Query gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 109
No_of_seqs 119 out of 3041
Neff 7.2
Searched_HMMs 33803
Date Tue May 24 14:39:30 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780287.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >2d2a_A SUFA protein; iron-sul 100.0 2.7E-36 8.1E-41 232.9 11.2 108 2-109 38-145 (145)
2 >2apn_A Protein HI1723; HI1723 100.0 3E-35 8.8E-40 226.9 7.7 109 1-109 5-114 (114)
3 >1x0g_A ISCA; [2Fe-2S], biosyn 100.0 2.7E-35 8.1E-40 227.1 5.9 106 4-109 1-109 (112)
4 >2qgo_A Putative Fe-S biosynth 99.7 1.2E-19 3.4E-24 135.8 0.3 102 3-108 4-123 (141)
5 >1r94_A Protein YFHF; tetramer 99.5 1.2E-14 3.4E-19 106.6 3.4 42 68-109 19-60 (71)
6 >1nwb_A Hypothetical protein A 99.4 1.2E-13 3.5E-18 100.7 2.7 37 73-109 27-63 (72)
7 >1nwb_A Hypothetical protein A 99.4 1.4E-13 4.2E-18 100.2 2.6 52 24-75 1-52 (52)
8 >2p2e_A Putative Fe-S biosynth 99.3 1E-12 3E-17 95.2 5.4 90 3-94 3-104 (128)
9 >1r94_A Protein YFHF; tetramer 99.3 3.4E-12 1E-16 92.2 4.7 47 25-71 1-47 (47)
10 >2k4z_A DSRR; ISCA/SUFA/HESB l 94.5 0.026 7.6E-07 34.4 2.8 27 72-98 42-69 (77)
11 >2k4z_A DSRR; ISCA/SUFA/HESB l 93.2 0.11 3.2E-06 30.8 3.9 46 24-70 2-47 (48)
12 >1vs6_Z 50S ribosomal protein 52.4 5.8 0.00017 20.7 1.2 12 97-108 12-23 (28)
13 >2csh_A Zinc finger protein 29 39.4 9.4 0.00028 19.5 0.6 13 96-108 8-20 (34)
14 >2d0b_A RNAse HIII, ribonuclea 25.2 54 0.0016 15.0 3.4 35 4-38 5-42 (82)
15 >1anp_A Atrial natriuretic pep 22.2 23 0.00067 17.2 0.1 14 29-42 14-28 (28)
16 >1tf6_A Protein (transcription 21.7 37 0.0011 16.0 1.1 10 99-108 13-25 (40)
17 >3a43_A HYPD, hydrogenase nick 20.3 26 0.00077 16.9 0.1 17 7-23 6-22 (139)
No 1
>>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} (A:)
Probab=100.00 E-value=2.7e-36 Score=232.93 Aligned_cols=108 Identities=32% Similarity=0.720 Sum_probs=105.4
Q ss_pred CCCEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHHHHHCCCCEEEE
Q ss_conf 84033188999999999972898847999983688765146533321035211300468789998467765406879998
Q gi|254780287|r 2 VPIIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEIDF 81 (109)
Q Consensus 2 ~~mi~iT~~A~~~i~~l~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~IDy 81 (109)
.+||+||++|+++|+++++++++..+|||.|+++||+|++|.|.|+++++++|++++.+|++|+||+.++.||+|++|||
T Consensus 38 ~~~i~iT~~A~~~l~~ll~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~G~~v~id~~~~~~L~g~~IDy 117 (145)
T 2d2a_A 38 WQGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF 117 (145)
T ss_dssp CCCCEECHHHHHHHHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred CCCEEECHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCEEECCCCCEEEEECCCCEEEECHHHHHHCCCCEEEE
T ss_conf 87679999999999999973999846999996687478764232200124403799737945886488882479979987
Q ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 7278545238988888887788622469
Q gi|254780287|r 82 VDNLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 82 ~~~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
+++..+++|+|.|||++++||||+||+|
T Consensus 118 ~~~~~g~~F~i~nPn~~~~CgCG~SF~v 145 (145)
T 2d2a_A 118 VREGLNQIFKFHNPKAQNECGCGESFGV 145 (145)
T ss_dssp EEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred EECCCCCEEEEECCCCCCCCCCCCCCCC
T ss_conf 4568866079989898952489877759
No 2
>>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} (A:)
Probab=100.00 E-value=3e-35 Score=226.89 Aligned_cols=109 Identities=44% Similarity=0.855 Sum_probs=104.5
