HHsearch alignment for GI: 254780288 and conserved domain: TIGR00633
>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=100.00 E-value=0 Score=596.01 Aligned_cols=259 Identities=35% Similarity=0.655 Sum_probs=247.8
Q ss_pred CEEEEEEECCHHHHHHHH--HHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECC----CCCCEEEEEEECCE
Q ss_conf 079987103188889989--999987289889998565794458977873289789993047----76514898740313
Q gi|254780288|r 4 VTVATWNVNSIRARIHNL--AAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQK----SYNGVAILSKYQPI 77 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l--~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k----~~~GvaIlsk~~~~ 77 (281)
T Consensus 1 mKiiSWNVNGlRA~~~~~sfL~~l~~~~pDvLCLQETK~~~~~~p~~~~~~~GY~~~~~~~~~kk~Gy~GVA~~Sk~~P~ 80 (279)
T TIGR00633 1 MKIISWNVNGLRARLKKLSFLDWLKEENPDVLCLQETKVADEQFPKELLEELGYHVFFHGAKKKKKGYSGVAILSKVEPL 80 (279)
T ss_pred CCEEEEECCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf 91688711234421351128889865389787622002787766346664079815884146658851368998601632
Q ss_pred EEEECCCC-CCCCCCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCC--CCHHHHHH
Q ss_conf 78632555-64432330-10110002320799963104667854431-0123677776553322232014--76000011
Q gi|254780288|r 78 EIVTHLPG-DDLDVQAR-FIEATFTINTQTLRIGNLYLPHGNPITST-KYDDKISWIKRFLRFASQRLEL--EEPLIFAG 152 (281)
Q Consensus 78 ~v~~~~~~-~~~d~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~-~~~~k~~~~~~l~~~l~~~~~~--~~~vIi~G 152 (281)
T Consensus 81 ~V~~G~g~~~~~D~egR~~i~~~i~a~f~~f~v~n~YvPNg~~~~~~~rl~Yk~~~w~~~~~~~~~~l~~~~~~pv~~cG 160 (279)
T TIGR00633 81 SVRYGFGVLEEHDEEGRVIIMRVITAEFDGFYVVNVYVPNGGARGLETRLEYKLDFWEALLQYYLKELDASDGKPVIICG 160 (279)
T ss_pred EEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf 02206878872103774653331010105479998776686113654462788899999999999998617999799984
Q ss_pred HCCCCCCCCCCHHHHHC------CCCCCCCHHHHHHHHHCCCCC-HHHHCCCCCCCCC-CEECCCCCC-CCCCCCCCCEE
Q ss_conf 01468674200001210------487344634556532103310-0000013378887-200357876-75255777135
Q gi|254780288|r 153 DYNIIPQPHDCYNPIIW------ENDACFTLEVRQSFQKLQNMG-FTDAIRATHDTHH-LYSFWDYYA-DSWSKNKGIRI 223 (281)
Q Consensus 153 DFN~a~~~~D~~~~~~~------~~~~~~~~~er~~~~~l~~~g-l~D~~r~~~~~~~-~yT~~~~~~-~~~~~n~G~RI 223 (281)
T Consensus 161 D~NvAh~eiDl~~P~~NRKr~l~~~~~gF~~~ER~~~~~ll~~ggf~DtFR~~~p~~~~~YTwW~YR~K~ar~~N~GWRi 240 (279)
T TIGR00633 161 DLNVAHTEIDLANPKENRKRWLRKGNAGFTPEEREAFDELLEAGGFVDTFRHFNPDTEGAYTWWDYRSKRARDRNRGWRI 240 (279)
T ss_pred CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf 77889771124577502479988188987889999999998617964870365888797312540023677246734145
Q ss_pred EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf 699947789833320287122206867676221999995
Q gi|254780288|r 224 DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262 (281)
Q Consensus 224 D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281)
T Consensus 241 Dy~l~s~~l~~~v~d~~I~~~~rg~ekPSDHcPi~l~~~ 279 (279)
T TIGR00633 241 DYFLVSEPLAARVVDSYIDSEVRGMEKPSDHCPIVLELD 279 (279)
T ss_pred EEEECCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEC
T ss_conf 326538689986510001303452788887355477759