HHsearch results for GI: 254780288 and protein with PDBid: 3i41_A
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus RN4220} PDB: 3i46_A 3i48_A
Probab=100.00 E-value=1.2e-33 Score=207.19 Aligned_cols=236 Identities=18% Similarity=0.264 Sum_probs=129.8
Q ss_pred CCEEEEEEECC----------HHHHHHHHHHHHHHHCCCEEEEEEEECCHH-HCCHHHH-HHCCCEEEEEE---------
Q ss_conf 00799871031----------888899899999872898899985657944-5897787-32897899930---------
Q gi|254780288|r 3 VVTVATWNVNS----------IRARIHNLAAWIKENNPDIICLQETKTEDK-NFPFETL-QSLNYHIETCG--------- 61 (281)
Q Consensus 3 ~lrI~TwNing----------lr~r~~~l~~~l~~~~pDIi~LQEvk~~~~-~~~~~~~-~~~gy~~~~~~--------- 61 (281)
.|||+||||.+ -..|.+.+.++|...+|||||||||..... ......+ ..++|.....+
T Consensus 29 ~lrv~syNi~~~~~~~~~~~~~~~R~~~i~~~i~~~~~DII~LQEV~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 108 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPNWGQYKRADLIGQSSYIKNNDVVIFNEAFDNGASDKLLSNVKKEYPYQTPVLGRSQSGWDKT 108 (317)
T ss_dssp CCCEEEEEEEECCTTTSTTSCHHHHHHHHHHCSTTSSCSEEEEEEECSHHHHHHHHHHTTTTCCEECCCTTSCSTTCSEE
T ss_pred CEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 68999852888766667870688999999999976699989998676735499999988865894677604665433332
Q ss_pred -------CCCCCCEEEEEEECCEEEEECCCCCC--CC-CCCC-EECCCCCCCCCEEEEEEEECCCCCCCCCCC--HHHHH
Q ss_conf -------47765148987403137863255564--43-2330-101100023207999631046678544310--12367
Q gi|254780288|r 62 -------QKSYNGVAILSKYQPIEIVTHLPGDD--LD-VQAR-FIEATFTINTQTLRIGNLYLPHGNPITSTK--YDDKI 128 (281)
Q Consensus 62 -------~k~~~GvaIlsk~~~~~v~~~~~~~~--~d-~~~R-~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~--~~~k~ 128 (281)
....+|++|+||+|+.++........ .+ ...| ++.+.+...+..|.|+|+|++++....... ...|.
T Consensus 109 ~~~~~~~~~~~~g~~ilSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~ntHl~~~~~~~~~~~~~~~R~ 188 (317)
T 3i41_A 109 EGSYSSTVAEDGGVAIVSKYPIKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRA 188 (317)
T ss_dssp EESCCSSCSBCCCCEEEESSCEEEEEEEECSCCCSSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHH
T ss_pred CCCCCCCCCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCEEEEEEECCCEEEEEEEECCCCCCCCCHHHHHHHHHH
T ss_conf 24445554247737999858830058897367888410147446999996299799999743555677520567899999
Q ss_pred HHHHHHHHHHHHH-HCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCC-CCCHHHHCCCCCCCC---C
Q ss_conf 7776553322232-0147600001101468674200001210487344634556532103-310000001337888---7
Q gi|254780288|r 129 SWIKRFLRFASQR-LELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQ-NMGFTDAIRATHDTH---H 203 (281)
Q Consensus 129 ~~~~~l~~~l~~~-~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~-~~gl~D~~r~~~~~~---~ 203 (281)
.+++.+...+... ...+.++|+|||||+.+.... ++.+. ..++.|+++..++.. .
T Consensus 189 ~q~~~i~~~~~~~~~~~~~~vil~GDfN~~~~~~~--------------------~~~~~~~~~~~d~~~~~~~~~~~~~ 248 (317)
T 3i41_A 189 EQMKEISDFVKKKNIPKDETVYIGGDLNVNKGTPE--------------------FKDMLKNLNVNDVLYAGHNSTWDPQ 248 (317)
T ss_dssp HHHHHHHHHHHHHTCCTTSCEEEEEECCCCTTSHH--------------------HHHHHHHHTBCCCEEEECSCSBCTT
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCHH--------------------HHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 99999998665540146675798444788988779--------------------9999986698653001477654576
Q ss_pred CEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHC-EEEEC-HH-----------HCCCCCCCCCCEEEEE
Q ss_conf 20035787675255777135699947789833320-28712-22-----------0686767622199999
Q gi|254780288|r 204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS-ARIDT-KP-----------RGWTKPSDHTPVIVSL 261 (281)
Q Consensus 204 ~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~-~~I~~-~~-----------~~~~~~SDH~Pv~~~l 261 (281)
.++|+.+ .+..+...||||||+|++....... ..+.. .. .....+|||+||+|-+
T Consensus 249 ~~~~~~~---~~~~~~~~riDyI~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~A~~ 316 (317)
T 3i41_A 249 SNSIAKY---NYPNGKPEHLDYIFTDKDHKQPKQLVNEVVTEKPKPWDVYAAAYYYVYNDFSDHYPIKAYS 316 (317)
T ss_dssp TCHHHHH---HCTTCCCBCCEEEEEBTTSCCCSSEEEEECCCCCSCEEEEETTEEEEECCSSSBCCEEEEE
T ss_pred CCCCCCC---CCCCCCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEE
T ss_conf 5765565---6578987148899975740264311004886236631012444567789967610648993