Q ss_pred CCCCEEECHHHHHHHHHHHHHC-CCCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHHHHHCCCCEE
Q ss_conf 9840331889999999999728-988479999836887651465333210352113004687899984677654068799
Q gi|254780287|r 1 MVPIIKITDAAATQIKTILESN-SDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEI 79 (109)
Q Consensus 1 M~~mi~iT~~A~~~i~~l~~~~-~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~I 79 (109)
|++||+||++|+++|+++++++ .+.++|||+|+++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|++|
T Consensus 5 ~~~~i~IT~~A~~~i~~ll~~~~~~~~~lRi~v~~~GC~G~~y~l~~~~~~~~~D~v~~~~g~~v~id~~~~~~l~g~~i 84 (114)
T 2apn_A 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTV 84 (114)
T ss_dssp SCCSCEECSHHHHHHHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEE
T ss_pred CCCCCEECHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEEECCCCCCCCCEEEEECCEEEEECCHHHHCCCCCEE
T ss_conf 66882889999999999998579997269999845888981565301466799978999499599998526410189899
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 987278545238988888887788622469
Q gi|254780287|r 80 DFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 80 Dy~~~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
||+++..++||+|+|||++++||||+||++
T Consensus 85 Dy~~~~~~~gF~i~nPn~~~~C~CG~sf~~ 114 (114)
T 2apn_A 85 DYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 (114)
T ss_dssp EEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred EEEECCCCCCEEEECCCCCCCCCCCCCCCC
T ss_conf 986568866279979997966389754409
No 3
>>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} (A:)
Probab=100.00 E-value=2.7e-35 Score=227.08 Aligned_cols=106 Identities=25% Similarity=0.589 Sum_probs=101.2
Q ss_pred CEEECHHHHHHHHHHHHHCC---CCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHHHHHCCCCEEE
Q ss_conf 03318899999999997289---884799998368876514653332103521130046878999846776540687999
Q gi|254780287|r 4 IIKITDAAATQIKTILESNS---DKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEID 80 (109)
Q Consensus 4 mi~iT~~A~~~i~~l~~~~~---~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~ID 80 (109)
||+||++|+++|+++++.++ +.++|||.|+++||+|++|.|.|+++++++|++++.+|++|+||+++++||+|++||
T Consensus 1 Mi~IT~~A~~~i~~l~~~~~~~~~~~~lRi~v~~~GC~G~~y~l~l~~~~~~~D~v~~~~gi~v~vd~~s~~~L~g~~iD 80 (112)
T 1x0g_A 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLRVD 80 (112)
T ss_dssp CCEECHHHHHHTCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCEEE
T ss_pred CEEECHHHHHHHHHHHHHCCCCCCCEEEEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCEEEEECCHHHHCCCCEEE
T ss_conf 98969999999999997513358850899998479857857562121111332311144786899918425045986998
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 87278545238988888887788622469
Q gi|254780287|r 81 FVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 81 y~~~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
|+++..+++|+|+|||++++||||+||++
T Consensus 81 y~~~~~~~gF~i~nPn~~~~CgCG~SF~~ 109 (112)
T 1x0g_A 81 YIEDLMGGAFRFHNPNASQTCGCGMAFRV 109 (112)
T ss_dssp EEEETTEEEEEEECTTCSEECSSSSEEEC
T ss_pred EECCCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf 73388767079989998841689987205
No 4
>>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} (A:)
Probab=99.75 E-value=1.2e-19 Score=135.79 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=84.5
