BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate
triphosphohydrolase-like protein [Candidatus Liberibacter asiaticus
str. psy62]
(410 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780286|ref|YP_003064699.1| deoxyguanosinetriphosphate triphosphohydrolase-like protein
[Candidatus Liberibacter asiaticus str. psy62]
Length = 410
Score = 843 bits (2179), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/410 (100%), Positives = 410/410 (100%)
Query: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60
MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT
Sbjct: 1 MIVVRKLGFGHQKKVAYAADPTQSLGRMYPEKRSLTRSEFQRDRDRMIHTTAFRRLKDKT 60
Query: 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120
QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV
Sbjct: 61 QVFFHRQRDHYRTRLMHTIEVSQIARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDV 120
Query: 121 LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR 180
LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR
Sbjct: 121 LQELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLIGHNGPILPQDLDKPR 180
Query: 181 IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF 240
IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF
Sbjct: 181 IIPRIFSDYYHIHGLSLANFASLEGQVAAIADDIAYDAHDIDDGVRAGLLTVDMLKEISF 240
Query: 241 LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY 300
LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY
Sbjct: 241 LEKHIASLHDLYGHLDDKRLVHELVRRQITAMVEDVITVSQKRIAHLKPHAIHDIRSAGY 300
Query: 301 RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ 360
RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ
Sbjct: 301 RIIDFSDEMTLVDKEIKSMLVKYVYRHPSIMTCCNQIANVIRNLFSAYMSDPRKMRGCNQ 360
Query: 361 LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH 410
LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH
Sbjct: 361 LEYERDMTDSIKARHVGDYLAGMTDSYAIREHHILFGYIPDFAVDYSEFH 410
>gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 129
Score = 28.5 bits (62), Expect = 0.19, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 13/61 (21%)
Query: 25 LGR--MYPEKRSLTRSEFQR-----DRDRMIHTTAFRRLKDKTQV------FFHRQRDHY 71
+GR + PE+R L R E++R +RD+++ R LK+K ++ ++ + +D Y
Sbjct: 1 MGRKVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKY 60
Query: 72 R 72
R
Sbjct: 61 R 61
>gi|254780750|ref|YP_003065163.1| DNA mismatch repair protein [Candidatus Liberibacter asiaticus str.
psy62]
Length = 920
Score = 28.1 bits (61), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 136 QSFRIVTELECSYADFDGINLTWETLEGL 164
QSF I+ E+ A DG+++ W T+E L
Sbjct: 730 QSFVILDEIGRGTATLDGLSIAWATIEYL 758
>gi|254780124|ref|YP_003064537.1| hypothetical protein CLIBASIA_00015 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 388
Score = 25.0 bits (53), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 122 QELLSSYGGFDHNIQSFRIVTELECSYADFDGINLTWETLEGLI--GHNGPILPQDLDKP 179
QELL+S G + + + ELE Y + + WE L+ LI G P++ P
Sbjct: 313 QELLTSVLGEEAFKRILKTPKELEQLYKEQKVSDEFWEELQELITRGDGKPVI-----AP 367
Query: 180 RIIP 183
R IP
Sbjct: 368 RDIP 371
>gi|254780271|ref|YP_003064684.1| ATP-dependent protease ATP-binding subunit ClpX [Candidatus
Liberibacter asiaticus str. psy62]
Length = 424
Score = 24.6 bits (52), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 84 IARSLARALRIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQ 136
+A++LAR + + + +A L G+VGEDV +L D+N++
Sbjct: 129 LAQTLARIIDVPFTMADATTLTE------AGYVGEDVENIILKLLQAADYNVE 175
>gi|254780834|ref|YP_003065247.1| DNA primase [Candidatus Liberibacter asiaticus str. psy62]
Length = 648
Score = 23.5 bits (49), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 22/48 (45%)
Query: 93 RIDEDLVEAIALAHDFGHPPFGHVGEDVLQELLSSYGGFDHNIQSFRI 140
+I DL+ I +A DF H + + L L G H I+ F++
Sbjct: 112 KIQTDLIRLIEVATDFFHHSLKNARDKRLHYYLDERGIDSHAIEMFKL 159
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.325 0.140 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,422
Number of Sequences: 1233
Number of extensions: 11028
Number of successful extensions: 44
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 41
Number of HSP's gapped (non-prelim): 12
length of query: 410
length of database: 328,796
effective HSP length: 76
effective length of query: 334
effective length of database: 235,088
effective search space: 78519392
effective search space used: 78519392
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 39 (19.6 bits)