HHsearch results for GI: 254780288 and protein with PDBid: 1vyb_A
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=100.00 E-value=1.5e-44 Score=268.41 Aligned_cols=231 Identities=25% Similarity=0.350 Sum_probs=164.9
Q ss_pred CCCEEEEEEECCHHH--HHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEE
Q ss_conf 700799871031888--899899999872898899985657944589778732897899930477651489874031378
Q gi|254780288|r 2 SVVTVATWNVNSIRA--RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEI 79 (281)
Q Consensus 2 ~~lrI~TwNinglr~--r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v 79 (281)
+.|||+||||||++. +..++.++|++++|||||||||+.....+........+|++......+++|+|+++|+++...
T Consensus 6 ~~lki~t~Ni~g~~~~~~~~~i~~~i~~~~pDIi~LQEt~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 85 (238)
T 1vyb_A 6 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANGKQKKAGVAILVSDKTDFK 85 (238)
T ss_dssp CCEEEEEEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTSGGGCCCTTCCEEEEECCSSSSCCEEEEECTTCCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEEEEEECCCCCCCEEEEEEECCCEE
T ss_conf 88899999888841234467999999866992999983646624453111103430664410367455589975023100
Q ss_pred EECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCC
Q ss_conf 63255564432330101100023207999631046678544310123677776553322232014760000110146867
Q gi|254780288|r 80 VTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQ 159 (281)
Q Consensus 80 ~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~ 159 (281)
...... +..++...+.+......+.++|+|+|++.. . ++...+...+.+ ....++|++||||..+.
T Consensus 86 ~~~~~~---~~~~~~~~~~~~~~~~~~~i~~vy~~~~~~---~------~~~~~~~~~~~~--~~~~~~il~GDfN~~~~ 151 (238)
T 1vyb_A 86 PTKIKR---DKEGHYIMVKGSIQQEELTILNIYAPNTGA---P------RFIKQVLSDLQR--DLDSHTLIMGDFNTPLS 151 (238)
T ss_dssp EEEEEE---CTTSSEEEEEEEETTEEEEEEEEECCSSSH---H------HHHHHHHHHTTT--TCCTTEEEEEECSSCSS
T ss_pred CCCCCC---CCCCCEEEEEEEECCCEEEEEEECCCCCHH---H------HHHHHHHHHHHH--HCCCCCEECCCCCCCCC
T ss_conf 156445---755540236885057449999623763024---7------788888999986--30365011010046874
Q ss_pred CCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf 42000012104873446345565321033100000013378887200357876752557771356999477898333202
Q gi|254780288|r 160 PHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281)
Q Consensus 160 ~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281)
+.|..... +...+.+.....+.+.||.|+||.+++....+|||+++.+. +.||||||+|+.+..++.++
T Consensus 152 ~~~~~~~~------~~~~~~~~~~~~l~~~~l~d~~r~~~~~~~~~t~~~~~~~~-----~~rID~i~~s~~~~~~~~~~ 220 (238)
T 1vyb_A 152 TLDRSTRQ------KVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHT-----YSKIDHIVGSKALLSKCKRT 220 (238)
T ss_dssp GGGBTTCC------CCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETTTTE-----EECCEEEEEEGGGGGGEEEE
T ss_pred HHHCCCCC------CCCHHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCCCCCCC-----CCEEEEEEECCHHHHHCCEE
T ss_conf 55423500------02135688899886303553121201368755510478897-----86267999784797026299
Q ss_pred EEECHHHCCCCCCCCCCEEEEEE
Q ss_conf 87122206867676221999995
Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLD 262 (281)
Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~ 262 (281)
+|+.+ .+|||+||+++|.
T Consensus 221 ~v~~~-----~~SDH~pv~~~Lk 238 (238)
T 1vyb_A 221 EIITN-----YLSDHSAIKLELR 238 (238)
T ss_dssp EEECC-----SSSSSCEEEEEEC
T ss_pred EECCC-----CCCCCCCEEEEEC
T ss_conf 96899-----7998201899969