RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate
triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus
str. psy62]
         (410 letters)



>2dqb_A Deoxyguanosinetriphosphate triphosphohydrolase, putative; dntpase,
           DNTP, single-stranded DNA, DNA, dGTPase, HD superfamily;
           2.20A {Thermus thermophilus HB8}
          Length = 376

 Score =  292 bits (747), Expect = 1e-79
 Identities = 142/380 (37%), Positives = 199/380 (52%), Gaps = 23/380 (6%)

Query: 17  YAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLM 76
           YA     + GR +PE  SL R+ +Q+DRDR++HTTAFRRL+ KTQV      D+YRTRL 
Sbjct: 19  YAQKARDTRGRAHPEPESLYRTPYQKDRDRILHTTAFRRLEYKTQVLPGWAGDYYRTRLT 78

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
           HT+EV+Q++RS+ARAL ++EDL EAIAL+HD GHPPFGH GE VL  L+  +GGF+HN Q
Sbjct: 79  HTLEVAQVSRSIARALGLNEDLTEAIALSHDLGHPPFGHTGEHVLNALMQDHGGFEHNAQ 138

Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLS 196
           + RI+T LE  Y  F G+NLT+E LEG+  H                     Y       
Sbjct: 139 ALRILTHLEVRYPGFRGLNLTYEVLEGIATHEAA------------------YSPGFKPL 180

Query: 197 LANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLD 256
                +LE QV  ++D IAY AHD+DDG RAGLL  + LKE+  L+            L 
Sbjct: 181 YEGQGTLEAQVVDLSDAIAYAAHDLDDGFRAGLLHPEELKEVELLQALALEEGLDLLRLP 240

Query: 257 DKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEI 316
           +      LVR+ +   +   I  + +R+      +   +R    R+              
Sbjct: 241 ELD-RRVLVRQLLGYFITAAIEATHRRVEEAGVQSAEAVRRHPSRLAALGXXXXXXXXXX 299

Query: 317 KSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHV 376
              L++  YRHP ++    +   V+  LF+AY   P  +      E +  + +    R V
Sbjct: 300 XXFLMERFYRHPEVLRERRKAEAVLEGLFAAYTRYPELL----PREVQAKIPEEGLERAV 355

Query: 377 GDYLAGMTDSYAIREHHILF 396
            DY+AGMTD +A+  +  L 
Sbjct: 356 CDYIAGMTDRFALEAYRRLS 375


>2pgs_A Putative deoxyguanosinetriphosphate triphosphohydrolase;
           deoxyguanosinetriphosphate triphsphohydrolase; 2.35A
           {Pseudomonas syringae PV}
          Length = 451

 Score =  275 bits (704), Expect = 1e-74
 Identities = 95/437 (21%), Positives = 150/437 (34%), Gaps = 60/437 (13%)

Query: 22  TQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEV 81
            + LG+       L RS F +D DR+I + AFRRL  KTQV      DH  TRL H++EV
Sbjct: 11  RERLGKTLHSPEELGRSPFHKDHDRIIFSGAFRRLGRKTQVHPVSSNDHIHTRLTHSLEV 70

Query: 82  SQIARSLARALRID--------------EDLVEAIALAHDFGHPPFGHVGEDVLQELLSS 127
           S + RSL   +                   +V++  LAHD G+PPFGH GED ++   + 
Sbjct: 71  SCVGRSLGMRVGETLRAALPDWCDPSDLGMVVQSACLAHDIGNPPFGHSGEDAIRNWFNQ 130

Query: 128 YGG-----------------FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGP 170
             G                 F+ N Q FR++T+LE    D  G  LT+ TL   + +   
Sbjct: 131 AAGRGWLDAMSETERNDFLNFEGNAQGFRVLTQLEYHQFDG-GTRLTYATLGTYLKYPWT 189

Query: 171 ILPQDLDKPRIIPRIFSDYYHIHGLSLANF------------ASLEGQVAAIADDIAYDA 218
               D    +                +A                    +   ADDI Y  
Sbjct: 190 ARHADSLGYKKHKFGCYQSELPILEQIAGKLGLPQLEEQRWARHPLVYLMEAADDICYAL 249

Query: 219 HDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVIT 278
            D++DG+   LL    ++ +  L      L + Y  L         +       +E +  
Sbjct: 250 IDLEDGLEMDLLDYAEVESL-LLGLVGDDLPETYRQLGPGDSRRRKLAILRGKAIEHLTN 308

