HHsearch results for GI: 254780288 and protein with PDBid: 1wdu_A

>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=100.00  E-value=1.9e-34  Score=211.64  Aligned_cols=223  Identities=13%  Similarity=0.138  Sum_probs=138.5

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE
Q ss_conf             00799871031888899899999872898899985657944589778732897899930--4776514898740313786
Q gi|254780288|r    3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV   80 (281)
Q Consensus         3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~   80 (281)
                      .+||+||||++.+.+.+.+..+|++++||||||||+......   ......+++.+...  ..+..|+||+++.++..+.
T Consensus        19 ~~rvl~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ai~~~~~~~~~~   95 (245)
T 1wdu_A           19 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAK---SMKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI   95 (245)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf             879992204997567999999998629988999869867665---10104553147744567998489999946765521


Q ss_pred             ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf             32555644323301011000232079996310466785443101236777765533222320147600001101468674
Q gi|254780288|r   81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP  160 (281)
Q Consensus        81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~  160 (281)
                      .. +.   ....+++.+.+...+..++++|+|+|.+...     +.   +++++...+.  ...+.++|+|||||+.+.+
T Consensus        96 ~~-~~---~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~-----~~---~~~~l~~~~~--~~~~~~~Il~GDfN~~~~~  161 (245)
T 1wdu_A           96 QY-PQ---LTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-----ES---YLEQIKRVER--KMGPKRLIFGGDANAKSTW  161 (245)
T ss_dssp             EC-TT---TCCSSEEEEEEECSSCEEEEEEEECCTTSCS-----HH---HHHHHHHHHH--TTCSSSEEEEEECCCCCGG
T ss_pred             EE-CC---CCCCCEEEEEEEECCEEEEEEEEECCCCCCH-----HH---HHHHHHHHHH--HCCCCEEEEEEECCCCCCC
T ss_conf             30-37---7989968999992893299999966999627-----89---9999999887--5479649997343536544


Q ss_pred             CCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf             20000121048734463455653210-33100000013378887200357876752557771356999477898333202
Q gi|254780288|r  161 HDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA  239 (281)
Q Consensus       161 ~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~  239 (281)
                      .+.   .       ........+..+ .+.++...     .....+||+..+.+.+.   ..||||||+|+++...+.++
T Consensus       162 ~~~---~-------~~~~~~~~l~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~~---~~rID~i~~s~~l~~~~~~~  223 (245)
T 1wdu_A          162 WGS---K-------EDDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRY---QSRVDVTFCTEDMLDLIDGW  223 (245)
T ss_dssp             GTC---S-------SCCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CC---EECCEEEEECGGGBTTEEEE
T ss_pred             CCC---C-------CCCCCHHHHHHHHHHHCCCCC-----CCCCCEEEECCCCCCCC---CCCEEEEEECCHHHHHCEEE
T ss_conf             466---5-------310001233334443222224-----65321012024688888---96248999893686214699


Q ss_pred             EEECHHHCCCCCCCCCCEEEEEECC
Q ss_conf             8712220686767622199999558
Q gi|254780288|r  240 RIDTKPRGWTKPSDHTPVIVSLDIP  264 (281)
Q Consensus       240 ~I~~~~~~~~~~SDH~Pv~~~l~lp  264 (281)
                      .|..+..    .|||+||+++|++-
T Consensus       224 ~v~~~~~----~SDH~pv~~~l~l~  244 (245)
T 1wdu_A          224 RVDEDLV----SSDHNGMVFNIRLQ  244 (245)
T ss_dssp             EECTTSS----SSSBCCEEEEECCC
T ss_pred             EECCCCC----CCCCCEEEEEEEEE
T ss_conf             9989999----99981089999970