HHsearch results for GI: 254780288 and protein with PDBid: 2o3h_A
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=100.00 E-value=0 Score=283.69 Aligned_cols=252 Identities=29% Similarity=0.496 Sum_probs=170.3
Q ss_pred CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEE----ECCCCCCEEEEEEECC
Q ss_conf 700799871031888899-89999987289889998565794458977873289789993----0477651489874031
Q gi|254780288|r 2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC----GQKSYNGVAILSKYQP 76 (281)
Q Consensus 2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~----~~k~~~GvaIlsk~~~ 76 (281)
+.|||+||||||+|++.+ .+.+||++++||||||||||+.+.++..+.....+|.+... +.++..|.+++.+..+
T Consensus 27 ~~mkiiSwNvnGlr~~~~~~~~~~l~~~~pDIi~LQE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (285)
T 2o3h_A 27 ATLKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP 106 (285)
T ss_dssp CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCTTSCCGGGGGCGGGCEEEEECBC--CCSCCEEEEESSCC
T ss_pred CCEEEEEEECCCHHHHHHCCHHHHHHHCCCCEEEEEEEECCHHHCCHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCC
T ss_conf 96799999817877732335899997579979999975478111888686157874455411355665443123246686
Q ss_pred EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 37863255564432330101100023207999631046678544310123677776553322232014760000110146
Q gi|254780288|r 77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI 156 (281)
Q Consensus 77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~ 156 (281)
..+...........++++.... .....+..++++.++.. ...+......... ..........+.+++++||||+
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~gd~n~ 180 (285)
T 2o3h_A 107 LKVSYGIGDEEHDQEGRVIVAE--FDSFVLVTAYVPNAGRG---LVRLEYRQRWDEA-FRKFLKGLASRKPLVLCGDLNV 180 (285)
T ss_dssp SEEEESCSCGGGSSBCCEEEEE--CSSCEEEEEECCCCCGG---GTTHHHHHHHHHH-HHHHHHHHHTTSCEEEEEECSC
T ss_pred EEEEECCCCCCCCCCCEEEEEE--ECCEEEEEEEECCCCCC---CCCHHHHHHHHHH-HHHHHHHHCCCCEEEEECCHHC
T ss_conf 0566357877444332189998--35449999970467775---2006788877566-6554443046543897051112
Q ss_pred CCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf 867420000121048734463455653210-33100000013378-8872003578767525577713569994778983
Q gi|254780288|r 157 IPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS 234 (281)
Q Consensus 157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~ 234 (281)
++.+.+.++.............+...|..+ .+.||.|++|..+| .++.||||+++.+++.++.|+||||||+|+++..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~r~~~p~~~~~yT~~s~~~~~~~~~~g~RID~Il~S~~l~~ 260 (285)
T 2o3h_A 181 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP 260 (285)
T ss_dssp CCSGGGBSCTTTCTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTHHHHTCCBCCEEEEECGGGGG
T ss_pred CCCHHHCCCHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCCCEEEECCCCCCCCCCCCEEEEEEEECHHHHH
T ss_conf 86243204767642002468388888999974147544202424899982675458788452799667689997838971
Q ss_pred HHHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf 33202871222068676762219999955
Q gi|254780288|r 235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 (281)
Q Consensus 235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l 263 (281)
++.++.|+.. ..+|||+||+++|+|
T Consensus 261 ~v~~~~v~~~----~~~SDH~PV~v~L~l 285 (285)
T 2o3h_A 261 ALCDSKIRSK----ALGSDHCPITLYLAL 285 (285)
T ss_dssp GEEEEEECTT----CCSSSBCCEEEEECC
T ss_pred HCEEEEECCC----CCCCCCCCEEEEEEC
T ss_conf 3107898789----999983268999979