Query: 279 VSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIA 338
            + +     +  A+      G  +              K M  K +++            
Sbjct: 309 AAARAFVE-QQDALLAGTLPGDLVEHMHGPAKRCVLNAKDMARKKIFQDKRKTLHEIGAY 367

Query: 339 NVIRNLFSAYMSDPRKMRGCNQLEY--------------ERDMTDSIKARHVGDYLAGMT 384
             +  L +A+     +  G     +              +           + D++AGMT
Sbjct: 368 TTLEILLNAFCGAAVEQFGGRTPSFKHRRILDLLGNSAPDPKAPLHASFLRMIDFIAGMT 427

Query: 385 DSYAIREHHILFGYIPD 401
           DSYA      + G   +
Sbjct: 428 DSYASEMAREMTGRSGE 444


>3bg2_A DGTP triphosphohydrolase; structural genomics, NYSGXRC, target
           10395N, PSI-2, protein structure initiative; 1.95A
           {Leeuwenhoekiella blandensis MED217}
          Length = 444

 Score =  256 bits (655), Expect = 6e-69
 Identities = 83/433 (19%), Positives = 152/433 (35%), Gaps = 70/433 (16%)

Query: 26  GRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTIEVSQIA 85
            +    ++  TR  F+ D DR+I +  FR L+DKTQV    + D   TRL H++EVS + 
Sbjct: 17  AKRLRIEQDDTRLGFEVDYDRIIFSAPFRSLQDKTQVIPLSKTDFVHTRLTHSLEVSVVG 76

Query: 86  RSLARAL-------------------RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLS 126
           RSL R +                        +V A ALAHD G+PPFGH GE  + E   
Sbjct: 77  RSLGRMVGKKLLEKYPHLEQVYGYKFNDFGAIVAAAALAHDIGNPPFGHSGEKAIGEFFK 136

Query: 127 SYGG-----------------FDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNG 169
           +  G                 F+ N   F+++++ +       G+ L++ TL   + +  
Sbjct: 137 NGYGKRYKDSLTAKEYQDLIKFEGNANGFKVLSQSKPGA--QGGLRLSYATLGAFMKYPK 194

Query: 170 PILPQ----------------DLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADD 213
             LP                 +      + +            ++        +   ADD
Sbjct: 195 ESLPHKPSDHIADKKYGFFQSERALFEDVAQELGLLKRSTTDDVSWSRHPLAYLVEAADD 254

Query: 214 IAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHDLYGHLDDKR-LVHELVRRQITAM 272
           I Y   D +DG+  GL+  +   E            + Y  L +    V  L    I  +
Sbjct: 255 ICYTIIDFEDGINLGLIPEEYALEYMVKLVGQTIDRNKYNALQETSDRVSYLRALAIGTL 314

Query: 273 VEDVITVSQKRIAHLKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMT 332
           + + +    K    +         +    +ID S+    +  +I ++ ++ +Y    ++ 
Sbjct: 315 INESVDTFMKYEEEILAG------TFDQSLIDKSNYQAQI-TDIINLSIERIYNSREVIE 367

Query: 333 CCNQIANVIRNLFSAYMSDPRKMRGCNQLEYERDM--------TDSIKARHVGDYLAGMT 384
                  ++  L  A                ++ +        +       +   ++ MT
Sbjct: 368 KEIAGYEILSTLLEARCRALDNNDTHYNQLIQQLLAPNDHSEKSLYENLIQICAEVSTMT 427

Query: 385 DSYAIREHHILFG 397
           D  A+R +  + G
Sbjct: 428 DGKALRNYKKIKG 440


>2hek_A Hypothetical protein; predominantly alpha helical protein with GDP
           binding site and active site being FAR from EACH other,
           structural genomics; HET: GDP; 2.00A {Aquifex aeolicus}
           SCOP: a.211.1.1
          Length = 371

 Score = 86.9 bits (214), Expect = 7e-18
 Identities = 37/158 (23%), Positives = 60/158 (37%), Gaps = 3/158 (1%)

