HHsearch results for GI: 254780288 and protein with PDBid: 1wdu_A
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=100.00 E-value=1.9e-34 Score=211.64 Aligned_cols=223 Identities=13% Similarity=0.138 Sum_probs=138.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE
Q ss_conf 00799871031888899899999872898899985657944589778732897899930--4776514898740313786
Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV 80 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~ 80 (281)
.+||+||||++.+.+.+.+..+|++++||||||||+...... ......+++.+... ..+..|+||+++.++..+.
T Consensus 19 ~~rvl~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~ai~~~~~~~~~~ 95 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAK---SMKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI 95 (245)
T ss_dssp CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECCCCCCCC---CCHHCCCCEEEEEECCCCCCCEEEEEEECCCCCCE
T ss_conf 879992204997567999999998629988999869867665---10104553147744567998489999946765521
Q ss_pred ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf 32555644323301011000232079996310466785443101236777765533222320147600001101468674
Q gi|254780288|r 81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP 160 (281)
Q Consensus 81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~ 160 (281)
.. +. ....+++.+.+...+..++++|+|+|.+... +. +++++...+. ...+.++|+|||||+.+.+
T Consensus 96 ~~-~~---~~~~~~~~~~i~~~~~~i~v~~~y~~~~~~~-----~~---~~~~l~~~~~--~~~~~~~Il~GDfN~~~~~ 161 (245)
T 1wdu_A 96 QY-PQ---LTTNNIVVVGIRTRAWEITLVSYYFEPDKPI-----ES---YLEQIKRVER--KMGPKRLIFGGDANAKSTW 161 (245)
T ss_dssp EC-TT---TCCSSEEEEEEECSSCEEEEEEEECCTTSCS-----HH---HHHHHHHHHH--TTCSSSEEEEEECCCCCGG
T ss_pred EE-CC---CCCCCEEEEEEEECCEEEEEEEEECCCCCCH-----HH---HHHHHHHHHH--HCCCCEEEEEEECCCCCCC
T ss_conf 30-37---7989968999992893299999966999627-----89---9999999887--5479649997343536544
Q ss_pred CCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf 20000121048734463455653210-33100000013378887200357876752557771356999477898333202
Q gi|254780288|r 161 HDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239 (281)
Q Consensus 161 ~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~ 239 (281)
.+. . ........+..+ .+.++... .....+||+..+.+.+. ..||||||+|+++...+.++
T Consensus 162 ~~~---~-------~~~~~~~~l~~~~~~~~~~~~-----~~~~~~t~~~~~~~~~~---~~rID~i~~s~~l~~~~~~~ 223 (245)
T 1wdu_A 162 WGS---K-------EDDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRY---QSRVDVTFCTEDMLDLIDGW 223 (245)
T ss_dssp GTC---S-------SCCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CC---EECCEEEEECGGGBTTEEEE
T ss_pred CCC---C-------CCCCCHHHHHHHHHHHCCCCC-----CCCCCEEEECCCCCCCC---CCCEEEEEECCHHHHHCEEE
T ss_conf 466---5-------310001233334443222224-----65321012024688888---96248999893686214699
Q ss_pred EEECHHHCCCCCCCCCCEEEEEECC
Q ss_conf 8712220686767622199999558
Q gi|254780288|r 240 RIDTKPRGWTKPSDHTPVIVSLDIP 264 (281)
Q Consensus 240 ~I~~~~~~~~~~SDH~Pv~~~l~lp 264 (281)
.|..+.. .|||+||+++|++-
T Consensus 224 ~v~~~~~----~SDH~pv~~~l~l~ 244 (245)
T 1wdu_A 224 RVDEDLV----SSDHNGMVFNIRLQ 244 (245)
T ss_dssp EECTTSS----SSSBCCEEEEECCC
T ss_pred EECCCCC----CCCCCEEEEEEEEE
T ss_conf 9989999----99981089999970