RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly accessory protein [Candidatus Liberibacter asiaticus str. psy62] (109 letters) >1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118 Score = 134 bits (339), Expect = 4e-33 Identities = 37/105 (35%), Positives = 61/105 (58%) Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQI 64 I ++D+AA ++ T L + LR+ + GCSG +Y + + + +DIVFE G ++ Sbjct: 3 ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 62 Query: 65 FIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 +D SL +L +++DFV L++ F+ NPN CGCG SF + Sbjct: 63 VVDGKSLQFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKL 107 >1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124 Score = 127 bits (321), Expect = 5e-31 Identities = 46/107 (42%), Positives = 65/107 (60%), Gaps = 1/107 (0%) Query: 4 IIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62 I K+TD A +IK + + N + LRI + GGCSGF Y + E D VFE +G Sbjct: 9 IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68 Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 ++ ID S+ Y+ +E+D+V + + F IRNPNAT +CGCG+SFS Sbjct: 69 KVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSFSC 115 >2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145 Score = 124 bits (313), Expect = 4e-30 Identities = 35/105 (33%), Positives = 64/105 (60%) Query: 5 IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQI 64 + +T AAA I+ ++ +R+ ++ GC+GF Y D S+ +DD++FE +GA++ Sbjct: 41 LTLTPAAAIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKL 100 Query: 65 FIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 F+ ++ ++ +E+DFV L++ F+ NP A + CGCG SF + Sbjct: 101 FVPLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFGV 145 >1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112 Score = 117 bits (295), Expect = 5e-28 Identities = 26/109 (23%), Positives = 54/109 (49%), Gaps = 3/109 (2%) Query: 4 IIKITDAAATQIKTILES---NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60 ++++T AA +++ + LRI ++ C + Y L ++ D++ + Sbjct: 1 MVELTPAAIQELERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQ 60 Query: 61 GAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 G I I + L +D++++L+ +F+ NPNA+ CGCG +F + Sbjct: 61 GWTIAIAAEAAELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRV 109 >2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114 Score = 107 bits (269), Expect = 5e-25 Identities = 47/110 (42%), Positives = 67/110 (60%), Gaps = 1/110 (0%) Query: 1 MVPIIKITDAAATQIKTILESNSDKKAL-RITIEGGGCSGFSYKFDLESKQSEDDIVFEK 59 M + TDAAA ++K+++ + R+ I GGGCSGF Y F + K ++ D+ EK Sbjct: 5 MAVPLTFTDAAANKVKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEK 64 Query: 60 NGAQIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATSNCGCGTSFSI 109 +G Q+ ID +SL YL +D+ + L F + NPNATS CGCG+SFSI Sbjct: 65 SGVQLVIDPMSLQYLIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSFSI 114 >2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125 Score = 87.4 bits (216), Expect = 7e-19 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 4 IIKITDAAATQIKTILES-NSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62 + K+T AAA Q+ + ++ LR+ Y+ + +D G Sbjct: 22 MFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSIDYRMGFDDLTEDDI-RLTSEGV 80 Query: 63 QIFIDKISLAYLTNSEIDFVDNLLSKS-FQIRNPNATS 99 +I I ++ L + +D+V+ + F NP + Sbjct: 81 EIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDPT 118 >2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius UCC118} SCOP: b.124.1.1 Length = 128 Score = 31.7 bits (72), Expect = 0.037 Identities = 17/112 (15%), Positives = 37/112 (33%), Gaps = 23/112 (20%) Query: 5 IKITDAAATQIKTILESNSDKKALRITI--------EGGGCSGFSYKFDL------ESKQ 50 I +TD AA +++ + L + + G CS + F + + Sbjct: 5 ITVTDDAAKKLQRYTD--DSNAVLLLDFDDGVGALSKVGVCS-LNSDFRILVVSKDMDYK 61 Query: 51 SEDDIVFEKNGAQIFIDKISLAYLTNS-EIDFVD-----NLLSKSFQIRNPN 96 + + V + N + + S Y+ ++ +I L + P Sbjct: 62 KDYNEVIDSNIGKFYYKGYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPA 113 >2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural genomics; 2.04A {Lactobacillus acidophilus ncfm} Length = 141 Score = 30.9 bits (70), Expect = 0.078 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 5 IKITDAAATQIKTILESNS------DKKALRITIEGGGCSGFSYKFDL---ESKQSEDDI 55 IK TD A +K + D + +I+GG C F + + + + Sbjct: 6 IKFTDNAVDYLKRREILDKILILITDDGGGKYSIQGGSC-SMGAHFSIIWLDKVDPDYPV 64 Query: 56 VFEKN-GAQIFIDKISLAYLTNS-EIDFVDNLLS 87 +I+ L + +D+ LS Sbjct: 65 KIANEQNVKIYTSDFDKTMLGPNMVMDYNAGSLS 98 >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424 Score = 27.7 bits (60), Expect = 0.72 Identities = 12/38 (31%), Positives = 16/38 (42%) Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKN 60 S K RI I G G +G + LE D + E+ Sbjct: 2 SISKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERT 39 >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 Score = 27.1 bits (59), Expect = 1.0 Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 1/39 (2%) Query: 23 SDKKALRITIEGGGCSGFSYKFDLESKQSEDDI-VFEKN 60 + ++ +I + G G +GF L S + ++EK Sbjct: 2 TQEQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQ 40 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 26.1 bits (56), Expect = 1.7 Identities = 7/19 (36%), Positives = 11/19 (57%), Gaps = 3/19 (15%) Query: 5 IKI--TDAA-ATQIKTILE 20 +K+ D+A A IK +E Sbjct: 29 LKLYADDSAPALAIKATME 47 >1tf4_A T. fusca endo/EXO-cellulase E4 catalytic domain and cellulose-binding domain; glycosyl hydrolase, cellulose degradation; 1.90A {Thermobifida fusca} SCOP: a.102.1.2 b.2.2.2 PDB: 1js4_A 3tf4_A* 4tf4_A* Length = 605 Score = 24.5 bits (53), Expect = 5.2 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 8/76 (10%) Query: 12 ATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIFIDKISL 71 T+IK ++ + S A + F Y F L+ DI Q + Sbjct: 476 FTEIKAMIRNQSGWPA----RMLDKGT-FRYWFTLDEGVDPADITVSSAYNQCATPEDVH 530 Query: 72 AYLTNS---EIDFVDN 84 + EID Sbjct: 531 HVSGDLYYVEIDCTGE 546 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.133 0.368 Gapped Lambda K H 0.267 0.0561 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 884,321 Number of extensions: 35014 Number of successful extensions: 131 Number of sequences better than 10.0: 1 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 19 Length of query: 109 Length of database: 5,693,230 Length adjustment: 73 Effective length of query: 36 Effective length of database: 3,923,418 Effective search space: 141243048 Effective search space used: 141243048 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 50 (23.4 bits)