Query: 39  EFQRDRDRMIHTTAFRRLKDKTQVFFHRQ--RDHYRTRLMHTIEVSQIARSLARALRIDE 96
                  R+I +  F+RL+   Q+            TR  H++ V  I   +  +L++ E
Sbjct: 14  RVGEAGLRLIDSFPFQRLRYVKQLGLAYLVFPSAQHTRFEHSLGVYHITERICESLKVKE 73

Query: 97  -DLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGIN 155
            +LV+   L HD GHPPF H  E +L    S     +  I+   I   L+  Y+  D   
Sbjct: 74  KELVKLAGLLHDLGHPPFSHTTEVLLPRERSHEDFTERVIKETEIYEILKQDYSHEDIER 133

Query: 156 LTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIH 193
           L   TL         +L + +       R+       +
Sbjct: 134 LVRITLGKPEDEEEKLLSEIITGEFGSDRMDYLRRDAY 171


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 77.3 bits (190), Expect = 5e-15
 Identities = 83/556 (14%), Positives = 153/556 (27%), Gaps = 229/556 (41%)

Query: 2   IVVRKLGFGHQKKVA-YAADPTQSLGRMYPE--KRSLTRSEFQRD--RDRMIHTTAFRRL 56
           +V + LG+     V+             + +     LT  EF+        IH  A + L
Sbjct: 60  LVGKFLGY-----VSSLVEPSKVGQ---FDQVLNLCLT--EFENCYLEGNDIHALAAKLL 109

Query: 57  KDKTQVFFHRQ---RDHYRTRLMHTIEVSQIARS-LARALRIDEDLVEAIALAHDFGHPP 112
           ++        +   +++   R+M      + + S L RA+      + AI     FG   
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI-----FGGQ- 163

Query: 113 FGHVGE--DVLQELLSSYGGFDHNIQSF-RIVTEL--ECSYADFD-------GIN-LTWE 159
            G+  +  + L++L  +Y      +    +   E   E      D       G+N L W 
Sbjct: 164 -GNTDDYFEELRDLYQTYHVL---VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEW- 218

Query: 160 TLEGLIGHNGPILPQDLDKPRIIPRIFSDY-------YHIHGL-SLANFA---------- 201
                           L+ P   P    DY         + G+  LA++           
Sbjct: 219 ----------------LENPSNTPD--KDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP 260

Query: 202 -----SLEG-----Q---VA---AIADD-----------------IAYDAHD-------- 220
                 L+G     Q    A   A  D                  I    ++        
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP 320

Query: 221 ---IDDGVRAG------LLTVDMLKEISFLEKHIASLHDLYGHL-DDKRLVHELV--RRQ 268
              ++D +         +L++  L     ++ ++   +    HL   K++   LV   + 
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNL-TQEQVQDYVNKTN---SHLPAGKQVEISLVNGAKN 376

Query: 269 ITAMVEDVIT---------------------VSQKRIAH--LKP-------------HAI 292
           +      V++                     + Q RI     K              H+ 
Sbjct: 377 L------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSH 430

Query: 293 HDIRSAGYRII-DFSDEMTLVDKEIK-SMLVKYVY--------RHPSIMTCCNQIANVIR 342
             +  A   I  D        +       +   VY        R  S         ++  
Sbjct: 431 L-LVPASDLINKDLVKN----NVSFNAKDIQIPVYDTFDGSDLRVLS--------GSISE 477

Query: 343 NLFSAYMSDPRKMRGCNQLEYERDMTDSIKARHVGDY-------LAGMT----DSYAIRE 391
            +    +  P          +E   T   KA H+ D+       L  +T    D   +R 
Sbjct: 478 RIVDCIIRLP-----VK---WET--TTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRV 527

Query: 392 HHILFGYIPDFAVDYS 407
             I+ G      +D +
Sbjct: 528 --IVAG-----TLDIN 536



 Score = 57.3 bits (138), Expect = 6e-09
 Identities = 50/321 (15%), Positives = 97/321 (30%), Gaps = 108/321 (33%)

Query: 60  TQVFFH--RQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVG 117
           T  FF   + ++ +   L       +     A     D++      L   F     G+V 
Sbjct: 24  TASFFIASQLQEQFNKIL------PEPTEGFAA----DDEPTTPAELVGKF----LGYV- 68

Query: 118 EDVLQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLD 177
             +++   S  G FD  +     +TE E  Y + + I+        L       L Q+ D
Sbjct: 69  SSLVEP--SKVGQFDQVLNL--CLTEFENCYLEGNDIH-------ALAAK----LLQEND 113

