HHsearch alignment for GI: 254780288 and conserved domain: COG3021
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown].
Probab=99.75 E-value=1.1e-18 Score=124.28 Aligned_cols=220 Identities=17% Similarity=0.132 Sum_probs=114.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC
Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632
Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281)
T Consensus 88 ~~~~l~~N~r~~n~~~~k~Lsl~~~~~~D~v~~~E~~~~~~~~~~~l~~~yP~~~~~~~~~~~~~~a~~sr~~~~~~~~~ 167 (309)
T COG3021 88 LLWNLQKNVRFDNASVAKLLSLIQQLDADAVTTPEGVQLWTAKVGALAAQYPAFILCQHPTGVFTLAILSRRPCCPLTEA 167 (309)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCEEEEEECCCCCCCCCCCC
T ss_conf 45565542025676789999887664753222188887767678899874974240689987221100034655552235
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420
Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
T Consensus 168 e~~~-~~pk~~~~t~~~~~~g~~l~v~~lh~~~-~~~~~~--~~~-~ql~~l~~~i~---~~~gpvIlaGDfNa~p---- 235 (309)
T COG3021 168 EPWL-RLPKSALATAYPLPDGTELTVVALHAVN-FPVGTD--PQR-AQLLELGDQIA---GHSGPVILAGDFNAPP---- 235 (309)
T ss_pred CCCC-CCCCCCEEEEEECCCCCEEEEEEECCCC-CCCCCC--HHH-HHHHHHHHHHH---CCCCCEEEEECCCCCC----
T ss_conf 7640-1776512689986899889998622545-667751--889-99999999997---1788758861378850----
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEE
Q ss_conf 00012104873446345565321033100000013378887200357876752557771356999477898333202871
Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARID 242 (281)
Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~ 242 (281)
T Consensus 236 -WS~---------------~~~R~~~l~~~~~~~~aG--~~~~~~~p~~~~---r~~g~PIDhvf~rg-l--~~~ka~rl 291 (309)
T COG3021 236 -WSR---------------TAKRMAALGGLRAAPRAG--LWEVRFTPDERR---RAFGLPIDHVFYRG-L--TVMKARRL 291 (309)
T ss_pred -HHH---------------HHHHHHHHCCCCCCHHCC--CCCCCCCHHHHH---HCCCCCCCEEEECC-C--CHHHHHHC
T ss_conf -557---------------789999861643222205--776642777874---12589852123358-6--04433205
Q ss_pred CHHHCCCCCCCCCCEEEEEEC
Q ss_conf 222068676762219999955
Q gi|254780288|r 243 TKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 243 ~~~~~~~~~SDH~Pv~~~l~l 263 (281)
T Consensus 292 ~-----~~gSDH~PLLveF~~ 307 (309)
T COG3021 292 P-----DRGSDHRPLLVEFSY 307 (309)
T ss_pred C-----CCCCCCCCEEEEEEE
T ss_conf 4-----557777716899885