HHsearch alignment for GI: 254780287 and conserved domain: COG4841

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=98.01  E-value=1.3e-05  Score=54.16  Aligned_cols=87  Identities=29%  Similarity=0.422  Sum_probs=66.5

Q ss_pred             CEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCC----CEEEEEHHHHCCCCCCCEECCCCEEEEECHHHHHHCCC--C
Q ss_conf             03318899999999997289884799998368876----51465333210352113004687899984677654068--7
Q gi|254780287|r    4 IIKITDAAATQIKTILESNSDKKALRITIEGGGCS----GFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTN--S   77 (109)
Q Consensus         4 mi~iT~~A~~~i~~l~~~~~~~~~lRi~v~~gGCs----G~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g--~   77 (109)
T Consensus         2 ni~vtd~A~~wfk~E~~l-~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~d~   79 (95)
T COG4841           2 NIEVTDQALKWFKEELDL-EEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDHDL   79 (95)
T ss_pred             CEEECHHHHHHHHHHCCC-CCCCEEEEEEEECCCCCCCCCCCEEEECC-CCHHHCHHEEECCEEEEEECCCEEEECCCCE
T ss_conf             458707988888874387-78987899999767112368723134212-8323152204457089994572688728867


Q ss_pred             EEEEEECCCCCEEEE
Q ss_conf             999872785452389
Q gi|254780287|r   78 EIDFVDNLLSKSFQI   92 (109)
Q Consensus        78 ~IDy~~~~~g~gF~i   92 (109)
T Consensus        80 ~v~y~~~~Dei~fs~   94 (95)
T COG4841          80 KVDYSPDTDEISFSY   94 (95)
T ss_pred             EEECCCCCCCCEEEC
T ss_conf             996167877504631