Query: 178 KPRIIP---RIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTV-- 232
               +     +  +Y       +A     +   +A+   +        +G  A L+ +  
Sbjct: 114 TT--LVKTKELIKNYIT--ARIMAKRPFDKKSNSALFRAVG-------EG-NAQLVAIFG 161

Query: 233 ------DMLKEISFLEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAH 286
                 D  +E+         L+  Y  L                 V D+I  S + ++ 
Sbjct: 162 GQGNTDDYFEEL-------RDLYQTYHVL-----------------VGDLIKFSAETLSE 197

Query: 287 L--KPHAIHDIRSAGYRIIDF-SDEMTLVDKE------IKSM-------LVKYVYRHPSI 330
           L         + + G  I+++  +     DK+      I S        L  YV      
Sbjct: 198 LIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIGVIQLAHYV------ 250

Query: 331 MTCCNQIANV----IRNLFSA 347
           +T   ++       +R+    
Sbjct: 251 VTA--KLLGFTPGELRSYLKG 269



 Score = 28.4 bits (63), Expect = 3.3
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 30/121 (24%)

Query: 31   EKRSLTRSEFQRDRDRMIHTTAFRRLKDKTQVFFHRQRDHYRTRLMHTI-EVSQIARSLA 89
            EK  L+ ++F +    ++   AF  LK K  +      D   T   H++ E + +A SLA
Sbjct: 1722 EKGLLSATQFTQPALTLMEKAAFEDLKSKGLI----PAD--ATFAGHSLGEYAALA-SLA 1774

Query: 90   RALRIDEDLVEA---------IALAHD-FGHPPFGHVG-----------EDVLQELLSSY 128
              + I E LVE          +A+  D  G   +G +            ++ LQ ++   
Sbjct: 1775 DVMSI-ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERV 1833

Query: 129  G 129
            G
Sbjct: 1834 G 1834


>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint
           center for structural genomics, JCSG; HET: MSE ADP;
           2.20A {Bacteroides thetaiotaomicron vpi-5482}
          Length = 410

 Score = 59.7 bits (144), Expect = 1e-09
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 46  RMIHTTAFRRLKDKTQV----FFHRQRDHYRTRLMHTIEVSQIARSLARALR-------- 93
            ++     +RL    QV      +    H  TR  H++    +       L         
Sbjct: 26  DIVRHPLLQRLTRIKQVGLSSVVYPGAQH--TRFQHSLGAFYLMSEAITQLTSKGNFIFD 83

Query: 94  IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELE 145
            + + V+A  L HD GH PF HV ED + +      G  H   S  ++  + 
Sbjct: 84  SEAEAVQAAILLHDIGHGPFSHVLEDTIVQ------GVSHEEISLMLMERMN 129


>3irh_A HD domain protein; phosphohydrolase, dntpase, structural genomics,
           PSI-2, protein structure initiative; HET: DGT DTP; 2.40A
           {Enterococcus faecalis V583} PDB: 2o6i_A*
          Length = 480

 Score = 47.1 bits (111), Expect = 8e-06
 Identities = 28/162 (17%), Positives = 54/162 (33%), Gaps = 30/162 (18%)

Query: 46  RMIHTTAFRRLKDKTQV----FFHRQRDHYRTRLMHTIEVSQIARSLARALRI------- 94
            +I++   +RL+   Q+    F     +H  +R  H++ V +I R +    +        
Sbjct: 57  DLINSAEVQRLRRIKQLGTSSFTFHGAEH--SRFSHSLGVYEITRRICEIFQRNYSVERL 114

Query: 95  --------DEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRIVTELEC 146
                   +  +    AL HD GH P+ H                +H   + +I+T  E 
Sbjct: 115 GENGWNDDERLITLCAALLHDVGHGPYSHT--------FEHIFDTNHEAITVQIITSPET 166

Query: 147 SYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSD 188
                    ++ +  E +        P       I  +I +D
Sbjct: 167 EVYQILN-RVSADFPEKVASVITKQYPNPQVVQMISSQIDAD 207


>3dto_A BH2835 protein; all alpha-helical protein, structural genomics,
           PSI-2, protein structure initiative; 3.30A {Bacillus
           halodurans} SCOP: a.211.1.1
          Length = 223

