RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780287|ref|YP_003064700.1| iron-sulfur cluster assembly
accessory protein [Candidatus Liberibacter asiaticus str. psy62]
         (109 letters)



>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF)
          {Escherichia coli [TaxId: 562]}
          Length = 97

 Score = 96.2 bits (239), Expect = 6e-22
 Identities = 30/95 (31%), Positives = 54/95 (56%)

Query: 5  IKITDAAATQIKTILESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQI 64
          I ++D+AA ++ T L +      LR+ +   GCSG +Y  +   + + +DIVFE  G ++
Sbjct: 2  ITLSDSAAARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKV 61

Query: 65 FIDKISLAYLTNSEIDFVDNLLSKSFQIRNPNATS 99
           +D  S+ +L  +++DFV   L++ F+  NPN   
Sbjct: 62 VVDGKSMQFLDGTQLDFVKEGLNEGFKFTNPNVKD 96


>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 101

 Score = 86.3 bits (213), Expect = 6e-19
 Identities = 37/93 (39%), Positives = 54/93 (58%), Gaps = 1/93 (1%)

Query: 4   IIKITDAAATQIKTIL-ESNSDKKALRITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGA 62
           I K+TD A  +IK +  E+N +   LRI +  GGCSGF Y    +    E D VFE +G 
Sbjct: 9   IFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGV 68

Query: 63  QIFIDKISLAYLTNSEIDFVDNLLSKSFQIRNP 95
           ++ ID  S+ Y+  +E+D+V + +   F IRNP
Sbjct: 69  KVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNP 101


>d1xgsa2 d.127.1.1 (A:1-194,A:272-295) Methionine aminopeptidase
           {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 218

 Score = 25.0 bits (53), Expect = 2.0
 Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 3/36 (8%)

Query: 30  ITIEGGGCSGFSYKFDLESKQSEDDIVFEKNGAQIF 65
             IE     G     +    Q E  I+ EK+   + 
Sbjct: 184 FAIEPFATIG---ARNGIVAQFEHTIIVEKDSVIVT 216


>d1b6aa2 d.127.1.1 (A:110-374,A:449-478) Methionine aminopeptidase
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 295

 Score = 24.1 bits (51), Expect = 3.3
 Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)

Query: 30  ITIEGGGCSGFSY--KFDLESKQSEDDIVFEKNGAQIF 65
             IE  G +G          + Q E  I+      ++ 
Sbjct: 252 YAIETFGSTGKGVVDIKGSYTAQFEHTILLRPTCKEVV 289


>d1nvus_ a.117.1.1 (S:) Son of sevenless protein homolog 1 (sos-1)
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 481

 Score = 24.0 bits (51), Expect = 3.9
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 2/21 (9%)

Query: 41 SYKFDLESKQSEDDIVFEKNG 61
           Y+F      SE++I+FE+N 
Sbjct: 9  VYRFAEPD--SEENIIFEENM 27


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.368 

Gapped
Lambda     K      H
   0.267   0.0608    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 387,087
Number of extensions: 15472
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 15
Length of query: 109
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 41
Effective length of database: 1,473,956
Effective search space: 60432196
Effective search space used: 60432196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)