RPS-BLAST 2.2.22 [Sep-27-2009]
Database: mmdb70
33,805 sequences; 4,956,049 total letters
Searching..................................................done
Query= gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly
accessory protein [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal
transport; 2.70A {Escherichia coli} (A:)
Length = 145
Score = 125 bits (314), Expect = 3e-30
Identities = 35/107 (32%), Positives = 64/107 (59%)
Query: 3 PIIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62
+ +T AAA I+ ++ +R+ ++ GC+GF Y D S+ +DD++FE +GA
Sbjct: 39 QGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGA 98
Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
++F+ ++ ++ +E+DFV L++ F+ NP A + CGCG SF +
Sbjct: 99 KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145
>2apn_A Protein HI1723; HI1723 solution structure, structural
genomics, structure 2 function project, S2F, unknown
function; NMR {Haemophilus influenzae} (A:)
Length = 114
Score = 122 bits (308), Expect = 1e-29
Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 1/110 (0%)
Query: 1 MVPIIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEK 59
M + TDAAA ++K+++ + LR+ I GGGCSGF Y F + K ++ D+ EK
Sbjct: 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEK 64
Query: 60 NGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
+G Q+ ID +SL YL +D+ + L F + NPNATS CGCG+SFSI
Sbjct: 65 SGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain
swapping, Fe- S cluster, iron, iron-sulfur cluster
protein, scaffold, sulfur; 2.50A {Thermosynechococcus
elongatus} (A:)
Length = 112
Score = 117 bits (295), Expect = 4e-28
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 4 IIKITDAAATQIKTILE---SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60
++++T AA +++ + LRI ++ C + Y L ++ D++ +
Sbjct: 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ 60
Query: 61 GAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
G I I + L +D++++L+ +F+ NPNA+ CGCG +F +
Sbjct: 61 GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G,
Fe-S cluster protein, structural genomics; 2.04A
{Lactobacillus acidophilus ncfm} (A:)
Length = 141
Score = 95.3 bits (237), Expect = 2e-21
Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%)
Query: 5 IKITDAAATQIKTILESNS------DKKALRITIEGGGCS-GFSYKFDL-ESKQSEDDIV 56
IK TD A +K + D + +I+GG CS G + + + +
Sbjct: 6 IKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVK 65
Query: 57 FEKN-GAQIFIDKISLAYLTN-SEIDFVDNLLSKSFQIRNPNATSN--------CGCGTS 106
+I+ L +D+ S + + + +
Sbjct: 66 IANEQNVKIYTSDFDKTMLGPNMVMDYNAG----SLSLSSDEGLLDGSVDIGNGAALLKA 121
Query: 107 FS 108
Sbjct: 122 NK 123
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics,
protein structure initiative, NESG, reduced
dimensionality PSI; NMR {Aquifex aeolicus} (A:30-81)
Length = 52
Score = 77.7 bits (192), Expect = 6e-16
Identities = 20/51 (39%), Positives = 28/51 (54%)
Query: 24 DKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYL 74
+ LRI + GGCSGF Y + E D VFE +G ++ ID S+ Y+
Sbjct: 1 ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYV 51
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein,
beta-barrel, structural genomics, protein structure
initiative, PSI-2; 2.48A {Lactobacillus salivarius
UCC118} (A:)
Length = 128
Score = 74.0 bits (182), Expect = 7e-15
Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 14/105 (13%)
Query: 5 IKITDAAATQIKTILESNSDKKALRITI------EGGGCS-GFSYKFDL----ESKQSED 53
I +TD AA +++ + ++ L + G CS ++ + + +
Sbjct: 5 ITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDXDYKKDY 64
Query: 54 DIVFEKNGAQIFIDKISLAYLT-NSEIDFVDNLLSKSFQIRNPNA 97
+ V + N + + S Y N +I N ++ N+
Sbjct: 65 NEVIDSNIGKFYYKGYSKXYXDDNXKISLNTNN--SLLRLTGDNS 107
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster
protein, pseudo-symmetric motifs, metal transport;
2.30A {Escherichia coli} (A:23-69)
Length = 47
Score = 71.9 bits (177), Expect = 3e-14
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 27 ALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISL 71
LR+ + GCSG +Y + + + +DIVFE G ++ +D SL
Sbjct: 3 GLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSL 47
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster
protein, pseudo-symmetric motifs, metal transport; 2.30A
{Escherichia coli} (A:1-22,A:70-118)
Length = 71
Score = 63.4 bits (154), Expect = 1e-11
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 73 YLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
+L +++DFV L++ F+ NPN CGCG SF +
Sbjct: 24 FLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 60
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics,
protein structure initiative, NESG, reduced
dimensionality PSI; NMR {Aquifex aeolicus}
(A:1-29,A:82-124)
Length = 72
Score = 59.2 bits (143), Expect = 2e-10
Identities = 20/44 (45%), Positives = 29/44 (65%)
Query: 66 IDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
I K++ +E+D+V + + F IRNPNAT +CGCG+SFS
Sbjct: 20 IKKVAQENNIGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 63
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit;
flavoenzyme, electron transfer, folate- methylating
enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A
{Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B*
1vrq_B* (B:1-60,B:173-240,B:335-405)
Length = 199
Score = 30.5 bits (68), Expect = 0.077
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%)
Query: 7 ITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDI-VFEKN 60
+ D + + + KK+ I GGG G + + L ++ V EK
Sbjct: 1 MADLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>6ldh_A M4 APO-lactate dehydrogenase;
oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:)
Length = 330
Score = 28.1 bits (61), Expect = 0.47
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 15 IKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56
I + S + +IT+ G G G + + K D++
Sbjct: 9 IGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVA 50
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer,
rossmann fold, oxidoreductase; HET: CME A3D; 1.60A
{Toxoplasma gondii ME49} (A:)
Length = 331
Score = 27.3 bits (59), Expect = 0.71
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSED----DIVFEK 59
++ ++ + G G G + + ++ D D+V
Sbjct: 3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM 45
>1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination,
helicase, hydrolase, DNA repair; HET: DNA; 3.1A
{Escherichia coli} (C:463-584)
Length = 122
Score = 27.0 bits (60), Expect = 0.91
Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 3/67 (4%)
Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEID 80
+ + LR + SG + D ++ + + ++ + + ++ L Y S
Sbjct: 24 TEEGLRYLRQWVNE---SGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 80
Query: 81 FVDNLLS 87
++L
Sbjct: 81 EWQSVLP 87
>2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta
protein, structural genomics, PSI, protein structure
initiative; 2.90A {Legionella pneumophila}
(A:1-28,A:186-325,A:428-470)
Length = 211
Score = 26.3 bits (58), Expect = 1.6
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 59 KNGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPN 96
+ G +IFI LTNSE + LL +
Sbjct: 43 RYGKKIFI-------LTNSEYSYSKLLLDYALSPFLDK 73
>3fn2_A Putative sensor histidine kinase domain; GUT microbiome,
structural genomics, PSI-2, protein structure
initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc
14940} (A:48-106)
Length = 59
Score = 26.1 bits (57), Expect = 1.9
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60
++ITD I S DK +T EG G+ +F ++ K E++I+ ++N
Sbjct: 5 VRITDKDGQVITYEDGSVQDKTVF-LTNEGANKLGWKLEFLIDEKXFEEEILEKQN 59
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A));
HET: NAD; 2.00A {Bifidobacterium longum subsp} (A:)
Length = 319
Score = 25.7 bits (55), Expect = 2.2
Identities = 7/36 (19%), Positives = 15/36 (41%)
Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56
+ + K ++ + G G G + F + +IV
Sbjct: 1 AETTVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIV 36
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis,
NAD, oxidoreductase, phosphoprotein; 1.80A
{Staphylococcus aureus} PDB: 3d4p_A* (A:)
Length = 317
Score = 25.7 bits (55), Expect = 2.2
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVF 57
+ K ++ + G G G SY F L ++ D++V
Sbjct: 2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVI 36
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural
genomics, PSI, protein structure initiative; 2.31A
{Geobacillus stearothermophilus} (A:1-175,A:282-450)
Length = 344
Score = 25.3 bits (55), Expect = 2.8
Identities = 14/54 (25%), Positives = 21/54 (38%)
Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYL 74
S++ K L+I GGG S + K+ + V E I K L +
Sbjct: 1 SDAXDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV 54
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog
complex, oxidoreductase; HET: A3D; 2.00A
{Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A*
2fm3_A (A:)
Length = 317
Score = 25.0 bits (53), Expect = 3.3
Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%)
Query: 25 KKALRITIEGGGCSGFSYKFDLESKQSED----DIVFEK 59
+ +I + G G G + + + D DI
Sbjct: 2 IERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGI 40
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer,
ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus
fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* (A:91-179)
Length = 89
Score = 25.1 bits (55), Expect = 3.6
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%)
Query: 3 PIIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFE 58
P + I+ QI+ I + D K L+ YK + + DD+ +
Sbjct: 13 PNVGISAEKIRQIEAITKREVDSKPLQEIFH-------RYK---KGEIDGDDLSYL 58
>2v65_A LDH-A, L-lactate dehydrogenase A chain; oxidoreductase,
NAD, FISH, cytoplasm, glycolysis, psychrophIle; 2.35A
{Champsocephalus gunnari} (A:)
Length = 331
Score = 24.5 bits (52), Expect = 4.6
Identities = 7/42 (16%), Positives = 17/42 (40%)
Query: 15 IKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56
I +++ ++T+ G G G + + K D++
Sbjct: 8 ISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELA 49
>3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral
fusion protein, envelope protein; HET: NAG; 1.60A
{Influenza a virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A*
1jso_A* (A:1-40,A:289-327)
Length = 79
Score = 23.6 bits (51), Expect = 8.6
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 18/53 (33%)
Query: 67 DKISLAYLTNSEIDFVDNLL------------------SKSFQIRNPNATSNC 101
D+I + Y N+ + VD +L + F +P C
Sbjct: 3 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNTLPFHNVHPLTIGEC 55
Database: mmdb70
Posted date: Jun 20, 2010 3:12 AM
Number of letters in database: 4,956,049
Number of sequences in database: 33,805
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0418 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 758,443
Number of extensions: 28143
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 26
Length of query: 109
Length of database: 4,956,049
Length adjustment: 65
Effective length of query: 44
Effective length of database: 2,758,724
Effective search space: 121383856
Effective search space used: 121383856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)