Q ss_pred CCEEECHHHHHHHHHHHHHCCC------CCEEEEEEECCCCC-CEEEEEHHHHCCCCC-CCEECCC-CEEEEECHHHHHH
Q ss_conf 4033188999999999972898------84799998368876-514653332103521-1300468-7899984677654
Q gi|254780287|r 3 PIIKITDAAATQIKTILESNSD------KKALRITIEGGGCS-GFSYKFDLESKQSED-DIVFEKN-GAQIFIDKISLAY 73 (109)
Q Consensus 3 ~mi~iT~~A~~~i~~l~~~~~~------~~~lRi~v~~gGCs-G~~y~l~~~~~~~~~-D~v~~~~-gi~v~vd~~s~~~ 73 (109)
.-|+|||+|+++|+++++.++. ...+|+.++++||+ |..|.|.+.+++.++ |.+++.+ |++|+|++.++.|
T Consensus 4 M~ItiT~~A~~~L~~~l~~~~~~~l~~~dg~~~~s~~G~gCs~g~~y~l~~v~~~~~~~d~~iesn~G~~i~v~~~s~~f 83 (141)
T 2qgo_A 4 LNIKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFDKTM 83 (141)
T ss_dssp CBEEECHHHHHHHHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHHHTT
T ss_pred EEEEECHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCCCEEEECCEEEEEEEECCCCCCCEEECCCCCCEEEECCCCHHH
T ss_conf 89998999999999842889549999847987122018766508998899983678986636037898536766642422
Q ss_pred C-CCCEEEEEECCCCCEEEEECCCCC--------CCCCCCCCCC
Q ss_conf 0-687999872785452389888888--------8778862246
Q gi|254780287|r 74 L-TNSEIDFVDNLLSKSFQIRNPNAT--------SNCGCGTSFS 108 (109)
Q Consensus 74 L-~g~~IDy~~~~~g~gF~i~nPna~--------~~CgCG~SF~ 108 (109)
| +|++|||++ ++|+|+|||+. ..||||+||+
T Consensus 84 ld~gl~iD~~~----~~f~l~npn~~l~~nv~i~~~~~~~~s~~ 123 (141)
T 2qgo_A 84 LGPNMVMDYNA----GSLSLSSDEGLLDGSVDIGNGAALLKANK 123 (141)
T ss_dssp SCSSEEEEEET----TEEEEEETTEEEEEEEEEEEHHHHHHHHH
T ss_pred CCCCEEEECCC----CEEEECCCCCEECCCCEEEECHHHHHHHH
T ss_conf 17881882588----97887486534259827977354333664
No 5
>>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:1-22,A:70-118)
Probab=99.49 E-value=1.2e-14 Score=106.59 Aligned_cols=42 Identities=36% Similarity=0.832 Sum_probs=38.9
Q ss_pred HHHHHHCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 677654068799987278545238988888887788622469
Q gi|254780287|r 68 KISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 68 ~~s~~~L~g~~IDy~~~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
..-.+||+|++|||++++++++|+|.||||+++||||+||++
T Consensus 19 ~~~~~yL~GstIDY~~~li~sgF~f~NPNA~~sCGCG~SFs~ 60 (71)
T 1r94_A 19 NRGKQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 60 (71)
T ss_dssp HHCCHHHTTCEEEEEEETTEEEEEEECTTCCC----------
T ss_pred HCCCHHHCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCEEE
T ss_conf 489976368699881068867379989998850689866503
No 6
>>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:1-29,A:82-124)
Probab=99.39 E-value=1.2e-13 Score=100.66 Aligned_cols=37 Identities=49% Similarity=0.945 Sum_probs=34.6
Q ss_pred HCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf 4068799987278545238988888887788622469
Q gi|254780287|r 73 YLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 (109)
Q Consensus 73 ~L~g~~IDy~~~~~g~gF~i~nPna~~~CgCG~SF~~ 109 (109)
.-.|++|||++++++++|+|.||||+++||||+||++
T Consensus 27 ~~~GttIDYve~li~sgF~f~NPNA~~sCGCGeSFsv 63 (72)
T 1nwb_A 27 NNIGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 63 (72)
T ss_dssp TTCTCEEEEEEETTEEEEEEECC--------------
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEE
T ss_conf 3789999974168867079989898952488568832
No 7
>>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:30-81)
Probab=99.38 E-value=1.4e-13 Score=100.22 Aligned_cols=52 Identities=38% Similarity=0.796 Sum_probs=49.8
Q ss_pred CCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHHHHHCC
Q ss_conf 8847999983688765146533321035211300468789998467765406
