HHsearch alignment for GI: 254780288 and conserved domain: COG5239
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification].
Probab=99.57 E-value=1.6e-14 Score=101.01 Aligned_cols=247 Identities=23% Similarity=0.260 Sum_probs=116.6
Q ss_pred CEEEEEEEC-------------C----HHHHHHHHHHHHHHHCCCEEEEEEEECCHH-HCCHHHHHHCCCEEEEEECCC-
Q ss_conf 079987103-------------1----888899899999872898899985657944-589778732897899930477-
Q gi|254780288|r 4 VTVATWNVN-------------S----IRARIHNLAAWIKENNPDIICLQETKTEDK-NFPFETLQSLNYHIETCGQKS- 64 (281)
Q Consensus 4 lrI~TwNin-------------g----lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~-~~~~~~~~~~gy~~~~~~~k~- 64 (281)
T Consensus 31 ftimTYN~Laq~y~~r~~y~~s~~aL~W~~R~~~L~~EL~~Yn~Di~CLQEvd~~~~~~fw~~~l~~~gY~~if~~k~~k 110 (378)
T COG5239 31 FTIMTYNVLAQTYATRKMYPYSGWALKWSYRSRLLLQELLYYNADILCLQEVDAEDFEDFWKDQLGKLGYDGIFIPKERK 110 (378)
T ss_pred EEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHCCCCCCEEEECCCCC
T ss_conf 69986135346653331247755552237888999998740378656621133667888888873355643288258984
Q ss_pred -----------CCCEEEEEEECCEEEE-------ECCCCCCCCCCC-----------------C----EECCCCCCC-CC
Q ss_conf -----------6514898740313786-------325556443233-----------------0----101100023-20
Q gi|254780288|r 65 -----------YNGVAILSKYQPIEIV-------THLPGDDLDVQA-----------------R----FIEATFTIN-TQ 104 (281)
Q Consensus 65 -----------~~GvaIlsk~~~~~v~-------~~~~~~~~d~~~-----------------R----~i~~~i~~~-~~ 104 (281)
T Consensus 111 ~~~m~~~d~t~~dGc~if~k~~~~~sk~~li~~~~~~f~~p~~~~er~r~t~~~lnri~e~~~~~w~~l~~~l~n~e~gd 190 (378)
T COG5239 111 VKWMIDYDTTKVDGCAIFLKRFIDSSKLGLILAVTHLFWHPYGYYERFRQTYILLNRIGEKDNIAWVCLFVGLFNKEPGD 190 (378)
T ss_pred CCCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCEEEHHHHHHHHHHHHHHHHHHCCHHHEEEEECCCCCCC
T ss_conf 44244333432303899987526610112432416764062001013467799999986543103132033321579998
Q ss_pred EEEEEEEECCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHCC--------------CC-HHHHHHHCCCCCCCCCCHHHH-
Q ss_conf 79996310466785443101-23677776553322232014--------------76-000011014686742000012-
Q gi|254780288|r 105 TLRIGNLYLPHGNPITSTKY-DDKISWIKRFLRFASQRLEL--------------EE-PLIFAGDYNIIPQPHDCYNPI- 167 (281)
Q Consensus 105 ~i~v~n~y~P~g~~~~~~~~-~~k~~~~~~l~~~l~~~~~~--------------~~-~vIi~GDFN~a~~~~D~~~~~- 167 (281)
T Consensus 191 ~~~va~Th~~w----~-~~~~dvk~iq~s~l~~~~k~~~~e~~~~d~~~~d~k~~~~~~~l~~gd~ns~~~s~v-y~~l~ 264 (378)
T COG5239 191 TPYVANTHLPW----D-PKYRDVKLIQCSLLYRELKKVLKEELNDDKEEGDIKSYPEVDILITGDFNSLRASLV-YKFLV 264 (378)
T ss_pred CEEEEECCCCC----C-CCCCCHHEEHHHHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCCCCCCCCCEECCEE-HHHHH
T ss_conf 30677011245----6-777712100246799999998642077410014545676554235787100003300-14544
Q ss_pred ----HCCCCCCCCHHHHHHHHHCCC-CCHHHHCCC--CCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf ----104873446345565321033-100000013--378-887200357876752557771356999477898333202
Q gi|254780288|r 168 ----IWENDACFTLEVRQSFQKLQN-MGFTDAIRA--THD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281)
Q Consensus 168 ----~~~~~~~~~~~er~~~~~l~~-~gl~D~~r~--~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281)
T Consensus 265 ~~~~q~H~~-~---~~~-~~~lysvg~~~~h~~n~~~~~~~~~~~fTN~t---~~~---kG-~iDYIfy~~~~~~~~~~~ 332 (378)
T COG5239 265 TSQIQLHES-L---NGR-DFSLYSVGYKFVHPENLKSDNSKGELGFTNWT---PGF---KG-VIDYIFYHGGLLTRQTGL 332 (378)
T ss_pred HHHHHHHHC-C---CCC-CHHHHCCCCCCCCHHHCCCCCCCCCCCCCCCC---CCC---CC-EEEEEEEECCCCEEEECC
T ss_conf 079886410-3---544-32220155455584231557876876501356---654---54-257999846861044045
Q ss_pred --EEEC----HHH---CCCCCCCCCCEEEEEECCCCCC
Q ss_conf --8712----220---6867676221999995588776
Q gi|254780288|r 240 --RIDT----KPR---GWTKPSDHTPVIVSLDIPEPRK 268 (281)
Q Consensus 240 --~I~~----~~~---~~~~~SDH~Pv~~~l~lp~~~~ 268 (281)
T Consensus 333 l~~ve~e~~~k~~G~pn~~~pSdhipl~~ef~~~~~~~ 370 (378)
T COG5239 333 LGVVEGEYASKVIGLPNMPFPSDHIPLLAEFASDHKNL 370 (378)
T ss_pred CCCCCCCHHHHHCCCCCCCCCCCCCCCHHCCCCCCCCC
T ss_conf 55545102331105678999512440010134432013