HHsearch results for GI: 254780288 and protein with PDBid: 2ei9_A
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.97 E-value=1.3e-31 Score=195.86 Aligned_cols=229 Identities=10% Similarity=0.141 Sum_probs=134.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEECCCCCCEEEEEEECCEEEEEC
Q ss_conf 00799871031888899899999872898899985657944589778732897899930477651489874031378632
Q gi|254780288|r 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTH 82 (281)
Q Consensus 3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~~k~~~GvaIlsk~~~~~v~~~ 82 (281)
.|||++|||||++++.+.+.++++++++|||||||++.. .||.... .+..|+||+++.++......
T Consensus 7 ~LrI~~~N~~~~~~~~~~l~~~~~~~~~DIv~lQE~~~~-----------~~~~~~~---~~~~g~ai~v~~~~~~~~~~ 72 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYSM-----------VGFLAQC---GAHPKAGVYIRNRVLPCAVL 72 (240)
T ss_dssp EEEEEEEECTTCHHHHHTHHHHHHHHTCSEEEEESCCTT-----------SSSEECC---SSSCSEEEEESSTTSCEEEC
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEEECCCCC-----------CCCCCEE---CCCCCEEEEEECCCCCCCCC
T ss_conf 368999807984889999999999759999999655607-----------8850224---58996899995687553210
Q ss_pred CCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCC
Q ss_conf 55564432330101100023207999631046678544310123677776553322232014760000110146867420
Q gi|254780288|r 83 LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHD 162 (281)
Q Consensus 83 ~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D 162 (281)
-. ..+ ...+.+...+..+.|+|+|+|.+.+.. .++..+...+.. ..+.++|+|||||+.+...+
T Consensus 73 ~~--~~~----~~~~~~~~~~~~~~i~svY~pp~~~~~--------~~~~~l~~~~~~--~~~~~~ii~GDfN~~~~~w~ 136 (240)
T 2ei9_A 73 HH--LSS----THITVVHIGGWDLYMVSAYFQYSDPID--------PYLHRLGNILDR--LRGARVVICADTNAHSPLWH 136 (240)
T ss_dssp GG--GCC----SSEEEEEETTTTEEEEEEECCTTSCSH--------HHHHHHHHHHHH--TTTSCEEEEEECCCCCGGGT
T ss_pred CC--CCC----CCEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHHHHHHH--CCCCCEEEECHHCCCCCCCC
T ss_conf 14--786----657999979928999999849798558--------999999999986--69996698301104560004
Q ss_pred CHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCEEEE
Q ss_conf 00012104873446345565321033100000013378887200357876752557771356999477898333202871
Q gi|254780288|r 163 CYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARID 242 (281)
Q Consensus 163 ~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~~I~ 242 (281)
.. ............ .....|.+.....-++..++....|||++.++ +.||||+|+|+.+ ++.++.|.
T Consensus 137 ~~-~~~~~~~~~~~~---~~~~~l~~~~~~~~l~~~~~~~~~~Tf~~~~~-------~~~ID~~~~s~~~--~~~~~~v~ 203 (240)
T 2ei9_A 137 SL-PRHYVGRGQEVA---DRRAKMEDFIGARRLVVHNADGHLPTFSTANG-------ESYVDVTLSTRGV--RVSEWRVT 203 (240)
T ss_dssp CC-HHHHSSSCHHHH---HHHHHHHHHHHHTTCEECCCTTCCCSEEETTE-------EECCEEEEECTTC--CEEEEEEC
T ss_pred CC-CCCCCCCCCCCC---HHHHHHHHHHHHCCEEEECCCCCCEECCCCCC-------CCEECEEEECCCE--EEEEEEEC
T ss_conf 65-434445555442---33556887653155177315788201668998-------8784649807970--16658966
Q ss_pred CHHHCCCCCCCCCCEEEEEECCCCCCC-CCCCCCCCCC
Q ss_conf 222068676762219999955887766-6653671111
Q gi|254780288|r 243 TKPRGWTKPSDHTPVIVSLDIPEPRKK-QQDSTSQNMK 279 (281)
Q Consensus 243 ~~~~~~~~~SDH~Pv~~~l~lp~~~~~-~~~~~~~~~~ 279 (281)
.. ..|||.||.+++.+..+.+. .+..++-..+
T Consensus 204 ~~-----~~SDH~~I~~~l~~~~~~~~~~~~~~r~~~~ 236 (240)
T 2ei9_A 204 NE-----SSSDHRLIVFGVGGGTTGERDEDEEARSDLR 236 (240)
T ss_dssp SC-----CSSSBCCEEEEEEC-----------------
T ss_pred CC-----CCCCCHHEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 89-----9999545699997787889999888758899