Q gi|254780287|r 24 DKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLT 75 (109)
Q Consensus 24 ~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~~~L~ 75 (109)
+.++|||+|++||||||+|.|++++++.++|.+++.+|++|+||++|++||+
T Consensus 1 ~~~glRi~V~~gGCsG~~Y~~~~~~~~~~~D~v~~~~g~~v~vd~~s~~~L~ 52 (52)
T 1nwb_A 1 ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVN 52 (52)
T ss_dssp SSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGST
T ss_pred CCCEEEEEEECCCCCCEEEEEEECCCCCCCCEEEECCCEEEEECHHHHHHHC
T ss_conf 8857999981899787376554445534565157628749998737863518
No 8
>>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} (A:)
Probab=99.35 E-value=1e-12 Score=95.23 Aligned_cols=90 Identities=20% Similarity=0.298 Sum_probs=72.6
Q ss_pred CCEEECHHHHHHHHHHHHHCCCCCEEEEE------EECCCCC-CEEEEEHHHHC----CCCCCCEECCCCEEEEECHHHH
Q ss_conf 40331889999999999728988479999------8368876-51465333210----3521130046878999846776
Q gi|254780287|r 3 PIIKITDAAATQIKTILESNSDKKALRIT------IEGGGCS-GFSYKFDLESK----QSEDDIVFEKNGAQIFIDKISL 71 (109)
Q Consensus 3 ~mi~iT~~A~~~i~~l~~~~~~~~~lRi~------v~~gGCs-G~~y~l~~~~~----~~~~D~v~~~~gi~v~vd~~s~ 71 (109)
.-|+||++|+++|++++.+.+....||+. .+++||+ |..|.|.+.++ +.+.|.+++.++++|+|++.+.
T Consensus 3 M~ItiTe~A~~~l~~~~~~~~~~l~L~~ddG~g~~s~gc~C~~g~~y~l~~v~e~~~~~~~~d~~ie~~~~~i~i~~~s~ 82 (128)
T 2p2e_A 3 LKITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDXDYKKDYNEVIDSNIGKFYYKGYSK 82 (128)
T ss_dssp CEEEECHHHHHHHHHHHTCTTEEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGGGG
T ss_pred EEEEECHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCH
T ss_conf 89998999999999864767866999984898866667620138898999981777889743557426876688866131
Q ss_pred HHC-CCCEEEEEECCCCCEEEEEC
Q ss_conf 540-68799987278545238988
Q gi|254780287|r 72 AYL-TNSEIDFVDNLLSKSFQIRN 94 (109)
Q Consensus 72 ~~L-~g~~IDy~~~~~g~gF~i~n 94 (109)
.|| .|++|||.+.. ..|.+++
T Consensus 83 ~fld~g~~lD~~~~~--~~l~Lks 104 (128)
T 2p2e_A 83 XYXDDNXKISLNTNN--SLLRLTG 104 (128)
T ss_dssp GGSCSEEEEEECSSS--SCEEEEE
T ss_pred HHCCCCCEEEECCCC--CEEEEEC
T ss_conf 111897389885888--8899605
No 9
>>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:23-69)
Probab=99.28 E-value=3.4e-12 Score=92.16 Aligned_cols=47 Identities=34% Similarity=0.718 Sum_probs=45.0
Q ss_pred CCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHHH
Q ss_conf 84799998368876514653332103521130046878999846776
Q gi|254780287|r 25 KKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISL 71 (109)
Q Consensus 25 ~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s~ 71 (109)
+.+|||+|+++|||||+|.|+|+++++++|.+++.+|++|+||++|+
T Consensus 1 g~glRi~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~gi~v~vd~~Sl 47 (47)
T 1r94_A 1 GFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSL 47 (47)
T ss_dssp CSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGH
T ss_pred CEEEEEEEECCCCCCEEEEEEECCCCCCCCEEEEECCEEEEECHHHH
T ss_conf 72899999179988748998774679999899995998999988999
No 10
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:1-41,A:90-125)
Probab=94.54 E-value=0.026 Score=34.43 Aligned_cols=27 Identities=22% Similarity=0.351 Sum_probs=22.0
Q ss_pred HHCCCCEEEEEEC-CCCCEEEEECCCCC
Q ss_conf 5406879998727-85452389888888
Q gi|254780287|r 72 AYLTNSEIDFVDN-LLSKSFQIRNPNAT 98 (109)
Q Consensus 72 ~~L~g~~IDy~~~-~~g~gF~i~nPna~ 98 (109)
.+|+|+++||++- ..+-.|+|.|||-.