 Score = 42.4 bits (99), Expect = 2e-04
 Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
           H   V+ +A+++    ++D  +V+  AL HD          E   Q+L+          Q
Sbjct: 29  HIRRVTLMAKAIGEQEKVDVFVVQIAALFHDLIDDKLVDDPETAKQQLIDWMEAAGVPSQ 88

Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHG 194
                 ++  + +   G   +  T E ++        QD D+   +  I       + 
Sbjct: 89  KIDHTMDIINTISFKGGHGQSLATREAMV-------VQDADRLDALGAIGIARTFAYS 139


>2o08_A BH1327 protein; NP_242193.1, hypothetical protein, structural
           genomics, joint center for structural genomics, JCSG,
           PSI-2; HET: UNL PG4 DGI; 1.90A {Bacillus halodurans}
          Length = 188

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 74  RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGH 110
           R  HTI V + A  LA+    D+   E  A+ HD+  
Sbjct: 19  RYQHTIGVMETAIDLAKLYGADQQKAELAAIFHDYAK 55


>3ccg_A HD superfamily hydrolase; NP_347894.1, HD domain, structural
           genomics, joint center for structural genomics, JCSG;
           HET: MSE; 1.50A {Clostridium acetobutylicum atcc 824}
          Length = 190

 Score = 38.2 bits (88), Expect = 0.003
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 74  RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGH 110
           R  H++ V   A  LA     D +      L HD   
Sbjct: 20  RYKHSLGVMDTAVRLAGIYNEDTEKARIAGLVHDCAK 56


>2ogi_A Hypothetical protein SAG1661; NP_688652.1, conserved hypothetical
           protein TIGR00488, structural genomics; HET: GDP MES;
           1.85A {Streptococcus agalactiae serogroup V}
          Length = 196

 Score = 37.4 bits (86), Expect = 0.006
 Identities = 11/36 (30%), Positives = 16/36 (44%)

Query: 74  RLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFG 109
           R  H + V + A  LA     D++     AL HD+ 
Sbjct: 27  RFNHVLGVERAAIELAERYGYDKEKAGLAALLHDYA 62


>2pq7_A Predicted HD superfamily hydrolase; 104161995, HD domain,
           structural genomics, joint center for structural
           genomics, JCSG; HET: MSE; 1.45A {Uncultured
           thermotogales bacterium} SCOP: a.211.1.1
          Length = 220

 Score = 36.3 bits (83), Expect = 0.012
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED 119
           HT  V + A  +A   + D       AL HD   P     G D
Sbjct: 37  HTFRVMENASEIASREKCDLQKAIIAALLHDIKRPHEALTGVD 79


>3b57_A LIN1889 protein; Q92AN1, X-RAY, NESG, structural genomics, PSI-2,
           protein structure initiative; 3.00A {Listeria innocua
           CLIP11262} SCOP: a.211.1.1
          Length = 209

 Score = 36.2 bits (83), Expect = 0.013
 Identities = 17/107 (15%), Positives = 33/107 (30%), Gaps = 6/107 (5%)

Query: 59  KTQVFFHRQRDHYRTR--LMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFG-- 114
             + + H   ++  T     H   V ++++ +      D   +E  AL HD+        
Sbjct: 9   SAKNWMHSHFENETTGHDWSHIKRVWKLSKEIQSKEGGDLFTIELAALFHDYSDIKLTTD 68

Query: 115 -HVGEDVLQELLSSYGGFDHNIQSF-RIVTELECSYADFDGINLTWE 159
                  L   + +       I+   RI+  +           LT E
Sbjct: 69  EQEATKTLINWMETKEIPSELIKKIIRIIQSVSFKKGKNTFKALTIE 115


>3djb_A Hydrolase, HD family; all alpha-helical protein., structural
           genomics, PSI-2, protein structure initiative; 2.90A
           {Bacillus thuringiensis serovarkonkukian} SCOP:
           a.211.1.1
          Length = 223

 Score = 35.4 bits (81), Expect = 0.024
 Identities = 17/96 (17%), Positives = 36/96 (37%)

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
           H   V ++A SL+     +  ++E  AL HD          E  ++++           +
Sbjct: 29  HIRRVHKMAISLSEQEGGNRFIIEMAALLHDVADEKLNESEEAGMKKVSDWLEELHVEEE 88

