARSLARALRIDE 96 R+I + F+RL+ Q+ TR H++ V I + +L++ E Sbjct: 14 RVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKE 73 Query: 97 -DLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGIN 155 +LV+ L HD GHPPF H E +L S + I+ I L+ Y+ D Sbjct: 74 KELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIER 133 Query: 156 LTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193 L TL +L + + R+ + Sbjct: 134 LVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAY 171 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 77.3 bits (190), Expect = 5e-15 Identities = 83/556 (14%), Positives = 153/556 (27%), Gaps = 229/556 (41%) Query: 2 IVVRKLGFGHQKKVA-YAADPTQSLGRMYPE--KRSLTRSEFQRD--RDRMIHTTAFRRL 56 +V + LG+ V+ + + LT EF+ IH A + L Sbjct: 60 LVGKFLGY-----VSSLVEPSKVGQ---FDQVLNLCLT--EFENCYLEGNDIHALAAKLL 109 Query: 57 KDKTQVFFHRQ---RDHYRTRLMHTIEVSQIARS-LARALRIDEDLVEAIALAHDFGHPP 112 ++ + +++ R+M + + S L RA+ + AI FG Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQ- 163 Query: 113 FGHVGE--DVLQELLSSYGGFDHNIQSF-RIVTEL--ECSYADFD-------GIN-LTWE 159 G+ + + L++L +Y + + E E D G+N L W Sbjct: 164 -GNTDDYFEELRDLYQTYHVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW- 218 Query: 160 TLEGLIGHNGPILPQDLDKPRIIPRIFSDY-------YHIHGL-SLANFA---------- 201 L+ P P DY + G+ LA++ Sbjct: 219 ----------------LENPSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260 Query: 202 -----SLEG-----Q---VA---AIADD-----------------IAYDAHD-------- 220 L+G Q A A D I ++ Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320 Query: 221 ---IDDGVRAG------LLTVDMLKEISFLEKHIASLHDLYGHL-DDKRLVHELV--RRQ 268 ++D + +L++ L ++ ++ + HL K++ LV + Sbjct: 321 PSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKN 376 Query: 269 ITAMVEDVIT---------------------VSQKRIAH--LKP-------------HAI 292 + V++ + Q RI K H+ Sbjct: 377 L------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430 Query: 293 HDIRSAGYRII-DFSDEMTLVDKEIK-SMLVKYVY--------RHPSIMTCCNQIANVIR 342 + A I D + + VY R S ++ Sbjct: 431 L-LVPASDLINKDLVKN----NVSFNAKDIQIPVYDTFDGSDLRVLS--------GSISE 477 Query: 343 NLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDY-------LAGMT----DSYAIRE 391 + + P +E T KA H+ D+ L +T D +R Sbjct: 478 RIVDCIIRLP-----VK---WET--TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527 Query: 392 HHILFGYIPDFAVDYS 407 I+ G +D + Sbjct: 528 --IVAG-----TLDIN 536 Score = 57.3 bits (138), Expect = 6e-09 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 108/321 (33%) Query: 60 TQVFFH--RQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG 117 T FF + ++ + L + A D++ L F G+V Sbjct: 24 TASFFIASQLQEQFNKIL------PEPTEGFAA----DDEPTTPAELVGKF----LGYV- 68 Query: 118 EDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLD 177 +++ S G FD + +TE E Y + + I+ L L Q+ D Sbjct: 69 SSLVEP--SKVGQFDQVLNL--CLTEFENCYLEGNDIH-------ALAAK----LLQEND 113 Query: 178 KPRIIP---RIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTV-- 232 + + +Y +A + +A+ + +G A L+ + Sbjct: 114 TT--LVKTKELIKNYIT--ARIMAKRPFDKKSNSALFRAVG-------EG-NAQLVAIFG 161 Query: 233 ------DMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH 286 D +E+ L+ Y L V D+I S + ++ Sbjct: 162 GQGNTDDYFEEL-------RDLYQTYHVL-----------------VGDLIKFSAETLSE 197 Query: 287 L--KPHAIHDIRSAGYRIIDF-SDEMTLVDKE------IKSM-------LVKYVYRHPSI 330 L + + G I+++ + DK+ I S L YV Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYV------ 250 Query: 331 MTCCNQIANV----IRNLFSA 347 +T ++ +R+ Sbjct: 251 VTA--KLLGFTPGELRSYLKG 269 Score = 28.4 bits (63), Expect = 3.3 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 30/121 (24%) Query: 31 EKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTI-EVSQIARSLA 89 EK L+ ++F + ++ AF LK K + D T H++ E + +A SLA Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----PAD--ATFAGHSLGEYAALA-SLA 1774 Query: 90 RALRIDEDLVEA---------IALAHD-FGHPPFGHVG-----------EDVLQELLSSY 128 + I E LVE +A+ D G +G + ++ LQ ++ Sbjct: 1775 DVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833 Query: 129 G 129 G Sbjct: 1834 G 1834 >2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.20A {Bacteroides thetaiotaomicron vpi-5482} Length = 410 Score = 59.7 bits (144), Expect = 1e-09 