RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus Liberibacter asiaticus str. psy62] (109 letters) >2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} (A:) Length = 145 Score = 125 bits (314), Expect = 3e-30 Identities = 35/107 (32%), Positives = 64/107 (59%) Query: 3 PIIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62 + +T AAA I+ ++ +R+ ++ GC+GF Y D S+ +DD++FE +GA Sbjct: 39 QGLTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGA 98 Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 ++F+ ++ ++ +E+DFV L++ F+ NP A + CGCG SF + Sbjct: 99 KLFVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145 >2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} (A:) Length = 114 Score = 122 bits (308), Expect = 1e-29 Identities = 48/110 (43%), Positives = 68/110 (61%), Gaps = 1/110 (0%) Query: 1 MVPIIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEK 59 M + TDAAA ++K+++ + LR+ I GGGCSGF Y F + K ++ D+ EK Sbjct: 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEK 64 Query: 60 NGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 +G Q+ ID +SL YL +D+ + L F + NPNATS CGCG+SFSI Sbjct: 65 SGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 >1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} (A:) Length = 112 Score = 117 bits (295), Expect = 4e-28 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 4 IIKITDAAATQIKTILE---SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60 ++++T AA +++ + LRI ++ C + Y L ++ D++ + Sbjct: 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ 60 Query: 61 GAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 G I I + L +D++++L+ +F+ NPNA+ CGCG +F + Sbjct: 61 GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109 >2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} (A:) Length = 141 Score = 95.3 bits (237), Expect = 2e-21 Identities = 17/122 (13%), Positives = 34/122 (27%), Gaps = 22/122 (18%) Query: 5 IKITDAAATQIKTILESNS------DKKALRITIEGGGCS-GFSYKFDL-ESKQSEDDIV 56 IK TD A +K + D + +I+GG CS G + + + + Sbjct: 6 IKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVK 65 Query: 57 FEKN-GAQIFIDKISLAYLTN-SEIDFVDNLLSKSFQIRNPNATSN--------CGCGTS 106 +I+ L +D+ S + + + + Sbjct: 66 IANEQNVKIYTSDFDKTMLGPNMVMDYNAG----SLSLSSDEGLLDGSVDIGNGAALLKA 121 Query: 107 FS 108 Sbjct: 122 NK 123 >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:30-81) Length = 52 Score = 77.7 bits (192), Expect = 6e-16 Identities = 20/51 (39%), Positives = 28/51 (54%) Query: 24 DKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYL 74 + LRI + GGCSGF Y + E D VFE +G ++ ID S+ Y+ Sbjct: 1 ENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYV 51 >2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} (A:) Length = 128 Score = 74.0 bits (182), Expect = 7e-15 Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 14/105 (13%) Query: 5 IKITDAAATQIKTILESNSDKKALRITI------EGGGCS-GFSYKFDL----ESKQSED 53 I +TD AA +++ + ++ L + G CS ++ + + + Sbjct: 5 ITVTDDAAKKLQRYTDDSNAVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDXDYKKDY 64 Query: 54 DIVFEKNGAQIFIDKISLAYLT-NSEIDFVDNLLSKSFQIRNPNA 97 + V + N + + S Y N +I N ++ N+ Sbjct: 65 NEVIDSNIGKFYYKGYSKXYXDDNXKISLNTNN--SLLRLTGDNS 107 >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:23-69) Length = 47 Score = 71.9 bits (177), Expect = 3e-14 Identities = 16/45 (35%), Positives = 26/45 (57%) Query: 27 ALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISL 71 LR+ + GCSG +Y + + + +DIVFE G ++ +D SL Sbjct: 3 GLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSL 47 >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} (A:1-22,A:70-118) Length = 71 Score = 63.4 bits (154), Expect = 1e-11 Identities = 15/37 (40%), Positives = 23/37 (62%) Query: 73 YLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 +L +++DFV L++ F+ NPN CGCG SF + Sbjct: 24 FLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 60 >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} (A:1-29,A:82-124) Length = 72 Score = 59.2 bits (143), Expect = 2e-10 Identities = 20/44 (45%), Positives = 29/44 (65%) Query: 66 IDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 I K++ +E+D+V + + F IRNPNAT +CGCG+SFS Sbjct: 20 IKKVAQENNIGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 63 >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate- methylating enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* (B:1-60,B:173-240,B:335-405) Length = 199 Score = 30.5 bits (68), Expect = 0.077 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 7 ITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDI-VFEKN 60 + D + + + KK+ I GGG G + + L ++ V EK Sbjct: 1 MADLLPEHPEFLWANPEPKKSYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55 >6ldh_A M4 APO-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); 2.00A {} (A:) Length = 330 Score = 28.1 bits (61), Expect = 0.47 Identities = 9/42 (21%), Positives = 17/42 (40%) Query: 15 IKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56 I + S + +IT+ G G G + + K D++ Sbjct: 9 IGHLATSQEPRSYNKITVVGVGAVGMACAISILMKDLADEVA 50 >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii ME49} (A:) Length = 331 Score = 27.3 bits (59), Expect = 0.71 Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 4/43 (9%) Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSED----DIVFEK 59 ++ ++ + G G G + + ++ D D+V Sbjct: 3 PALVQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGM 45 >1w36_C RECC, exodeoxyribonuclease V gamma chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} (C:463-584) Length = 122 Score = 27.0 bits (60), Expect = 0.91 Identities = 9/67 (13%), Positives = 25/67 (37%), Gaps = 3/67 (4%) Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYLTNSEID 80 + + LR + SG + D ++ + + ++ + + ++ L Y S Sbjct: 24 TEEGLRYLRQWVNE---SGIRWGIDDDNVRELELPATGQHTWRFGLTRMLLGYAMESAQG 80 Query: 81 FVDNLLS 87 ++L Sbjct: 81 EWQSVLP 87 >2bde_A Cytosolic IMP-GMP specific 5'-nucleotidase; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.90A {Legionella pneumophila} (A:1-28,A:186-325,A:428-470) Length = 211 Score = 26.3 bits (58), Expect = 1.6 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 7/38 (18%) Query: 59 KNGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPN 96 + G +IFI LTNSE + LL + Sbjct: 43 RYGKKIFI-------LTNSEYSYSKLLLDYALSPFLDK 73 >3fn2_A Putative sensor histidine kinase domain; GUT microbiome, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Clostridium symbiosum atcc 14940} (A:48-106) Length = 59 Score = 26.1 bits (57), Expect = 1.9 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60 ++ITD I S DK +T EG G+ +F ++ K E++I+ ++N Sbjct: 5 VRITDKDGQVITYEDGSVQDKTVF-LTNEGANKLGWKLEFLIDEKXFEEEILEKQN 59 >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} (A:) Length = 319 Score = 25.7 bits (55), Expect = 2.2 Identities = 7/36 (19%), Positives = 15/36 (41%) Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56 + + K ++ + G G G + F + +IV Sbjct: 1 AETTVKPTKLAVIGAGAVGSTLAFAAAQRGIAREIV 36 >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* (A:) Length = 317 Score = 25.7 bits (55), Expect = 2.2 Identities = 10/35 (28%), Positives = 18/35 (51%) Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVF 57 + K ++ + G G G SY F L ++ D++V Sbjct: 2 NKFKGNKVVLIGNGAVGSSYAFSLVNQSIVDELVI 36 >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initiative; 2.31A {Geobacillus stearothermophilus} (A:1-175,A:282-450) Length = 344 Score = 25.3 bits (55), Expect = 2.8 Identities = 14/54 (25%), Positives = 21/54 (38%) Query: 21 SNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISLAYL 74 S++ K L+I GGG S + K+ + V E I K L + Sbjct: 1 SDAXDKRLKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIV 54 >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A (A:) Length = 317 Score = 25.0 bits (53), Expect = 3.3 Identities = 7/39 (17%), Positives = 13/39 (33%), Gaps = 4/39 (10%) Query: 25 KKALRITIEGGGCSGFSYKFDLESKQSED----DIVFEK 59 + +I + G G G + + + D DI Sbjct: 2 IERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGI 40 >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* (A:91-179) Length = 89 Score = 25.1 bits (55), Expect = 3.6 Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 3 PIIKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFE 58 P + I+ QI+ I + D K L+ YK + + DD+ + Sbjct: 13 PNVGISAEKIRQIEAITKREVDSKPLQEIFH-------RYK---KGEIDGDDLSYL 58 >2v65_A LDH-A, L-lactate dehydrogenase A chain; oxidoreductase, NAD, FISH, cytoplasm, glycolysis, psychrophIle; 2.35A {Champsocephalus gunnari} (A:) Length = 331 Score = 24.5 bits (52), Expect = 4.6 Identities = 7/42 (16%), Positives = 17/42 (40%) Query: 15 IKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIV 56 I +++ ++T+ G G G + + K D++ Sbjct: 8 ISHVMKEEPVGSRSKVTVVGVGMVGMASAISILLKDLCDELA 49 >3ku3_A Hemagglutinin HA1 chain; viral envelope protein, viral fusion protein, envelope protein; HET: NAG; 1.60A {Influenza a virus} PDB: 3ku6_A* 3ku5_A* 1jsm_A* 1jsn_A* 1jso_A* (A:1-40,A:289-327) Length = 79 Score = 23.6 bits (51), Expect = 8.6 Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 18/53 (33%) Query: 67 DKISLAYLTNSEIDFVDNLL------------------SKSFQIRNPNATSNC 101 D+I + Y N+ + VD +L + F +P C Sbjct: 3 DQICIGYHANNSTEKVDTILERNVTVTHAKDILEKTHNTLPFHNVHPLTIGEC 55 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0418 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 758,443 Number of extensions: 28143 Number of successful extensions: 108 Number of sequences better than 10.0: 1 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 26 Length of query: 109 Length of database: 4,956,049 Length adjustment: 65 Effective length of query: 44 Effective length of database: 2,758,724 Effective search space: 121383856 Effective search space used: 121383856 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.8 bits)