Query: 137 SFRIVTELECSYADFDGINLTWETLEGLIGHNGPIL 172
             + V  +  + +   G     E++EG +  +   L
Sbjct: 89  ESKHVLHIIANMSYKGGHGGKVESIEGKLVQDADRL 124


>3cpg_A Uncharacterized protein; unknown protein, TIM barrel, monomer,
           structural genomics, PSI-2, protein structure
           initiative; 1.71A {Bifidobacterium adolescentis
           ATCC15703}
          Length = 282

 Score = 32.0 bits (72), Expect = 0.28
 Identities = 29/232 (12%), Positives = 67/232 (28%), Gaps = 34/232 (14%)

Query: 82  SQIARSLARALRIDEDL----------VEAIALAHDFGHPPFGHVGEDVLQELLSSYGGF 131
            +IA +  +A R    +          +  I  A D G       GE+  QE+ +   G 
Sbjct: 34  DRIAAAEEQAGREAGSVRLLAATKTRDIGEIMAAIDAGVRMI---GENRPQEVTAKAEGL 90

Query: 132 DHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYH 191
                       +  +  D    ++ +            I     +K   +  +      
Sbjct: 91  ARRCAERGFSLGVAGAAPDAAAEHIPF----------HLIGQLQSNKIGKVLPVVDTIES 140

Query: 192 IHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEK----HIAS 247
           +  + LA   S       I   +  + ++  +  ++G      ++    +       +  
Sbjct: 141 VDSIDLAEKISRRAVARGITVGVLLEVNESGEESKSGCDPAHAIRIAQKIGTLDGIELQG 200

Query: 248 LHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAG 299
           L  +  H+ D+     ++RR  + + +   T      +           S G
Sbjct: 201 LMTIGAHVHDE----TVIRRGFSHLRK---TRDLILASGEPGTDRCRELSMG 245


>3gw7_A Uncharacterized protein YEDJ; all alpha-helical protein, structural
           genomics, PSI-2, protein structure initiative; 3.30A
           {Escherichia coli k-12}
          Length = 239

 Score = 31.2 bits (70), Expect = 0.39
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGED 119
           H   V   A+ LA    +D  ++      HD       H    
Sbjct: 29  HFRRVWATAQKLAADDDVDMLVILTACYFHDIVSLAKNHPQRQ 71


>3ljx_A MMOQ response regulator; structural genomics, PSI-2, protein
           structure initiative, northeast structural genomics
           consortium, NESG; 2.30A {Methylococcus capsulatus}
          Length = 288

 Score = 30.9 bits (69), Expect = 0.56
 Identities = 11/115 (9%), Positives = 25/115 (21%), Gaps = 3/115 (2%)

Query: 70  HYRTRLMHTIEVSQIARSLARALR-IDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSY 128
            Y      ++  +   +S+      +       + L  D G         +   E L   
Sbjct: 105 DYAAYWQKSLARAVALQSITAQASTVAPKEAFTLGLLADVGRLALATAWPEEYSECLRKA 164

Query: 129 GGFDHN--IQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPRI 181
            G       +        E +             ++ L       +  +    R 
Sbjct: 165 DGEALIALERERFATDHDELTRMLLTDWGFPQVFIDALQLSQQDEIRDEGRTGRF 219


>2pjq_A Uncharacterized protein LP_2664; LPR71, NESG, structural genomics,
           PSI-2, protein structure initiative; 2.80A
           {Lactobacillus plantarum WCFS1} SCOP: a.211.1.1
          Length = 231

 Score = 30.4 bits (68), Expect = 0.79
 Identities = 13/50 (26%), Positives = 21/50 (42%)

Query: 77  HTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLS 126
           H   V+++AR LA+    + +L  A A  HD              Q+L+ 
Sbjct: 34  HLQRVNRLARRLAKDEGANLNLTLAAAWLHDVIDDKLMANPAKAHQDLIV 83


>3byv_A Rhoptry kinase; malaria, transferase, structural genomics,
           structural genomics consortium, SGC; 1.80A {Toxoplasma
           gondii} PDB: 2w1z_A
          Length = 377

 Score = 29.4 bits (65), Expect = 1.6
 Identities = 18/123 (14%), Positives = 38/123 (30%), Gaps = 7/123 (5%)