T Consensus 42 sLLeg~vlDfveie~g~~hFIFmNPNDP 69 (77)
T 2k4z_A 42 SLLDQTTLDYVELEPGQFHFIFLNPRDP 69 (77)
T ss_dssp HHHTTEEEEEEEEETTEEEEEEECSSSC
T ss_pred CCCCCEEEEEECCCCCCCCEEEECCCCC
T ss_conf 4059769988627887278798793999
No 11
>>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} (A:42-89)
Probab=93.20 E-value=0.11 Score=30.79 Aligned_cols=46 Identities=22% Similarity=0.387 Sum_probs=36.5
Q ss_pred CCCEEEEEEECCCCCCEEEEEHHHHCCCCCCCEECCCCEEEEECHHH
Q ss_conf 88479999836887651465333210352113004687899984677
Q gi|254780287|r 24 DKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKIS 70 (109)
Q Consensus 24 ~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~~~~gi~v~vd~~s 70 (109)
++..|||....---.-..|.|.|++ ..++|..+..+|+.++++|..
T Consensus 2 egm~LRlaa~Rn~DGsIeY~MGFDd-~~d~Di~~~sEGv~iVi~P~~ 47 (48)
T 2k4z_A 2 EGMCLRLAAGRNPDGSIDYRMGFDD-LTEDDIRLTSEGVEIVIAPDY 47 (48)
T ss_dssp TTCEEEEEEEECTTSCEEEEEEEEC-CCSSSCEEECSSCEEECCTTT
T ss_pred CCCEEEEEEECCCCCCCEEEEEECC-CCCCEEEEECCCCEEEECCCC
T ss_conf 8717999982699898487677424-664249998267459971310
No 12
>>1vs6_Z 50S ribosomal protein L31; ribosome, kasugamycin; 3.46A {Escherichia coli} (Z:1-28)
Probab=52.38 E-value=5.8 Score=20.70 Aligned_cols=12 Identities=33% Similarity=0.969 Sum_probs=10.3
Q ss_pred CCCCCCCCCCCC
Q ss_conf 888778862246
Q gi|254780287|r 97 ATSNCGCGTSFS 108 (109)
Q Consensus 97 a~~~CgCG~SF~ 108 (109)
.+-.|.||+.|.
