HHsearch results for GI: 254780288 and protein with PDBid: 3i41_A

>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=100.00  E-value=1.2e-33  Score=207.19  Aligned_cols=236  Identities=18%  Similarity=0.264  Sum_probs=129.8

Q ss_pred             CCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH-HCCHHHH-HHCCCEEEEEE---------
Q ss_conf             00799871031----------888899899999872898899985657944-5897787-32897899930---------
Q gi|254780288|r    3 VVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK-NFPFETL-QSLNYHIETCG---------   61 (281)
Q Consensus         3 ~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~-~~~~~~~-~~~gy~~~~~~---------   61 (281)
                      .|||+||||.+          -..|.+.+.++|...+|||||||||..... ......+ ..++|.....+         
T Consensus        29 ~lrv~syNi~~~~~~~~~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  108 (317)
T 3i41_A           29 DLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKT  108 (317)
T ss_dssp             CCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEE
T ss_pred             CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf             68999852888766667870688999999999976699989998676735499999988865894677604665433332


Q ss_pred             -------CCCCCCEEEEEEECCEEEEECCCCCC--CC-CCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHHHH
Q ss_conf             -------47765148987403137863255564--43-2330-101100023207999631046678544310--12367
Q gi|254780288|r   62 -------QKSYNGVAILSKYQPIEIVTHLPGDD--LD-VQAR-FIEATFTINTQTLRIGNLYLPHGNPITSTK--YDDKI  128 (281)
Q Consensus        62 -------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d-~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~k~  128 (281)
                             ....+|++|+||+|+.++........  .+ ...| ++.+.+...+..|.|+|+|++++.......  ...|.
T Consensus       109 ~~~~~~~~~~~~g~~ilSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~~~~~~~~~~R~  188 (317)
T 3i41_A          109 EGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRA  188 (317)
T ss_dssp             EESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHH
T ss_pred             CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf             24445554247737999858830058897367888410147446999996299799999743555677520567899999


Q ss_pred             HHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCCC---C
Q ss_conf             7776553322232-0147600001101468674200001210487344634556532103-310000001337888---7
Q gi|254780288|r  129 SWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDTH---H  203 (281)
Q Consensus       129 ~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~~---~  203 (281)
                      .+++.+...+... ...+.++|+|||||+.+....                    ++.+. ..++.|+++..++..   .
T Consensus       189 ~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~--------------------~~~~~~~~~~~d~~~~~~~~~~~~~  248 (317)
T 3i41_A          189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPE--------------------FKDMLKNLNVNDVLYAGHNSTWDPQ  248 (317)
T ss_dssp             HHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHH--------------------HHHHHHHHTBCCCEEEECSCSBCTT
T ss_pred             HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf             99999998665540146675798444788988779--------------------9999986698653001477654576


Q ss_pred             CEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-EEEEC-HH-----------HCCCCCCCCCCEEEEE
Q ss_conf             20035787675255777135699947789833320-28712-22-----------0686767622199999
Q gi|254780288|r  204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-ARIDT-KP-----------RGWTKPSDHTPVIVSL  261 (281)
Q Consensus       204 ~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-~~I~~-~~-----------~~~~~~SDH~Pv~~~l  261 (281)
                      .++|+.+   .+..+...||||||+|++....... ..+.. ..           .....+|||+||+|-+
T Consensus       249 ~~~~~~~---~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~  316 (317)
T 3i41_A          249 SNSIAKY---NYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYS  316 (317)
T ss_dssp             TCHHHHH---HCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEE
T ss_pred             CCCCCCC---CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf             5765565---6578987148899975740264311004886236631012444567789967610648993