Query: 191 HIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISFLEKHIASLHD 250
            + G+     A +  +     D +          VR     + +L       +  ++L  
Sbjct: 129 LLRGIKNQKQAKVHLRFIFPFDLVKDPQKKKMIRVRLDERDMWVLSRFFLYPRMQSNLQT 188

Query: 251 LYGHLDDKRLVH----ELVRRQITA-MVEDVITVSQKRIAH--LKPHAIHDIRSAGYRII 303
               L      H       R Q+T  ++  + ++    + H  L+P  I   +  G  + 
Sbjct: 189 FGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHYGLVHTYLRPVDIVLDQRGGVFLT 248

Query: 304 DFS 306
            F 
Sbjct: 249 GFE 251


>3mt5_A Potassium large conductance calcium-activated CHA subfamily M,
           alpha member 1; potassium channel, membrane protein,
           transport protein; 3.00A {Homo sapiens}
          Length = 726

 Score = 29.2 bits (64), Expect = 1.8
 Identities = 11/113 (9%), Positives = 34/113 (30%), Gaps = 9/113 (7%)

Query: 287 LKPHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFS 346
           L+ H    + +         D+   + +     + +              ++ ++ NLFS
Sbjct: 122 LQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIAQSC--------LAQGLSTMLANLFS 173

Query: 347 AYMSDPRKMRGCNQLEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYI 399
              S  +      Q  Y   +++ +   ++     G++         +    +
Sbjct: 174 -MRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPTVCELCFVKLKLL 225


>1p1j_A Inositol-3-phosphate synthase; 1L-MYO-inositol 1-phosphate, NADH,
           isomerase, rossmann fold; HET: NAI; 1.70A {Saccharomyces
           cerevisiae} SCOP: c.2.1.3 d.81.1.3 PDB: 1jkf_A* 1la2_A*
           1p1f_A 1jki_A* 1p1i_A* 1p1h_A* 1p1k_A* 1rm0_A*
          Length = 533

 Score = 28.3 bits (63), Expect = 3.4
 Identities = 14/91 (15%), Positives = 30/91 (32%), Gaps = 14/91 (15%)

Query: 155 NLTWETLEGLIGHNGPILPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEGQVAAIADDI 214
           N+ ++T EG+   N           ++      +  +    SL    S         +D 
Sbjct: 91  NVEFQTKEGVKQPNYFGSMTQCSTLKLGIDAEGNDVYAPFNSLLPMVSP--------NDF 142

Query: 215 AYDAHDIDDG------VRAGLLTVDMLKEIS 239
                DI++        R+ +L  D+ + + 
Sbjct: 143 VVSGWDINNADLYEAMQRSQVLEYDLQQRLK 173


>1f0j_A PDE4B, phosphodiesterase 4B; PDE phosphodiesterase, hydrolase;
           1.77A {Homo sapiens} SCOP: a.211.1.2 PDB: 1ro6_A*
           1ro9_A* 1ror_A* 1tb5_A* 1xm6_A* 1xlx_A* 1xm4_A* 1xlz_A*
           1xmu_A* 1xmy_A* 1xn0_A* 1xos_A* 1xot_B* 1y2h_A* 1y2j_A*
           3kkt_A* 3g4i_A* 3g4k_A* 3g4l_A* 3g58_A* ...
          Length = 377

 Score = 28.0 bits (62), Expect = 3.6
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 12/63 (19%)

Query: 63  FFHRQRDHYRTRL-----MHTIEVSQIARSLARALRIDEDL--VEAI-----ALAHDFGH 110
           +     DHY + +     +H  +V+Q    L     +D     +E +     A  HD  H
Sbjct: 68  YMMTLEDHYHSDVAYHNSLHAADVAQSTHVLLSTPALDAVFTDLEILAAIFAAAIHDVDH 127

Query: 111 PPF 113
           P  
Sbjct: 128 PGV 130


>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold,
           oxidoreductase; 2.20A {Caenorhabditis elegans}
          Length = 460

 Score = 28.1 bits (62), Expect = 4.0
 Identities = 4/23 (17%), Positives = 7/23 (30%)

Query: 207 VAAIADDIAYDAHDIDDGVRAGL 229
              I + +  +   ID     G 
Sbjct: 371 YRCIEEGVISNESLIDIMFILGF 393


>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
           c.1.8.5 d.26.3.1
          Length = 435

 Score = 28.0 bits (61), Expect = 4.5
 Identities = 18/93 (19%), Positives = 29/93 (31%), Gaps = 2/93 (2%)

