HHsearch alignment for GI: 254780288 and conserved domain: TIGR00633

>TIGR00633 xth exodeoxyribonuclease III (xth); InterPro: IPR004808 All proteins in this family for which functions are known are 5' AP endonucleases that function in base excision repair and the repair of abasic sites in DNA.; GO: 0004518 nuclease activity, 0006281 DNA repair.
Probab=100.00  E-value=0  Score=596.01  Aligned_cols=259  Identities=35%  Similarity=0.655  Sum_probs=247.8

Q ss_pred             CEEEEEEECCHHHHHHHH--HHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECC----CCCCEEEEEEECCE
Q ss_conf             079987103188889989--999987289889998565794458977873289789993047----76514898740313
Q gi|254780288|r    4 VTVATWNVNSIRARIHNL--AAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQK----SYNGVAILSKYQPI   77 (281)
Q Consensus         4 lrI~TwNinglr~r~~~l--~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k----~~~GvaIlsk~~~~   77 (281)
T Consensus         1 mKiiSWNVNGlRA~~~~~sfL~~l~~~~pDvLCLQETK~~~~~~p~~~~~~~GY~~~~~~~~~kk~Gy~GVA~~Sk~~P~   80 (279)
T TIGR00633         1 MKIISWNVNGLRARLKKLSFLDWLKEENPDVLCLQETKVADEQFPKELLEELGYHVFFHGAKKKKKGYSGVAILSKVEPL   80 (279)
T ss_pred             CCEEEEECCHHHHHCCHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHCCCCCEEEEECCCCCCCEEEEEEEECCCCC
T ss_conf             91688711234421351128889865389787622002787766346664079815884146658851368998601632


Q ss_pred             EEEECCCC-CCCCCCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHCC--CCHHHHHH
Q ss_conf             78632555-64432330-10110002320799963104667854431-0123677776553322232014--76000011
Q gi|254780288|r   78 EIVTHLPG-DDLDVQAR-FIEATFTINTQTLRIGNLYLPHGNPITST-KYDDKISWIKRFLRFASQRLEL--EEPLIFAG  152 (281)
Q Consensus        78 ~v~~~~~~-~~~d~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~-~~~~k~~~~~~l~~~l~~~~~~--~~~vIi~G  152 (281)
T Consensus        81 ~V~~G~g~~~~~D~egR~~i~~~i~a~f~~f~v~n~YvPNg~~~~~~~rl~Yk~~~w~~~~~~~~~~l~~~~~~pv~~cG  160 (279)
T TIGR00633        81 SVRYGFGVLEEHDEEGRVIIMRVITAEFDGFYVVNVYVPNGGARGLETRLEYKLDFWEALLQYYLKELDASDGKPVIICG  160 (279)
T ss_pred             EEEECCCCCCCCCCCCCEEEEEEEEEECCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEC
T ss_conf             02206878872103774653331010105479998776686113654462788899999999999998617999799984


Q ss_pred             HCCCCCCCCCCHHHHHC------CCCCCCCHHHHHHHHHCCCCC-HHHHCCCCCCCCC-CEECCCCCC-CCCCCCCCCEE
Q ss_conf             01468674200001210------487344634556532103310-0000013378887-200357876-75255777135
Q gi|254780288|r  153 DYNIIPQPHDCYNPIIW------ENDACFTLEVRQSFQKLQNMG-FTDAIRATHDTHH-LYSFWDYYA-DSWSKNKGIRI  223 (281)
Q Consensus       153 DFN~a~~~~D~~~~~~~------~~~~~~~~~er~~~~~l~~~g-l~D~~r~~~~~~~-~yT~~~~~~-~~~~~n~G~RI  223 (281)
T Consensus       161 D~NvAh~eiDl~~P~~NRKr~l~~~~~gF~~~ER~~~~~ll~~ggf~DtFR~~~p~~~~~YTwW~YR~K~ar~~N~GWRi  240 (279)
T TIGR00633       161 DLNVAHTEIDLANPKENRKRWLRKGNAGFTPEEREAFDELLEAGGFVDTFRHFNPDTEGAYTWWDYRSKRARDRNRGWRI  240 (279)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEE
T ss_conf             77889771124577502479988188987889999999998617964870365888797312540023677246734145


Q ss_pred             EEEEECHHHHHHHHCEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf             699947789833320287122206867676221999995
Q gi|254780288|r  224 DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLD  262 (281)
Q Consensus       224 D~il~s~~l~~~v~~~~I~~~~~~~~~~SDH~Pv~~~l~  262 (281)
T Consensus       241 Dy~l~s~~l~~~v~d~~I~~~~rg~ekPSDHcPi~l~~~  279 (279)
T TIGR00633       241 DYFLVSEPLAARVVDSYIDSEVRGMEKPSDHCPIVLELD  279 (279)
T ss_pred             EEEECCHHHHHHHHHHHCCCHHHCCCCCCCCCCEEEEEC
T ss_conf             326538689986510001303452788887355477759