T Consensus 12 ~~v~CsCGn~f~ 23 (28)
T 1vs6_Z 12 ITASCSCGNVMK 23 (28)
T ss_dssp CBCCCCSSCCCC
T ss_pred EEEEECCCCEEE
T ss_conf 999978999999
No 13
>>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} (A:1-34)
Probab=39.37 E-value=9.4 Score=19.47 Aligned_cols=13 Identities=38% Similarity=0.950 Sum_probs=10.1
Q ss_pred CCCCCCCCCCCCC
Q ss_conf 8888778862246
Q gi|254780287|r 96 NATSNCGCGTSFS 108 (109)
Q Consensus 96 na~~~CgCG~SF~ 108 (109)
+-..-|-||.||+
T Consensus 8 dKl~~C~CGKsFt 20 (34)
T 2csh_A 8 DKLYPCQCGKSFT 20 (34)
T ss_dssp CCCEECTTSCEES
T ss_pred CCCCCCCCCCEEC
T ss_conf 9797279998268
No 14
>>2d0b_A RNAse HIII, ribonuclease HIII; RNA/DNA hybrid, hydrolase; 2.10A {Geobacillus stearothermophilus} PDB: 2d0a_A 2d0c_A (A:1-82)
Probab=25.21 E-value=54 Score=15.03 Aligned_cols=35 Identities=6% Similarity=0.077 Sum_probs=28.6
Q ss_pred CEEECHHHHHHHHHHHHHC---CCCCEEEEEEECCCCC
Q ss_conf 0331889999999999728---9884799998368876
Q gi|254780287|r 4 IIKITDAAATQIKTILESN---SDKKALRITIEGGGCS 38 (109)
Q Consensus 4 mi~iT~~A~~~i~~l~~~~---~~~~~lRi~v~~gGCs 38 (109)
.|++|+..+++|++..+.. ....|.|+.++..||.
T Consensus 5 v~kl~~~q~~~l~~~y~~~~~~~~~py~~F~aK~~~~t 42 (82)
T 2d0b_A 5 VIQADQQLLDALRAHYEGALSDRLPAGALFAVKRPDVV 42 (82)
T ss_dssp EEECCHHHHHHHHHHSTTCBCSSCCTTEEEEECCTTCE
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCE
T ss_conf 99669999999999998741347997758999479958
No 15
>>1anp_A Atrial natriuretic peptide; hypotensive hormone; NMR {Homo sapiens} (A:)
Probab=22.21 E-value=23 Score=17.21 Aligned_cols=14 Identities=43% Similarity=1.082 Sum_probs=8.8
Q ss_pred EEEEECC-CCCCEEE
Q ss_conf 9998368-8765146
Q gi|254780287|r 29 RITIEGG-GCSGFSY 42 (109)
Q Consensus 29 Ri~v~~g-GCsG~~y 42 (109)
||++++| ||+-|.|
T Consensus 14 ~igaqsglgcns~r~ 28 (28)
T 1anp_A 14 SIRAQSGLGCNSFRY 28 (28)
T ss_pred HHCCCCCCCCCCCCC
T ss_conf 000334667454549
No 16
>>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} (A:1-40)
Probab=21.67 E-value=37 Score=15.98 Aligned_cols=10 Identities=30% Similarity=1.089 Sum_probs=7.8
Q ss_pred CCC---CCCCCCC
Q ss_conf 877---8862246
Q gi|254780287|r 99 SNC---GCGTSFS 108 (109)
Q Consensus 99 ~~C---gCG~SF~ 108 (109)
..| +||.+|+
T Consensus 13 y~C~~~~CgK~F~ 25 (40)
T 1tf6_A 13 YICSFADCGAAYN 25 (40)
T ss_dssp CBCSSTTTCCBCS
T ss_pred EECCCCCCCCEEC
T ss_conf 7897888989829
No 17
>>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A* (A:)
Probab=20.31 E-value=26 Score=16.88 Aligned_cols=17 Identities=12% Similarity=0.227 Sum_probs=6.9
Q ss_pred ECHHHHHHHHHHHHHCC
Q ss_conf 18899999999997289
Q gi|254780287|r 7 ITDAAATQIKTILESNS 23 (109)
Q Consensus 7 iT~~A~~~i~~l~~~~~ 23 (109)
|...-.+.+.+..++++
T Consensus 6 ia~~ii~~v~~~a~~~~ 22 (139)
T 3a43_A 6 LADAIVRTVLDYAQREG 22 (139)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHCC
T ss_conf 99999999999999839
Done!