HHsearch results for GI: 254780288 and protein with PDBid: 1ako_A
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli K12} SCOP: d.151.1.1
Probab=100.00 E-value=0 Score=352.90 Aligned_cols=259 Identities=31% Similarity=0.518 Sum_probs=214.1
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEECC
Q ss_conf 07998710318888998999998728988999856579445897787328978999304776514898740313786325
Q gi|254780288|r 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHL 83 (281)
Q Consensus 4 lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~~ 83 (281)
|||+||||||||+|++.+.++|++++||||||||||+.+++++.+.+..+||.+.+.....+.|+++.++..+.....+.
T Consensus 1 Mki~s~NvnGir~r~~~i~~~i~~~~~DIi~LQE~k~~~~~~~~~~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (268)
T 1ako_A 1 MKFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGHYGVALLTKETPIAVRRGF 80 (268)
T ss_dssp CEEEEEECSCGGGCHHHHHHHHHHHCCSEEEEECCCCCGGGCCHHHHHHTTCEEEEEEETTEEEEEEEESSCCSEEEESS
T ss_pred CEEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHCCHHHHHHCCCEEEECCCCCCCCCEEEECCCCHHHCCCC
T ss_conf 98999972318875988999998789989999833289001898889755964642475466662265123523310487
Q ss_pred CCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCC-CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 556443233010110002320799963104667854-4310123677776553322232014760000110146867420
Q gi|254780288|r 84 PGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI-TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 84 ~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~-~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
......................+.++++|.+.+... ...+.++|..|.+.+..++.....++.|+|+|||||+++.+.|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~il~GdfN~~~~~~D 160 (268)
T 1ako_A 81 PGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLD 160 (268)
T ss_dssp TTCCHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGG
T ss_pred CCCCCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHH
T ss_conf 63332222310110001235877888764168864220021378999999999999998737997686345234841765
Q ss_pred CHHHHHC------CCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCC-CCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHH
Q ss_conf 0001210------48734463455653210331000000133788-8720035787675255777135699947789833
Q gi|254780288|r 163 CYNPIIW------ENDACFTLEVRQSFQKLQNMGFTDAIRATHDT-HHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSL 235 (281)
Q Consensus 163 ~~~~~~~------~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~-~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~ 235 (281)
++....+ ....++..++|+++..+.+.||+|+||.++|. .+.+|||+++.+++.+|.|+||||||+|+.+.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~~~~~~~~~~~~~~~~~~~~~~g~RIDyil~S~~l~~~ 240 (268)
T 1ako_A 161 IGIGEENRKRWLRTGKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAEC 240 (268)
T ss_dssp BCSCHHHHHHHHHHTBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTT
T ss_pred HCCHHHCCHHHCCCCCCCCCHHHHHHHHHHHHCCCEEEHHHHCCCCCCCCEECCCCCCCCCCCCCEEEEEEEECHHHHHH
T ss_conf 33735401121025765668789999999974897877143268878752004676776447986785799978799734
Q ss_pred HHCEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf 320287122206867676221999995
Q gi|254780288|r 236 LHSARIDTKPRGWTKPSDHTPVIVSLD 262 (281)
Q Consensus 236 v~~~~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281)
++++.|++..+++..+|||+||+++|.
T Consensus 241 ~~~~~i~~~~~~~~~~SDH~PV~~~~r 267 (268)
T 1ako_A 241 CVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp EEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred HEEEEEEHHHCCCCCCCCCCCEEEEEE
T ss_conf 128887566418999998544799997