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 20/112 (17%) Query: 46 RMIHTTAFRRLKDKTQV----FFHRQRDHYRTRLMHTIEVSQIARSLARALR-------- 93 ++ +RL QV + H TR H++ + L Sbjct: 26 DIVRHPLLQRLTRIKQVGLSSVVYPGAQH--TRFQHSLGAFYLMSEAITQLTSKGNFIFD 83 Query: 94 IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145 + + V+A L HD GH PF HV ED + + G H S ++ + Sbjct: 84 SEAEAVQAAILLHDIGHGPFSHVLEDTIVQ------GVSHEEISLMLMERMN 129 >3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics, PSI-2, protein structure initiative; HET: DGT DTP; 2.40A {Enterococcus faecalis V583} PDB: 2o6i_A* Length = 480 Score = 47.1 bits (111), Expect = 8e-06 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 30/162 (18%) Query: 46 RMIHTTAFRRLKDKTQV----FFHRQRDHYRTRLMHTIEVSQIARSLARALRI------- 94 +I++ +RL+ Q+ F +H +R H++ V +I R + + Sbjct: 57 DLINSAEVQRLRRIKQLGTSSFTFHGAEH--SRFSHSLGVYEITRRICEIFQRNYSVERL 114 Query: 95 --------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146 + + AL HD GH P+ H +H + +I+T E Sbjct: 115 GENGWNDDERLITLCAALLHDVGHGPYSHT--------FEHIFDTNHEAITVQIITSPET 166 Query: 147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSD 188 ++ + E + P I +I +D Sbjct: 167 EVYQILN-RVSADFPEKVASVITKQYPNPQVVQMISSQIDAD 207 >3dto_A BH2835 protein; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Bacillus halodurans} SCOP: a.211.1.1 Length = 223 Score = 42.4 bits (99), Expect = 2e-04 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 7/118 (5%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 H V+ +A+++ ++D +V+ AL HD E Q+L+ Q Sbjct: 29 HIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQ 88 Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHG 194 ++ + + G + T E ++ QD D+ + I + Sbjct: 89 KIDHTMDIINTISFKGGHGQSLATREAMV-------VQDADRLDALGAIGIARTFAYS 139 >2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural genomics, joint center for structural genomics, JCSG, PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans} Length = 188 Score = 39.4 bits (91), Expect = 0.002 Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGH 110 R HTI V + A LA+ D+ E A+ HD+ Sbjct: 19 RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55 >3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824} Length = 190 Score = 38.2 bits (88), Expect = 0.003 Identities = 10/37 (27%), Positives = 13/37 (35%) Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGH 110 R H++ V A LA D + L HD Sbjct: 20 RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56 >2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical protein TIGR00488, structural genomics; HET: GDP MES; 1.85A {Streptococcus agalactiae serogroup V} Length = 196 Score = 37.4 bits (86), Expect = 0.006 Identities = 11/36 (30%), Positives = 16/36 (44%) Query: 74 RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109 R H + V + A LA D++ AL HD+ Sbjct: 27 RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYA 62 >2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Uncultured thermotogales bacterium} SCOP: a.211.1.1 Length = 220 Score = 36.3 bits (83), Expect = 0.012 Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED 119 HT V + A +A + D AL HD P G D Sbjct: 37 HTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVD 79 >3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2, protein structure initiative; 3.00A {Listeria innocua CLIP11262} SCOP: a.211.1.1 Length = 209 Score = 36.2 bits (83), Expect = 0.013 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 6/107 (5%) Query: 59 KTQVFFHRQRDHYRTR--LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFG-- 114 + + H ++ T H V ++++ + D +E AL HD+ Sbjct: 9 SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTD 68 Query: 115 -HVGEDVLQELLSSYGGFDHNIQSF-RIVTELECSYADFDGINLTWE 159 L + + I+ RI+ + LT E Sbjct: 69 EQEATKTLINWMETKEIPSELIKKIIRIIQSVSFKKGKNTFKALTIE 115 >3djb_A Hydrolase, HD family; all alpha-helical protein., structural genomics, PSI-2, protein structure initiative; 2.90A {Bacillus thuringiensis serovarkonkukian} SCOP: a.211.1.1 Length = 223 Score = 35.4 bits (81), Expect = 0.024 Identities = 17/96 (17%), Positives = 36/96 (37%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 H V ++A SL+ + ++E AL HD E ++++ + Sbjct: 29 HIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVSDWLEELHVEEE 88 Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPIL 172 + V + + + G E++EG + + L Sbjct: 89 ESKHVLHIIANMSYKGGHGGKVESIEGKLVQDADRL 124 >3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer, structural genomics, PSI-2, protein structure initiative; 1.71A {Bifidobacterium adolescentis ATCC15703} Length = 282 Score = 32.0 bits (72), Expect = 0.28 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 34/232 (14%) Query: 82 SQIARSLARALRIDEDL----------VEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131 +IA + +A R + + I A D G GE+ QE+ + G Sbjct: 34 DRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMI---GENRPQEVTAKAEGL 90 Query: 132 DHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH 191 + + D ++ + I +K + + Sbjct: 91 ARRCAERGFSLGVAGAAPDAAAEHIPF----------HLIGQLQSNKIGKVLPVVDTIES 140 Query: 192 IHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEK----HIAS 247 + + LA S I + + ++ + ++G ++ + + Sbjct: 141 VDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQG 200 Query: 248 LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAG 299 L + H+ D+ ++RR + + + T + S G Sbjct: 201 LMTIGAHVHDE----TVIRRGFSHLRK---TRDLILASGEPGTDRCRELSMG 245 >3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural genomics, PSI-2, protein structure initiative; 3.30A {Escherichia coli k-12} Length = 239 Score = 31.2 bits (70), Expect = 0.39 Identities = 9/43 (20%), Positives = 13/43 (30%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED 119 H V A+ LA +D ++ HD H Sbjct: 29 HFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQ 71 >3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Methylococcus capsulatus} Length = 288 Score = 30.9 bits (69), Expect = 0.56 Identities = 11/115 (9%), Positives = 25/115 (21%), Gaps = 3/115 (2%) Query: 70 HYRTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSY 128 Y ++ + +S+ + + L D G + E L Sbjct: 105 DYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKA 164 Query: 129 GGFDHN--IQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRI 181 G + E + ++ L + + R Sbjct: 165 DGEALIALERERFATDHDELTRMLLTDWGFPQVFIDALQLSQQDEIRDEGRTGRF 219 >2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1 Length = 231 Score = 30.4 bits (68), Expect = 0.79 Identities = 13/50 (26%), Positives = 21/50 (42%) Query: 77 HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLS 126 H V+++AR LA+ + +L A A HD Q+L+ Sbjct: 34 HLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIV 83 >3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A Length = 377 Score = 29.4 bits (65), Expect = 1.6 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 7/123 (5%) Query: 191 HIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHD 250 + G+ A + + D + VR + +L + ++L Sbjct: 129 LLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQT 188 Query: 251 LYGHLDDKRLVH----ELVRRQITA-MVEDVITVSQKRIAH--LKPHAIHDIRSAGYRII 303 L H R Q+T ++ + ++ + H L+P I + G + Sbjct: 189 FGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLT 248 Query: 304 DFS 306 F Sbjct: 249 GFE 251 >3mt5_A Potassium large conductance calcium-activated CHA subfamily M, alpha member 1; potassium channel, membrane protein, transport protein; 3.00A {Homo sapiens} Length = 726 Score = 29.2 bits (64), Expect = 1.8 Identities = 11/113 (9%), Positives = 34/113 (30%), Gaps = 9/113 (7%) Query: 287 LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFS 346 L+ H + + D+ + + + + ++ ++ NLFS Sbjct: 122 LQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSC--------LAQGLSTMLANLFS 173 Query: 347 AYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYI 399 S + Q Y +++ + ++ G++ + + Sbjct: 174 -MRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLL 225 >1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH, isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A* 1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A* Length = 533 Score = 28.3 bits (63), Expect = 3.4 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 14/91 (15%) Query: 155 NLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI 214 N+ ++T EG+ N ++ + + SL S +D Sbjct: 91 NVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSP--------NDF 142 Query: 215 AYDAHDIDDG------VRAGLLTVDMLKEIS 239 DI++ R+ +L D+ + + Sbjct: 143 VVSGWDINNADLYEAMQRSQVLEYDLQQRLK 173 >1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase; 1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A* 1ro9_A* 1ror_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A* 1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A* 3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* 3g58_A* ... Length = 377 Score = 28.0 bits (62), Expect = 3.6 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 12/63 (19%) Query: 63 FFHRQRDHYRTRL-----MHTIEVSQIARSLARALRIDEDL--VEAI-----ALAHDFGH 110 + DHY + + +H +V+Q L +D +E + A HD H Sbjct: 68 YMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDH 127 Query: 111 PPF 113 P Sbjct: 128 PGV 130 >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} Length = 460 Score = 28.1 bits (62), Expect = 4.0 Identities = 4/23 (17%), Positives = 7/23 (30%) Query: 207 VAAIADDIAYDAHDIDDGVRAGL 229 I + + + ID G Sbjct: 371 YRCIEEGVISNESLIDIMFILGF 393 >1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP: c.1.8.5 d.26.3.1 Length = 435 Score = 28.0 bits (61), Expect = 4.5 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 2/93 (2%) Query: 131 FDHNIQSFRIVTELECSYADFDGINLTWE--TLEGLIGHNGPILPQDLDKPRIIPRIFSD 188 N+ +F + FDGI++ WE + NG D + + F Sbjct: 155 IKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRK 214 Query: 189 YYHIHGLSLANFASLEGQVAAIADDIAYDAHDI 221 +G + L + A DI D Sbjct: 215 QLDAYGSTNNKKYVLSAFLPANPADIDAGGWDD 247 >1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, JCSG, protein structure initiative, PSI; HET: NAD; 2.30A {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3 Length = 537 Score = 27.9 bits (62), Expect = 4.6 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 31/100 (31%) Query: 155 NLTWETLEGLIGHN--GPI-------LPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEG 205 +TW T EG N G + L D I F D + + + Sbjct: 102 AMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDI-----VPILSP----- 151 Query: 206 QVAAIADDIAYDAHDIDDG------VRAGLLTVDMLKEIS 239 +D+ DI D RA + ++ +++ Sbjct: 152 ------NDLIISGWDISDSNLYEAMGRAKVFEPELQEKLR 185 >3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D; PDE4D, UCR2, alternative splicing, cytoplasm, cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo sapiens} PDB: 3g45_A* Length = 421 Score = 27.3 bits (60), Expect = 6.8 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 12/63 (19%) Query: 63 FFHRQRDHYRTRL-----MHTIEVSQIARSLARALRIDEDL--VEAI-----ALAHDFGH 110 + DHY + +H +V Q L ++ +E + + HD H Sbjct: 147 YLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDH 206 Query: 111 PPF 113 P Sbjct: 207 PGV 209 >3m1t_A Putative phosphohydrolase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis} Length = 275 Score = 27.1 bits (59), Expect = 7.0 Identities = 10/68 (14%), Positives = 21/68 (30%) Query: 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120 + +T EV+ I + LA+ L + + H G + V Sbjct: 93 GAVPKVEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAV 152 Query: 121 LQELLSSY 128 + ++ Sbjct: 153 AATISAAV 160 >2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster} Length = 325 Score = 27.1 bits (60), Expect = 8.3 Identities = 10/38 (26%), Positives = 18/38 (47%) Query: 289 PHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYR 326 P H + Y + F++E+TL E+ +M+ K Sbjct: 78 PEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANL 115 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.325 0.140 0.415 Gapped Lambda K H 0.267 0.0442 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,751,118 Number of extensions: 183854 Number of successful extensions: 736 Number of sequences better than 10.0: 1 Number of HSP's gapped: 705 Number of HSP's successfully gapped: 47 Length of query: 410 Length of database: 5,693,230 Length adjustment: 95 Effective length of query: 315 Effective length of database: 3,390,050 Effective search space: 1067865750 Effective search space used: 1067865750 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 58 (26.8 bits)