RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly
accessory protein [Candidatus Liberibacter asiaticus str. psy62]
(109 letters)
>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein,
pseudo-symmetric motifs, metal transport; 2.30A
{Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A
Length = 118
Score = 134 bits (339), Expect = 4e-33
Identities = 37/105 (35%), Positives = 61/105 (58%)
Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQI 64
I ++D+AA ++ T L + LR+ + GCSG +Y + + + +DIVFE G ++
Sbjct: 3 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 62
Query: 65 FIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
+D SL +L +++DFV L++ F+ NPN CGCG SF +
Sbjct: 63 VVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107
>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein
structure initiative, NESG, reduced dimensionality PSI;
NMR {Aquifex aeolicus} SCOP: b.124.1.1
Length = 124
Score = 127 bits (321), Expect = 5e-31
Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%)
Query: 4 IIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62
I K+TD A +IK + + N + LRI + GGCSGF Y + E D VFE +G
Sbjct: 9 IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68
Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
++ ID S+ Y+ +E+D+V + + F IRNPNAT +CGCG+SFS
Sbjct: 69 KVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115
>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal
transport; 2.70A {Escherichia coli}
Length = 145
Score = 124 bits (313), Expect = 4e-30
Identities = 35/105 (33%), Positives = 64/105 (60%)
Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQI 64
+ +T AAA I+ ++ +R+ ++ GC+GF Y D S+ +DD++FE +GA++
Sbjct: 41 LTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKL 100
Query: 65 FIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
F+ ++ ++ +E+DFV L++ F+ NP A + CGCG SF +
Sbjct: 101 FVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145
>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S
cluster, iron, iron-sulfur cluster protein, scaffold,
sulfur; 2.50A {Thermosynechococcus elongatus}
Length = 112
Score = 117 bits (295), Expect = 5e-28
Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 3/109 (2%)
Query: 4 IIKITDAAATQIKTILES---NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60
++++T AA +++ + LRI ++ C + Y L ++ D++ +
Sbjct: 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ 60
Query: 61 GAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
G I I + L +D++++L+ +F+ NPNA+ CGCG +F +
Sbjct: 61 GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109
>2apn_A Protein HI1723; HI1723 solution structure, structural genomics,
structure 2 function project, S2F, unknown function; NMR
{Haemophilus influenzae}
Length = 114
Score = 107 bits (269), Expect = 5e-25
Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 1 MVPIIKITDAAATQIKTILESNSDKKAL-RITIEGGGCSGFSYKFDLESKQSEDDIVFEK 59
M + TDAAA ++K+++ + R+ I GGGCSGF Y F + K ++ D+ EK
Sbjct: 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEK 64
Query: 60 NGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109
+G Q+ ID +SL YL +D+ + L F + NPNATS CGCG+SFSI
Sbjct: 65 SGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114
>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; NMR {Allochromatium vinosum}
Length = 125
Score = 87.4 bits (216), Expect = 7e-19
Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 3/98 (3%)
Query: 4 IIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62
+ K+T AAA Q+ + ++ LR+ Y+ + +D G
Sbjct: 22 MFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDI-RLTSEGV 80
Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKS-FQIRNPNATS 99
+I I ++ L + +D+V+ + F NP +
Sbjct: 81 EIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPT 118
>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein,
beta-barrel, structural genomics, protein structure
initiative, PSI-2; 2.48A {Lactobacillus salivarius
UCC118} SCOP: b.124.1.1
Length = 128
Score = 31.7 bits (72), Expect = 0.037
Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 23/112 (20%)
Query: 5 IKITDAAATQIKTILESNSDKKALRITI--------EGGGCSGFSYKFDL------ESKQ 50
I +TD AA +++ + L + + G CS + F + +
Sbjct: 5 ITVTDDAAKKLQRYTD--DSNAVLLLDFDDGVGALSKVGVCS-LNSDFRILVVSKDMDYK 61
Query: 51 SEDDIVFEKNGAQIFIDKISLAYLTNS-EIDFVD-----NLLSKSFQIRNPN 96
+ + V + N + + S Y+ ++ +I L + P
Sbjct: 62 KDYNEVIDSNIGKFYYKGYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPA 113
>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S
cluster protein, structural genomics; 2.04A
{Lactobacillus acidophilus ncfm}
Length = 141
Score = 30.9 bits (70), Expect = 0.078
Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%)
Query: 5 IKITDAAATQIKTILESNS------DKKALRITIEGGGCSGFSYKFDL---ESKQSEDDI 55
IK TD A +K + D + +I+GG C F + + + +
Sbjct: 6 IKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSC-SMGAHFSIIWLDKVDPDYPV 64
Query: 56 VFEKN-GAQIFIDKISLAYLTNS-EIDFVDNLLS 87
+I+ L + +D+ LS
Sbjct: 65 KIANEQNVKIYTSDFDKTMLGPNMVMDYNAGSLS 98
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 27.7 bits (60), Expect = 0.72
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60
S K RI I G G +G + LE D + E+
Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT 39
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis,
electron transferase; HET: FAD; 1.70A {Bos taurus}
SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A*
1e1n_A* 1e6e_A*
Length = 460
Score = 27.1 bits (59), Expect = 1.0
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDI-VFEKN 60
+ ++ +I + G G +GF L S + ++EK
Sbjct: 2 TQEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ 40
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.1 bits (56), Expect = 1.7
Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%)
Query: 5 IKI--TDAA-ATQIKTILE 20
+K+ D+A A IK +E
Sbjct: 29 LKLYADDSAPALAIKATME 47
>1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and
cellulose-binding domain; glycosyl hydrolase, cellulose
degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2
b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A*
Length = 605
Score = 24.5 bits (53), Expect = 5.2
Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 12 ATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISL 71
T+IK ++ + S A + F Y F L+ DI Q +
Sbjct: 476 FTEIKAMIRNQSGWPA----RMLDKGT-FRYWFTLDEGVDPADITVSSAYNQCATPEDVH 530
Query: 72 AYLTNS---EIDFVDN 84
+ EID
Sbjct: 531 HVSGDLYYVEIDCTGE 546
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.316 0.133 0.368
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 884,321
Number of extensions: 35014
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 125
Number of HSP's successfully gapped: 19
Length of query: 109
Length of database: 5,693,230
Length adjustment: 73
Effective length of query: 36
Effective length of database: 3,923,418
Effective search space: 141243048
Effective search space used: 141243048
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.4 bits)