Query: 131 FDHNIQSFRIVTELECSYADFDGINLTWE--TLEGLIGHNGPILPQDLDKPRIIPRIFSD 188
              N+ +F        +   FDGI++ WE       +  NG     D    + +   F  
Sbjct: 155 IKGNLPNFEGRGGAGAAAGIFDGIDIDWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRK 214

Query: 189 YYHIHGLSLANFASLEGQVAAIADDIAYDAHDI 221
               +G +      L   + A   DI     D 
Sbjct: 215 QLDAYGSTNNKKYVLSAFLPANPADIDAGGWDD 247


>1vko_A Inositol-3-phosphate synthase; CE21227, structural genomics, JCSG,
           protein structure initiative, PSI; HET: NAD; 2.30A
           {Caenorhabditis elegans} SCOP: c.2.1.3 d.81.1.3
          Length = 537

 Score = 27.9 bits (62), Expect = 4.6
 Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 31/100 (31%)

Query: 155 NLTWETLEGLIGHN--GPI-------LPQDLDKPRIIPRIFSDYYHIHGLSLANFASLEG 205
            +TW T EG    N  G +       L  D      I   F D      + + +      
Sbjct: 102 AMTWRTKEGHSQANYFGSVTQTATVHLGYDSATQNQIFVPFKDI-----VPILSP----- 151

Query: 206 QVAAIADDIAYDAHDIDDG------VRAGLLTVDMLKEIS 239
                 +D+     DI D        RA +   ++ +++ 
Sbjct: 152 ------NDLIISGWDISDSNLYEAMGRAKVFEPELQEKLR 185


>3g4g_A DPDE3, PDE43, CAMP-specific 3',5'-cyclic phosphodiesterase 4D;
           PDE4D, UCR2, alternative splicing, cytoplasm,
           cytoskeleton, hydrolase, membrane; HET: D71; 2.30A {Homo
           sapiens} PDB: 3g45_A*
          Length = 421

 Score = 27.3 bits (60), Expect = 6.8
 Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 12/63 (19%)

Query: 63  FFHRQRDHYRTRL-----MHTIEVSQIARSLARALRIDEDL--VEAI-----ALAHDFGH 110
           +     DHY   +     +H  +V Q    L     ++     +E +     +  HD  H
Sbjct: 147 YLMTLEDHYHADVAYHNNIHAADVVQSTHVLLSTPALEAVFTDLEILAAIFASAIHDVDH 206

Query: 111 PPF 113
           P  
Sbjct: 207 PGV 209


>3m1t_A Putative phosphohydrolase; structural genomics, joint center for
           structural genomics, JCSG, protein structure initiative,
           PSI-2; HET: MSE GOL; 1.62A {Shewanella amazonensis}
          Length = 275

 Score = 27.1 bits (59), Expect = 7.0
 Identities = 10/68 (14%), Positives = 21/68 (30%)

Query: 61  QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120
                 +         +T EV+ I + LA+ L    +      + H  G     +    V
Sbjct: 93  GAVPKVEGFDLADFWGNTFEVAIICQELAKRLGTLPEEAFTCGILHSIGELLIVNGDPAV 152

Query: 121 LQELLSSY 128
              + ++ 
Sbjct: 153 AATISAAV 160


>2a2f_X Exocyst complex component SEC15; all helical structure, protein
           transport; 2.50A {Drosophila melanogaster}
          Length = 325

 Score = 27.1 bits (60), Expect = 8.3
 Identities = 10/38 (26%), Positives = 18/38 (47%)

Query: 289 PHAIHDIRSAGYRIIDFSDEMTLVDKEIKSMLVKYVYR 326
           P   H  +   Y  + F++E+TL   E+ +M+ K    
Sbjct: 78  PEVYHQAKEFMYACMKFAEELTLSPNEVAAMVRKAANL 115


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.325    0.140    0.415 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,751,118
Number of extensions: 183854
Number of successful extensions: 736
Number of sequences better than 10.0: 1
Number of HSP's gapped: 705
Number of HSP's successfully gapped: 47
Length of query: 410
Length of database: 5,693,230
Length adjustment: 95
Effective length of query: 315
Effective length of database: 3,390,050
Effective search space: 1067865750
Effective search space used: 1067865750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.8 bits)