BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] (410 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus str. psy62] Length = 410 Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust. Identities = 410/410 (100%), Positives = 410/410 (100%) Query: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT Sbjct: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60 Query: 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV Sbjct: 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120 Query: 121 LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR 180 LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR Sbjct: 121 LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR 180 Query: 181 IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF 240 IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF Sbjct: 181 IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF 240 Query: 241 LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY 300 LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY Sbjct: 241 LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY 300 Query: 301 RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ 360 RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ Sbjct: 301 RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ 360 Query: 361 LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH 410 LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH Sbjct: 361 LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH 410 >gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62] Length = 129 Score = 28.5 bits (62), Expect = 0.19, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 13/61 (21%) Query: 25 LGR--MYPEKRSLTRSEFQR-----DRDRMIHTTAFRRLKDKTQV------FFHRQRDHY 71 +GR + PE+R L R E++R +RD+++ R LK+K ++ ++ + +D Y Sbjct: 1 MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY 60 Query: 72 R 72 R Sbjct: 61 R 61 >gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str. psy62] Length = 920 Score = 28.1 bits (61), Expect = 0.27, Method: Compositional matrix adjust. Identities = 12/29 (41%), Positives = 18/29 (62%) Query: 136 QSFRIVTELECSYADFDGINLTWETLEGL 164 QSF I+ E+ A DG+++ W T+E L Sbjct: 730 QSFVILDEIGRGTATLDGLSIAWATIEYL 758 >gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter asiaticus str. psy62] Length = 388 Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%) Query: 122 QELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI--GHNGPILPQDLDKP 179 QELL+S G + + + ELE Y + + WE L+ LI G P++ P Sbjct: 313 QELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI-----AP 367 Query: 180 RIIP 183 R IP Sbjct: 368 RDIP 371 >gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus Liberibacter asiaticus str. psy62] Length = 424 Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust. Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%) Query: 84 IARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136 +A++LAR + + + +A L G+VGEDV +L D+N++ Sbjct: 129 LAQTLARIIDVPFTMADATTLTE------AGYVGEDVENIILKLLQAADYNVE 175 >gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62] Length = 648 Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust. Identities = 14/48 (29%), Positives = 22/48 (45%) Query: 93 RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI 140 +I DL+ I +A DF H + + L L G H I+ F++ Sbjct: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.325 0.140 0.415 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 265,422 Number of Sequences: 1233 Number of extensions: 11028 Number of successful extensions: 44 Number of sequences better than 100.0: 11 Number of HSP's better than 100.0 without gapping: 3 Number of HSP's successfully gapped in prelim test: 8 Number of HSP's that attempted gapping in prelim test: 41 Number of HSP's gapped (non-prelim): 12 length of query: 410 length of database: 328,796 effective HSP length: 76 effective length of query: 334 effective length of database: 235,088 effective search space: 78519392 effective search space used: 78519392 T: 11 A: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 39 (19.6 bits)